RNA–Protein interactions for RNA: ENST00000538995.1

RTN3-209, Transcript of reticulon 3, humanhuman

TSL 2

Gene RTN3, Length 814 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-209ENST00000538995 DEC1Q9P2X7 70 aa12.13□□□□□ -0.47
RTN3-209ENST00000538995 EBF1Q9UH73 591 aa12.13□□□□□ -0.47
RTN3-209ENST00000538995 MMP17Q9ULZ9 603 aa12.13□□□□□ -0.47
RTN3-209ENST00000538995 M0QYV0 167 aa12.12□□□□□ -0.47
RTN3-209ENST00000538995 TULP2O00295 520 aa12.12□□□□□ -0.47
RTN3-209ENST00000538995 MDM4O15151 490 aa12.12□□□□□ -0.47
RTN3-209ENST00000538995 HRO43593 1189 aa12.12□□□□□ -0.47
RTN3-209ENST00000538995 LRP3O75074 770 aa12.12□□□□□ -0.47
RTN3-209ENST00000538995 TULP3O75386 442 aa12.12□□□□□ -0.47
RTN3-209ENST00000538995 RETP07949 1114 aa12.12□□□□□ -0.47
RTN3-209ENST00000538995 CHRM1P11229 460 aaPredicted RBP12.12□□□□□ -0.47
RTN3-209ENST00000538995 ERCC5P28715 1186 aaPredicted RBP12.12□□□□□ -0.47
RTN3-209ENST00000538995 ADIGQ0VDE8 80 aa12.12□□□□□ -0.47
RTN3-209ENST00000538995 EFEMP1Q12805 493 aa12.12□□□□□ -0.47
RTN3-209ENST00000538995 ANO4Q32M45 955 aa12.12□□□□□ -0.47
RTN3-209ENST00000538995 CT47A1Q5JQC4 288 aaPredicted RBP12.12□□□□□ -0.47
RTN3-209ENST00000538995 TRIM65Q6PJ69 517 aa12.12□□□□□ -0.47
RTN3-209ENST00000538995 GBP6Q6ZN66 633 aa12.12□□□□□ -0.47
RTN3-209ENST00000538995 PRR23BQ6ZRT6 265 aa12.12□□□□□ -0.47
RTN3-209ENST00000538995 RRAGAQ7L523 313 aa12.12□□□□□ -0.47
RTN3-209ENST00000538995 BHLHA9Q7RTU4 235 aa12.12□□□□□ -0.47
RTN3-209ENST00000538995 TMEM25Q86YD3 366 aa12.12□□□□□ -0.47
RTN3-209ENST00000538995 MIB1Q86YT6 1006 aa12.12□□□□□ -0.47
RTN3-209ENST00000538995 IRF2BP1Q8IU81 584 aa12.12□□□□□ -0.47
RTN3-209ENST00000538995 FAM114A1Q8IWE2 563 aa12.12□□□□□ -0.47
RTN3-209ENST00000538995 TERB1Q8NA31 727 aa12.12□□□□□ -0.47
RTN3-209ENST00000538995 SLC35F5Q8WV83 523 aa12.12□□□□□ -0.47
RTN3-209ENST00000538995 GAB3Q8WWW8 586 aa12.12□□□□□ -0.47
RTN3-209ENST00000538995 IRGQQ8WZA9 623 aa12.12□□□□□ -0.47
RTN3-209ENST00000538995 PLD4Q96BZ4 506 aa12.12□□□□□ -0.47
RTN3-209ENST00000538995 HSFY1Q96LI6 401 aa12.12□□□□□ -0.47
RTN3-209ENST00000538995 KREMEN1Q96MU8 473 aa12.12□□□□□ -0.47
RTN3-209ENST00000538995 GBP4Q96PP9 640 aa12.12□□□□□ -0.47
RTN3-209ENST00000538995 XPO6Q96QU8 1125 aaKnown RBP12.12□□□□□ -0.47
RTN3-209ENST00000538995 HHIPQ96QV1 700 aa12.12□□□□□ -0.47
RTN3-209ENST00000538995 MARCH2Q9P0N8 246 aa12.12□□□□□ -0.47
RTN3-209ENST00000538995 RASAL2Q9UJF2 1139 aa12.12□□□□□ -0.47
RTN3-209ENST00000538995 NUDT5Q9UKK9 219 aa12.12□□□□□ -0.47
RTN3-209ENST00000538995 MYH10P35580 1976 aa12.12□□□□□ -0.47
RTN3-209ENST00000538995 RNF225M0QZC1 329 aaPredicted RBP12.11□□□□□ -0.47
RTN3-209ENST00000538995 AXIN1O15169 862 aa12.11□□□□□ -0.47
RTN3-209ENST00000538995 RPP40O75818 363 aaKnown RBP12.11□□□□□ -0.47
RTN3-209ENST00000538995 FBXO21O94952 628 aa12.11□□□□□ -0.47
RTN3-209ENST00000538995 BRD2P25440 801 aaKnown RBP12.11□□□□□ -0.47
RTN3-209ENST00000538995 CHKAP35790 457 aa12.11□□□□□ -0.47
RTN3-209ENST00000538995 KIR2DL1P43626 348 aaPredicted RBP12.11□□□□□ -0.47
RTN3-209ENST00000538995 SLC6A11P48066 632 aa12.11□□□□□ -0.47
RTN3-209ENST00000538995 DGKEP52429 567 aa12.11□□□□□ -0.47
RTN3-209ENST00000538995 MFAP3P55082 362 aa12.11□□□□□ -0.47
RTN3-209ENST00000538995 SEC13P55735 322 aa12.11□□□□□ -0.47
RTN3-209ENST00000538995 DAOAP59103 153 aa12.11□□□□□ -0.47
RTN3-209ENST00000538995 KDSRQ06136 332 aa12.11□□□□□ -0.47
RTN3-209ENST00000538995 MESP2Q0VG99 397 aa12.11□□□□□ -0.47
RTN3-209ENST00000538995 TPD52L1Q16890 204 aaPredicted RBP12.11□□□□□ -0.47
RTN3-209ENST00000538995 EXOC3L4Q17RC7 722 aa12.11□□□□□ -0.47
RTN3-209ENST00000538995 DPCR1Q3MIW9 517 aa12.11□□□□□ -0.47
RTN3-209ENST00000538995 C2orf27AQ580R0 203 aa12.11□□□□□ -0.47
RTN3-209ENST00000538995 GRAMD4Q6IC98 578 aa12.11□□□□□ -0.47
RTN3-209ENST00000538995 CEP68Q76N32 757 aa12.11□□□□□ -0.47
RTN3-209ENST00000538995 TRMT11Q7Z4G4 463 aaKnown RBP12.11□□□□□ -0.47
RTN3-209ENST00000538995 ARHGAP30Q7Z6I6 1101 aaPredicted RBP12.11□□□□□ -0.47
RTN3-209ENST00000538995 TSTD1Q8NFU3 115 aa12.11□□□□□ -0.47
RTN3-209ENST00000538995 UBA3Q8TBC4 463 aa12.11□□□□□ -0.47
RTN3-209ENST00000538995 LOXL4Q96JB6 756 aa12.11□□□□□ -0.47
RTN3-209ENST00000538995 ZSWIM1Q9BR11 485 aa12.11□□□□□ -0.47
RTN3-209ENST00000538995 BBS2Q9BXC9 721 aa12.11□□□□□ -0.47
RTN3-209ENST00000538995 ABCC13Q9NSE7 274 aa12.11□□□□□ -0.47
RTN3-209ENST00000538995 LMBRD1Q9NUN5 540 aa12.11□□□□□ -0.47
RTN3-209ENST00000538995 APEX2Q9UBZ4 518 aa12.11□□□□□ -0.47
RTN3-209ENST00000538995 HBS1LQ9Y450 684 aaKnown RBP12.11□□□□□ -0.47
RTN3-209ENST00000538995 CEP250Q9BV73 2442 aa12.11□□□□□ -0.47
RTN3-209ENST00000538995 TBC1D3BA6NDS4 549 aa12.1□□□□□ -0.47
RTN3-209ENST00000538995 NEDD8-MDP1E9PL57 170 aa12.1□□□□□ -0.47
RTN3-209ENST00000538995 SART1O43290 800 aaKnown RBP12.1□□□□□ -0.47
RTN3-209ENST00000538995 MED7O43513 233 aa12.1□□□□□ -0.47
RTN3-209ENST00000538995 FOXD2O60548 495 aaPredicted RBP12.1□□□□□ -0.47
RTN3-209ENST00000538995 LATS1O95835 1130 aa12.1□□□□□ -0.47
RTN3-209ENST00000538995 PENKP01210 267 aaPredicted RBP12.1□□□□□ -0.47
RTN3-209ENST00000538995 KRT5P13647 590 aa12.1□□□□□ -0.47
RTN3-209ENST00000538995 TYRP14679 529 aa12.1□□□□□ -0.47
RTN3-209ENST00000538995 CORO1AP31146 461 aaKnown RBP12.1□□□□□ -0.47
RTN3-209ENST00000538995 MTIF2P46199 727 aaKnown RBP12.1□□□□□ -0.47
RTN3-209ENST00000538995 RPL34P49207 117 aaKnown RBP12.1□□□□□ -0.47
RTN3-209ENST00000538995 ZNF445P59923 1031 aa12.1□□□□□ -0.47
RTN3-209ENST00000538995 SRSF5Q13243 272 aaKnown RBP12.1□□□□□ -0.47
RTN3-209ENST00000538995 TRIP4Q15650 581 aaPredicted RBP12.1□□□□□ -0.47
RTN3-209ENST00000538995 CRY1Q16526 586 aa12.1□□□□□ -0.47
RTN3-209ENST00000538995 MAN2A1Q16706 1144 aa12.1□□□□□ -0.47
RTN3-209ENST00000538995 EOGTQ5NDL2 527 aa12.1□□□□□ -0.47
RTN3-209ENST00000538995 BSPRYQ5W0U4 402 aa12.1□□□□□ -0.47
RTN3-209ENST00000538995 PMF1Q6P1K2 205 aa12.1□□□□□ -0.47
RTN3-209ENST00000538995 MSANTD2Q6P1R3 559 aa12.1□□□□□ -0.47
RTN3-209ENST00000538995 CACNA2D4Q7Z3S7 1137 aa12.1□□□□□ -0.47
RTN3-209ENST00000538995 C11orf74Q86VG3 221 aa12.1□□□□□ -0.47
RTN3-209ENST00000538995 RASSF3Q86WH2 238 aa12.1□□□□□ -0.47
RTN3-209ENST00000538995 FAM217AQ8IXS0 508 aa12.1□□□□□ -0.47
RTN3-209ENST00000538995 KIAA2013Q8IYS2 634 aa12.1□□□□□ -0.47
RTN3-209ENST00000538995 CPXM2Q8N436 756 aa12.1□□□□□ -0.47
RTN3-209ENST00000538995 DCLK2Q8N568 766 aa12.1□□□□□ -0.47
RTN3-209ENST00000538995 IL17RCQ8NAC3 791 aa12.1□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 19.2 ms