RNA–Protein interactions for RNA: ENST00000534389.2

CSDE1-216, Transcript of cold shock domain containing E1, humanhuman

TSL 4

Gene CSDE1, Length 601 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSDE1-216ENST00000534389 NEK9Q8TD19 979 aa3.39□□□□□ -1.87
CSDE1-216ENST00000534389 SNRNP27Q8WVK2 155 aaKnown RBP3.39□□□□□ -1.87
CSDE1-216ENST00000534389 JPH3Q8WXH2 748 aaPredicted RBP3.39□□□□□ -1.87
CSDE1-216ENST00000534389 LPIN2Q92539 896 aa3.39□□□□□ -1.87
CSDE1-216ENST00000534389 MAGOHBQ96A72 148 aaKnown RBP3.39□□□□□ -1.87
CSDE1-216ENST00000534389 CLIP3Q96DZ5 547 aa3.39□□□□□ -1.87
CSDE1-216ENST00000534389 HSPBAP1Q96EW2 488 aa3.39□□□□□ -1.87
CSDE1-216ENST00000534389 CHMP6Q96FZ7 201 aa3.39□□□□□ -1.87
CSDE1-216ENST00000534389 LTV1Q96GA3 475 aaPredicted RBP3.39□□□□□ -1.87
CSDE1-216ENST00000534389 DHTKD1Q96HY7 919 aaPredicted RBP3.39□□□□□ -1.87
CSDE1-216ENST00000534389 AJUBAQ96IF1 538 aa3.39□□□□□ -1.87
CSDE1-216ENST00000534389 FAM81BQ96LP2 452 aa3.39□□□□□ -1.87
CSDE1-216ENST00000534389 TEKT5Q96M29 485 aa3.39□□□□□ -1.87
CSDE1-216ENST00000534389 INPP4AQ96PE3 977 aaPredicted RBP3.39□□□□□ -1.87
CSDE1-216ENST00000534389 LMF1Q96S06 567 aa3.39□□□□□ -1.87
CSDE1-216ENST00000534389 HAPLN3Q96S86 360 aa3.39□□□□□ -1.87
CSDE1-216ENST00000534389 RUFY1Q96T51 708 aa3.39□□□□□ -1.87
CSDE1-216ENST00000534389 PSMB7Q99436 277 aa3.39□□□□□ -1.87
CSDE1-216ENST00000534389 C7orf25Q9BPX7 421 aa3.39□□□□□ -1.87
CSDE1-216ENST00000534389 KRTAP4-11Q9BYQ6 195 aa3.39□□□□□ -1.87
CSDE1-216ENST00000534389 TXLNGYQ9BZA5 131 aa3.39□□□□□ -1.87
CSDE1-216ENST00000534389 OSBPL6Q9BZF3 934 aa3.39□□□□□ -1.87
CSDE1-216ENST00000534389 SLC13A1Q9BZW2 595 aa3.39□□□□□ -1.87
CSDE1-216ENST00000534389 RAB17Q9H0T7 212 aa3.39□□□□□ -1.87
CSDE1-216ENST00000534389 CARD9Q9H257 536 aa3.39□□□□□ -1.87
CSDE1-216ENST00000534389 VPS16Q9H269 839 aa3.39□□□□□ -1.87
CSDE1-216ENST00000534389 BOLA2Q9H3K6 86 aa3.39□□□□□ -1.87
CSDE1-216ENST00000534389 THAP9Q9H5L6 903 aa3.39□□□□□ -1.87
CSDE1-216ENST00000534389 GREM2Q9H772 168 aa3.39□□□□□ -1.87
CSDE1-216ENST00000534389 DDX21Q9NR30 783 aaKnown RBP eCLIP3.39□□□□□ -1.87
CSDE1-216ENST00000534389 EVLQ9UI08 416 aaPredicted RBP3.39□□□□□ -1.87
CSDE1-216ENST00000534389 FBXO2Q9UK22 296 aaPredicted RBP3.39□□□□□ -1.87
CSDE1-216ENST00000534389 ADAM29Q9UKF5 820 aa3.39□□□□□ -1.87
CSDE1-216ENST00000534389 BARX2Q9UMQ3 279 aaPredicted RBP3.39□□□□□ -1.87
CSDE1-216ENST00000534389 CHMP2BQ9UQN3 213 aa3.39□□□□□ -1.87
CSDE1-216ENST00000534389 ANKRD6Q9Y2G4 727 aa3.39□□□□□ -1.87
CSDE1-216ENST00000534389 PTPN22Q9Y2R2 807 aa3.39□□□□□ -1.87
CSDE1-216ENST00000534389 HYOU1Q9Y4L1 999 aa3.39□□□□□ -1.87
CSDE1-216ENST00000534389 TET3O43151 1660 aa3.39□□□□□ -1.87
CSDE1-216ENST00000534389 RPTORQ8N122 1335 aa3.39□□□□□ -1.87
CSDE1-216ENST00000534389 STK36Q9NRP7 1315 aa3.39□□□□□ -1.87
CSDE1-216ENST00000534389 DLC1Q96QB1 1528 aa3.39□□□□□ -1.87
CSDE1-216ENST00000534389 TMEM94Q12767 1356 aa3.38□□□□□ -1.87
CSDE1-216ENST00000534389 POGZQ7Z3K3 1410 aa3.38□□□□□ -1.87
CSDE1-216ENST00000534389 MACROD2A1Z1Q3 448 aa3.38□□□□□ -1.87
CSDE1-216ENST00000534389 MAGEA13PA6NCF6 341 aa3.38□□□□□ -1.87
CSDE1-216ENST00000534389 NPEPPSL1A6NEC2 478 aa3.38□□□□□ -1.87
CSDE1-216ENST00000534389 TMEM247A6NEH6 219 aa3.38□□□□□ -1.87
CSDE1-216ENST00000534389 TRIM75PA6NK02 468 aa3.38□□□□□ -1.87
CSDE1-216ENST00000534389 FAM171A2A8MVW0 826 aa3.38□□□□□ -1.87
CSDE1-216ENST00000534389 UBE2Q2LH0YL09 131 aa3.38□□□□□ -1.87
CSDE1-216ENST00000534389 GCOM1H8Y6P7 765 aaPredicted RBP3.38□□□□□ -1.87
CSDE1-216ENST00000534389 RAD51CO43502 376 aa3.38□□□□□ -1.87
CSDE1-216ENST00000534389 MARCH6O60337 910 aa3.38□□□□□ -1.87
CSDE1-216ENST00000534389 ECE2O60344 883 aa3.38□□□□□ -1.87
CSDE1-216ENST00000534389 SNX3O60493 162 aa3.38□□□□□ -1.87
CSDE1-216ENST00000534389 ATP9AO75110 1047 aa3.38□□□□□ -1.87
CSDE1-216ENST00000534389 PPP6R2O75170 966 aa3.38□□□□□ -1.87
CSDE1-216ENST00000534389 TACC1O75410 805 aa3.38□□□□□ -1.87
CSDE1-216ENST00000534389 TOX4O94842 621 aa3.38□□□□□ -1.87
CSDE1-216ENST00000534389 TMCC1O94876 653 aa3.38□□□□□ -1.87
CSDE1-216ENST00000534389 HEXIM1O94992 359 aaKnown RBP3.38□□□□□ -1.87
CSDE1-216ENST00000534389 TJP3O95049 919 aa3.38□□□□□ -1.87
CSDE1-216ENST00000534389 PLEKP08567 350 aaPredicted RBP3.38□□□□□ -1.87
CSDE1-216ENST00000534389 MYZAPP0CAP1 466 aa3.38□□□□□ -1.87
CSDE1-216ENST00000534389 CCDC166P0CW27 439 aa3.38□□□□□ -1.87
CSDE1-216ENST00000534389 COL6A1P12109 1028 aa3.38□□□□□ -1.87
CSDE1-216ENST00000534389 IDEP14735 1019 aa3.38□□□□□ -1.87
CSDE1-216ENST00000534389 ETS2P15036 469 aa3.38□□□□□ -1.87
CSDE1-216ENST00000534389 CHN1P15882 459 aa3.38□□□□□ -1.87
CSDE1-216ENST00000534389 ATF3P18847 181 aa3.38□□□□□ -1.87
CSDE1-216ENST00000534389 CSF2RBP32927 897 aa3.38□□□□□ -1.87
CSDE1-216ENST00000534389 CNR2P34972 360 aa3.38□□□□□ -1.87
CSDE1-216ENST00000534389 PTPN7P35236 360 aa3.38□□□□□ -1.87
CSDE1-216ENST00000534389 KLK7P49862 253 aa3.38□□□□□ -1.87
CSDE1-216ENST00000534389 VAV2P52735 878 aa3.38□□□□□ -1.87
CSDE1-216ENST00000534389 IFI35P80217 286 aaPredicted RBP3.38□□□□□ -1.87
CSDE1-216ENST00000534389 GPSM2P81274 684 aa3.38□□□□□ -1.87
CSDE1-216ENST00000534389 MEF2AQ02078 507 aaPredicted RBP3.38□□□□□ -1.87
CSDE1-216ENST00000534389 HHEXQ03014 270 aa3.38□□□□□ -1.87
CSDE1-216ENST00000534389 NEXNQ0ZGT2 675 aa3.38□□□□□ -1.87
CSDE1-216ENST00000534389 BIRC3Q13489 604 aa3.38□□□□□ -1.87
CSDE1-216ENST00000534389 KRT32Q14532 448 aa3.38□□□□□ -1.87
CSDE1-216ENST00000534389 SEPT2Q15019 361 aa3.38□□□□□ -1.87
CSDE1-216ENST00000534389 SAFBQ15424 915 aaKnown RBP eCLIP3.38□□□□□ -1.87
CSDE1-216ENST00000534389 IFIT1BQ5T764 474 aaKnown RBP3.38□□□□□ -1.87
CSDE1-216ENST00000534389 KLHDC7AQ5VTJ3 777 aa3.38□□□□□ -1.87
CSDE1-216ENST00000534389 CGB2Q6NT52 195 aa3.38□□□□□ -1.87
CSDE1-216ENST00000534389 SLC2A7Q6PXP3 512 aa3.38□□□□□ -1.87
CSDE1-216ENST00000534389 LARP4Q71RC2 724 aaKnown RBP eCLIP3.38□□□□□ -1.878e-15■□□□□ 10
CSDE1-216ENST00000534389 CHST3Q7LGC8 479 aa3.38□□□□□ -1.87
CSDE1-216ENST00000534389 CPLX4Q7Z7G2 160 aa3.38□□□□□ -1.87
CSDE1-216ENST00000534389 C14orf80Q86SX3 495 aa3.38□□□□□ -1.87
CSDE1-216ENST00000534389 ZNF554Q86TJ5 538 aa3.38□□□□□ -1.87
CSDE1-216ENST00000534389 HOOK3Q86VS8 718 aa3.38□□□□□ -1.87
CSDE1-216ENST00000534389 IFT20Q8IY31 132 aa3.38□□□□□ -1.87
CSDE1-216ENST00000534389 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP3.38□□□□□ -1.87
CSDE1-216ENST00000534389 UNC5BQ8IZJ1 945 aa3.38□□□□□ -1.87
CSDE1-216ENST00000534389 THEMISQ8N1K5 641 aaPredicted RBP3.38□□□□□ -1.87
CSDE1-216ENST00000534389 CBARPQ8N350 705 aaPredicted RBP3.38□□□□□ -1.87
Retrieved 100 of 20,778 RNA–protein pairs in 31.5 ms