RNA–Protein interactions for RNA: ENST00000534082.1

CD44-237, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 564 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-237ENST00000534082 CTSKP43235 329 aa6.9□□□□□ -1.3
CD44-237ENST00000534082 MCL1Q07820 350 aa6.9□□□□□ -1.3
CD44-237ENST00000534082 KRT32Q14532 448 aa6.9□□□□□ -1.3
CD44-237ENST00000534082 STARD3Q14849 445 aa6.9□□□□□ -1.3
CD44-237ENST00000534082 FUT11Q495W5 492 aa6.9□□□□□ -1.3
CD44-237ENST00000534082 EARS2Q5JPH6 523 aaKnown RBP6.9□□□□□ -1.3
CD44-237ENST00000534082 GRAMD4Q6IC98 578 aa6.9□□□□□ -1.3
CD44-237ENST00000534082 INO80CQ6PI98 192 aaPredicted RBP6.9□□□□□ -1.3
CD44-237ENST00000534082 CACUL1Q86Y37 369 aa6.9□□□□□ -1.3
CD44-237ENST00000534082 CACTIN-AS1Q8N1I8 211 aa6.9□□□□□ -1.3
CD44-237ENST00000534082 LEO1Q8WVC0 666 aaPredicted RBP6.9□□□□□ -1.3
CD44-237ENST00000534082 RFFLQ8WZ73 363 aa6.9□□□□□ -1.3
CD44-237ENST00000534082 PCMTD1Q96MG8 357 aaPredicted RBP6.9□□□□□ -1.3
CD44-237ENST00000534082 DPH1Q9BZG8 443 aa6.9□□□□□ -1.3
CD44-237ENST00000534082 MKRN2Q9H000 416 aaKnown RBP6.9□□□□□ -1.3
CD44-237ENST00000534082 TM9SF3Q9HD45 589 aa6.9□□□□□ -1.3
CD44-237ENST00000534082 ABCB6Q9NP58 842 aa6.9□□□□□ -1.3
CD44-237ENST00000534082 KMT5AQ9NQR1 393 aa6.9□□□□□ -1.3
CD44-237ENST00000534082 ITM2CQ9NQX7 267 aa6.9□□□□□ -1.3
CD44-237ENST00000534082 STARD5Q9NSY2 213 aa6.9□□□□□ -1.3
CD44-237ENST00000534082 TRPM5Q9NZQ8 1165 aa6.9□□□□□ -1.3
CD44-237ENST00000534082 MAN2B2Q9Y2E5 1009 aa6.9□□□□□ -1.3
CD44-237ENST00000534082 PCDHB6Q9Y5E3 794 aa6.9□□□□□ -1.3
CD44-237ENST00000534082 PCDHB1Q9Y5F3 818 aa6.9□□□□□ -1.3
CD44-237ENST00000534082 SPTBN1Q01082 2364 aaKnown RBP6.9□□□□□ -1.31
CD44-237ENST00000534082 ITPR3Q14573 2671 aa6.9□□□□□ -1.31
CD44-237ENST00000534082 A0A1B0GTQ1 180 aa6.89□□□□□ -1.31
CD44-237ENST00000534082 CLEC18AA5D8T8 446 aa6.89□□□□□ -1.31
CD44-237ENST00000534082 LACTBL1A8MY62 500 aa6.89□□□□□ -1.31
CD44-237ENST00000534082 GFRA2O00451 464 aa6.89□□□□□ -1.31
CD44-237ENST00000534082 PIRO00625 290 aa6.89□□□□□ -1.31
CD44-237ENST00000534082 CLDN3O15551 220 aa6.89□□□□□ -1.31
CD44-237ENST00000534082 OLFM2O95897 454 aa6.89□□□□□ -1.31
CD44-237ENST00000534082 IGLV3-19P01714 112 aa6.89□□□□□ -1.31
CD44-237ENST00000534082 MPOP05164 745 aa6.89□□□□□ -1.31
CD44-237ENST00000534082 PDIA3P30101 505 aaKnown RBP6.89□□□□□ -1.31
CD44-237ENST00000534082 MATR3P43243 847 aaKnown RBP eCLIP6.89□□□□□ -1.31
CD44-237ENST00000534082 TAF6P49848 677 aa6.89□□□□□ -1.31
CD44-237ENST00000534082 TPMTP51580 245 aa6.89□□□□□ -1.31
CD44-237ENST00000534082 RAB15P59190 212 aa6.89□□□□□ -1.31
CD44-237ENST00000534082 GABREP78334 506 aa6.89□□□□□ -1.31
CD44-237ENST00000534082 INSM1Q01101 510 aaPredicted RBP6.89□□□□□ -1.31
CD44-237ENST00000534082 TLE1Q04724 770 aa6.89□□□□□ -1.31
CD44-237ENST00000534082 PTK2Q05397 1052 aa6.89□□□□□ -1.31
CD44-237ENST00000534082 STRN3Q13033 797 aa6.89□□□□□ -1.31
CD44-237ENST00000534082 ORC1Q13415 861 aa6.89□□□□□ -1.31
CD44-237ENST00000534082 ILKQ13418 452 aa6.89□□□□□ -1.31
CD44-237ENST00000534082 PDIA5Q14554 519 aa6.89□□□□□ -1.31
CD44-237ENST00000534082 ENOX2Q16206 610 aaKnown RBP6.89□□□□□ -1.31
CD44-237ENST00000534082 CCDC142Q17RM4 750 aa6.89□□□□□ -1.31
CD44-237ENST00000534082 ANO4Q32M45 955 aa6.89□□□□□ -1.31
CD44-237ENST00000534082 TSGA10IPQ3SY00 556 aa6.89□□□□□ -1.31
CD44-237ENST00000534082 KCNT1Q5JUK3 1230 aa6.89□□□□□ -1.31
CD44-237ENST00000534082 HIST2H2BCQ6DN03 193 aa6.89□□□□□ -1.31
CD44-237ENST00000534082 JADE1Q6IE81 842 aa6.89□□□□□ -1.31
CD44-237ENST00000534082 CLEC18BQ6UXF7 455 aa6.89□□□□□ -1.31
CD44-237ENST00000534082 KDM7AQ6ZMT4 941 aa6.89□□□□□ -1.31
CD44-237ENST00000534082 ADAT2Q7Z6V5 191 aaKnown RBP6.89□□□□□ -1.31
CD44-237ENST00000534082 DDX42Q86XP3 938 aaKnown RBP eCLIP6.89□□□□□ -1.31
CD44-237ENST00000534082 SCN4BQ8IWT1 228 aa6.89□□□□□ -1.31
CD44-237ENST00000534082 DAW1Q8N136 415 aa6.89□□□□□ -1.31
CD44-237ENST00000534082 LINC00528Q8N1L1 170 aa6.89□□□□□ -1.31
CD44-237ENST00000534082 EID2Q8N6I1 236 aa6.89□□□□□ -1.31
CD44-237ENST00000534082 CLEC18CQ8NCF0 446 aa6.89□□□□□ -1.31
CD44-237ENST00000534082 EPS8L1Q8TE68 723 aa6.89□□□□□ -1.31
CD44-237ENST00000534082 SCFD1Q8WVM8 642 aa6.89□□□□□ -1.31
CD44-237ENST00000534082 PSMG3-AS1Q96PY0 264 aa6.89□□□□□ -1.31
CD44-237ENST00000534082 CCSER1Q9C0I3 900 aa6.89□□□□□ -1.31
CD44-237ENST00000534082 HAPLN2Q9GZV7 340 aa6.89□□□□□ -1.31
CD44-237ENST00000534082 RNF38Q9H0F5 515 aa6.89□□□□□ -1.31
CD44-237ENST00000534082 PCED1AQ9H1Q7 454 aa6.89□□□□□ -1.31
CD44-237ENST00000534082 BHMT2Q9H2M3 363 aa6.89□□□□□ -1.31
CD44-237ENST00000534082 OSGEPQ9NPF4 335 aa6.89□□□□□ -1.31
CD44-237ENST00000534082 DNAJC17Q9NVM6 304 aaKnown RBP6.89□□□□□ -1.31
CD44-237ENST00000534082 TBC1D14Q9P2M4 693 aa6.89□□□□□ -1.31
CD44-237ENST00000534082 ZBTB32Q9Y2Y4 487 aaPredicted RBP6.89□□□□□ -1.31
CD44-237ENST00000534082 ITPR2Q14571 2701 aa6.88□□□□□ -1.31
CD44-237ENST00000534082 MYOFQ9NZM1 2061 aa6.88□□□□□ -1.31
CD44-237ENST00000534082 BLACEA4D250 179 aa6.88□□□□□ -1.31
CD44-237ENST00000534082 ZNF840PA6NDX5 716 aa6.88□□□□□ -1.31
CD44-237ENST00000534082 WASH3PC4AMC7 463 aa6.88□□□□□ -1.31
CD44-237ENST00000534082 PRRT4C9JH25 899 aa6.88□□□□□ -1.31
CD44-237ENST00000534082 CPLX1O14810 134 aa6.88□□□□□ -1.31
CD44-237ENST00000534082 SLC16A4O15374 487 aa6.88□□□□□ -1.31
CD44-237ENST00000534082 WIPF1O43516 503 aa6.88□□□□□ -1.31
CD44-237ENST00000534082 TRAK2O60296 914 aa6.88□□□□□ -1.31
CD44-237ENST00000534082 DFNA5O60443 496 aa6.88□□□□□ -1.31
CD44-237ENST00000534082 OAS1P00973 400 aaKnown RBP6.88□□□□□ -1.31
CD44-237ENST00000534082 ITGAVP06756 1048 aa6.88□□□□□ -1.31
CD44-237ENST00000534082 ABCB4P21439 1286 aa6.88□□□□□ -1.31
CD44-237ENST00000534082 ACAT1P24752 427 aaKnown RBP6.88□□□□□ -1.31
CD44-237ENST00000534082 RPA1P27694 616 aa6.88□□□□□ -1.31
CD44-237ENST00000534082 ERVPABLB-1P60509 514 aa6.88□□□□□ -1.31
CD44-237ENST00000534082 AAMPQ13685 434 aa6.88□□□□□ -1.31
CD44-237ENST00000534082 CFAP221Q4G0U5 840 aa6.88□□□□□ -1.31
CD44-237ENST00000534082 INTS6LQ5JSJ4 861 aaKnown RBP6.88□□□□□ -1.31
CD44-237ENST00000534082 PPP1R26Q5T8A7 1209 aaPredicted RBP6.88□□□□□ -1.31
CD44-237ENST00000534082 ZPBP2Q6X784 338 aa6.88□□□□□ -1.31
CD44-237ENST00000534082 FAM124AQ86V42 546 aa6.88□□□□□ -1.31
CD44-237ENST00000534082 TMEM25Q86YD3 366 aa6.88□□□□□ -1.31
Retrieved 100 of 20,778 RNA–protein pairs in 28.9 ms