RNA–Protein interactions for RNA: ENST00000528455.5

CD44-228, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 687 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-228ENST00000528455 C11orf84Q9BUA3 381 aaPredicted RBP7.81□□□□□ -1.16
CD44-228ENST00000528455 HERC2P3Q9BVR0 1158 aa7.81□□□□□ -1.16
CD44-228ENST00000528455 VN1R3Q9BXE9 311 aa7.81□□□□□ -1.16
CD44-228ENST00000528455 B3GNT5Q9BYG0 378 aa7.81□□□□□ -1.16
CD44-228ENST00000528455 CSNK1G1Q9HCP0 422 aa7.81□□□□□ -1.16
CD44-228ENST00000528455 ABCB6Q9NP58 842 aa7.81□□□□□ -1.16
CD44-228ENST00000528455 CRTAC1Q9NQ79 661 aa7.81□□□□□ -1.16
CD44-228ENST00000528455 KCND1Q9NSA2 647 aa7.81□□□□□ -1.16
CD44-228ENST00000528455 HESX1Q9UBX0 185 aa7.81□□□□□ -1.16
CD44-228ENST00000528455 SALL4Q9UJQ4 1053 aa7.81□□□□□ -1.16
CD44-228ENST00000528455 WDR3Q9UNX4 943 aaKnown RBP eCLIP7.81□□□□□ -1.16
CD44-228ENST00000528455 CEP83Q9Y592 693 aa7.81□□□□□ -1.16
CD44-228ENST00000528455 TTC28Q96AY4 2481 aa7.81□□□□□ -1.16
CD44-228ENST00000528455 MTCL1Q9Y4B5 1905 aaKnown RBP7.8□□□□□ -1.16
CD44-228ENST00000528455 ANKRD62A6NC57 917 aa7.8□□□□□ -1.16
CD44-228ENST00000528455 ANKRD33BA6NCL7 494 aa7.8□□□□□ -1.16
CD44-228ENST00000528455 FTLP02792 175 aaPredicted RBP7.8□□□□□ -1.16
CD44-228ENST00000528455 CPB1P15086 417 aa7.8□□□□□ -1.16
CD44-228ENST00000528455 HOXB4P17483 251 aaPredicted RBP7.8□□□□□ -1.16
CD44-228ENST00000528455 ACAT1P24752 427 aaKnown RBP7.8□□□□□ -1.16
CD44-228ENST00000528455 OR1D2P34982 312 aa7.8□□□□□ -1.16
CD44-228ENST00000528455 MAGEA1P43355 309 aa7.8□□□□□ -1.16
CD44-228ENST00000528455 MAGEA11P43364 429 aa7.8□□□□□ -1.16
CD44-228ENST00000528455 GABRB2P47870 512 aa7.8□□□□□ -1.16
CD44-228ENST00000528455 RPL34P49207 117 aaKnown RBP7.8□□□□□ -1.16
CD44-228ENST00000528455 TUFMP49411 452 aaKnown RBP7.8□□□□□ -1.16
CD44-228ENST00000528455 KIF11P52732 1056 aa7.8□□□□□ -1.16
CD44-228ENST00000528455 ERVFC1P60507 584 aa7.8□□□□□ -1.16
CD44-228ENST00000528455 TFF2Q03403 129 aa7.8□□□□□ -1.16
CD44-228ENST00000528455 GFPT1Q06210 699 aaPredicted RBP7.8□□□□□ -1.16
CD44-228ENST00000528455 HYAL2Q12891 473 aa7.8□□□□□ -1.16
CD44-228ENST00000528455 PSMD5Q16401 504 aa7.8□□□□□ -1.16
CD44-228ENST00000528455 CLEC16AQ2KHT3 1053 aa7.8□□□□□ -1.16
CD44-228ENST00000528455 CFAP221Q4G0U5 840 aa7.8□□□□□ -1.16
CD44-228ENST00000528455 RAD9BQ6WBX8 426 aa7.8□□□□□ -1.16
CD44-228ENST00000528455 C20orf204Q6ZNR8 217 aa7.8□□□□□ -1.16
CD44-228ENST00000528455 TMEM110Q86TL2 294 aa7.8□□□□□ -1.16
CD44-228ENST00000528455 FAM35AQ86V20 835 aa7.8□□□□□ -1.16
CD44-228ENST00000528455 ERICH1Q86X53 443 aa7.8□□□□□ -1.16
CD44-228ENST00000528455 PHF13Q86YI8 300 aaPredicted RBP7.8□□□□□ -1.16
CD44-228ENST00000528455 FUKQ8N0W3 1084 aa7.8□□□□□ -1.16
CD44-228ENST00000528455 OR10T2Q8NGX3 314 aa7.8□□□□□ -1.16
CD44-228ENST00000528455 SPPL2BQ8TCT7 592 aa7.8□□□□□ -1.16
CD44-228ENST00000528455 SLC20A1Q8WUM9 679 aa7.8□□□□□ -1.16
CD44-228ENST00000528455 UBE2Q2Q8WVN8 375 aa7.8□□□□□ -1.16
CD44-228ENST00000528455 POF1BQ8WVV4 589 aa7.8□□□□□ -1.16
CD44-228ENST00000528455 KCTD13Q8WZ19 329 aa7.8□□□□□ -1.16
CD44-228ENST00000528455 HSFY1Q96LI6 401 aa7.8□□□□□ -1.16
CD44-228ENST00000528455 NOX5Q96PH1 765 aa7.8□□□□□ -1.16
CD44-228ENST00000528455 PCDHB18PQ96TA0 734 aa7.8□□□□□ -1.16
CD44-228ENST00000528455 MIS12Q9H081 205 aa7.8□□□□□ -1.16
CD44-228ENST00000528455 LMAN2LQ9H0V9 348 aa7.8□□□□□ -1.16
CD44-228ENST00000528455 KCNF1Q9H3M0 494 aa7.8□□□□□ -1.16
CD44-228ENST00000528455 DPEP3Q9H4B8 488 aa7.8□□□□□ -1.16
CD44-228ENST00000528455 ALG13Q9NP73 1137 aaKnown RBP7.8□□□□□ -1.16
CD44-228ENST00000528455 PNPLA8Q9NP80 782 aa7.8□□□□□ -1.16
CD44-228ENST00000528455 ENAMQ9NRM1 1142 aa7.8□□□□□ -1.16
CD44-228ENST00000528455 HMGXB4Q9UGU5 601 aa7.8□□□□□ -1.16
CD44-228ENST00000528455 TSPAN16Q9UKR8 245 aa7.8□□□□□ -1.16
CD44-228ENST00000528455 NENFQ9UMX5 172 aa7.8□□□□□ -1.16
CD44-228ENST00000528455 PCDHB5Q9Y5E4 795 aa7.8□□□□□ -1.16
CD44-228ENST00000528455 PCDHA13Q9Y5I0 950 aa7.8□□□□□ -1.16
CD44-228ENST00000528455 PLXNA4Q9HCM2 1894 aa7.8□□□□□ -1.16
CD44-228ENST00000528455 ATP8B3O60423 1300 aa7.79□□□□□ -1.16
CD44-228ENST00000528455 NCOR1O75376 2440 aa7.79□□□□□ -1.16
CD44-228ENST00000528455 EIF1AYO14602 144 aaKnown RBP7.79□□□□□ -1.16
CD44-228ENST00000528455 ZNF263O14978 683 aa7.79□□□□□ -1.16
CD44-228ENST00000528455 XPO1O14980 1071 aaKnown RBP7.79□□□□□ -1.16
CD44-228ENST00000528455 PJA2O43164 708 aa7.79□□□□□ -1.16
CD44-228ENST00000528455 CCP110O43303 1012 aa7.79□□□□□ -1.16
CD44-228ENST00000528455 ZSCAN12O43309 604 aa7.79□□□□□ -1.16
CD44-228ENST00000528455 HCRTO43612 131 aa7.79□□□□□ -1.16
CD44-228ENST00000528455 CALCAP01258 141 aa7.79□□□□□ -1.16
CD44-228ENST00000528455 URODP06132 367 aa7.79□□□□□ -1.16
CD44-228ENST00000528455 H2AFZP0C0S5 128 aa7.79□□□□□ -1.16
CD44-228ENST00000528455 CCDC175P0C221 793 aa7.79□□□□□ -1.16
CD44-228ENST00000528455 ATF2P15336 505 aa7.79□□□□□ -1.16
CD44-228ENST00000528455 MMP8P22894 467 aa7.79□□□□□ -1.16
CD44-228ENST00000528455 ACADSBP45954 432 aa7.79□□□□□ -1.16
CD44-228ENST00000528455 NDUFV1P49821 464 aa7.79□□□□□ -1.16
CD44-228ENST00000528455 BCAT1P54687 386 aa7.79□□□□□ -1.16
CD44-228ENST00000528455 NOMO3P69849 1222 aa7.79□□□□□ -1.16
CD44-228ENST00000528455 GPC5P78333 572 aa7.79□□□□□ -1.16
CD44-228ENST00000528455 CYP27A1Q02318 531 aa7.79□□□□□ -1.16
CD44-228ENST00000528455 BST2Q10589 180 aaKnown RBP7.79□□□□□ -1.16
CD44-228ENST00000528455 CAMK1Q14012 370 aa7.79□□□□□ -1.16
CD44-228ENST00000528455 ZNF268Q14587 947 aaPredicted RBP7.79□□□□□ -1.16
CD44-228ENST00000528455 SMC1AQ14683 1233 aaKnown RBP7.79□□□□□ -1.16
CD44-228ENST00000528455 MTF1Q14872 753 aa7.79□□□□□ -1.16
CD44-228ENST00000528455 TCEAL1Q15170 157 aa7.79□□□□□ -1.16
CD44-228ENST00000528455 SLC39A12Q504Y0 691 aa7.79□□□□□ -1.16
CD44-228ENST00000528455 MDH1BQ5I0G3 518 aa7.79□□□□□ -1.16
CD44-228ENST00000528455 PERM1Q5SV97 790 aa7.79□□□□□ -1.16
CD44-228ENST00000528455 TAF3Q5VWG9 929 aa7.79□□□□□ -1.16
CD44-228ENST00000528455 DENND1BQ6P3S1 775 aa7.79□□□□□ -1.16
CD44-228ENST00000528455 LILRA6Q6PI73 481 aa7.79□□□□□ -1.16
CD44-228ENST00000528455 PRSS55Q6UWB4 352 aaPredicted RBP7.79□□□□□ -1.16
CD44-228ENST00000528455 RSPO2Q6UXX9 243 aaPredicted RBP7.79□□□□□ -1.16
CD44-228ENST00000528455 H2AFVQ71UI9 128 aa7.79□□□□□ -1.16
CD44-228ENST00000528455 TTC30AQ86WT1 665 aa7.79□□□□□ -1.16
Retrieved 100 of 20,778 RNA–protein pairs in 19.3 ms