RNA–Protein interactions for RNA: ENST00000526734.5

VPS28-206, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 2

Gene VPS28, Length 570 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-206ENST00000526734 KRT5P13647 590 aa21.61■■□□□ 1.05
VPS28-206ENST00000526734 TNFRSF4P43489 277 aa21.61■■□□□ 1.05
VPS28-206ENST00000526734 EFEMP1Q12805 493 aa21.61■■□□□ 1.05
VPS28-206ENST00000526734 ANO4Q32M45 955 aa21.61■■□□□ 1.05
VPS28-206ENST00000526734 GPR161Q8N6U8 529 aaKnown RBP21.61■■□□□ 1.05
VPS28-206ENST00000526734 KCNV2Q8TDN2 545 aa21.61■■□□□ 1.05
VPS28-206ENST00000526734 RNF139Q8WU17 664 aa21.61■■□□□ 1.05
VPS28-206ENST00000526734 WBP2Q969T9 261 aa21.61■■□□□ 1.05
VPS28-206ENST00000526734 PLD4Q96BZ4 506 aa21.61■■□□□ 1.05
VPS28-206ENST00000526734 XPO6Q96QU8 1125 aaKnown RBP21.61■■□□□ 1.05
VPS28-206ENST00000526734 ABCC13Q9NSE7 274 aa21.61■■□□□ 1.05
VPS28-206ENST00000526734 NCDNQ9UBB6 729 aa21.61■■□□□ 1.05
VPS28-206ENST00000526734 NUDT5Q9UKK9 219 aa21.61■■□□□ 1.05
VPS28-206ENST00000526734 K7EQS6 105 aa21.6■■□□□ 1.05
VPS28-206ENST00000526734 SART1O43290 800 aaKnown RBP21.6■■□□□ 1.05
VPS28-206ENST00000526734 CACNG3O60359 315 aa21.6■■□□□ 1.05
VPS28-206ENST00000526734 CHKAP35790 457 aa21.6■■□□□ 1.05
VPS28-206ENST00000526734 DAOAP59103 153 aa21.6■■□□□ 1.05
VPS28-206ENST00000526734 DMC1Q14565 340 aa21.6■■□□□ 1.05
VPS28-206ENST00000526734 LAIR1Q6GTX8 287 aa21.6■■□□□ 1.05
VPS28-206ENST00000526734 BHLHA9Q7RTU4 235 aa21.6■■□□□ 1.05
VPS28-206ENST00000526734 TMEM25Q86YD3 366 aa21.6■■□□□ 1.05
VPS28-206ENST00000526734 GOLGA1Q92805 767 aa21.6■■□□□ 1.05
VPS28-206ENST00000526734 HINFPQ9BQA5 517 aa21.6■■□□□ 1.05
VPS28-206ENST00000526734 CRACR2AQ9BSW2 395 aa21.6■■□□□ 1.05
VPS28-206ENST00000526734 C2orf42Q9NWW7 574 aa21.6■■□□□ 1.05
VPS28-206ENST00000526734 GMEB2Q9UKD1 530 aa21.6■■□□□ 1.05
VPS28-206ENST00000526734 HBS1LQ9Y450 684 aaKnown RBP21.6■■□□□ 1.05
VPS28-206ENST00000526734 TULP3O75386 442 aa21.59■■□□□ 1.05
VPS28-206ENST00000526734 APBB3O95704 486 aa21.59■■□□□ 1.05
VPS28-206ENST00000526734 MBD3O95983 291 aa21.59■■□□□ 1.05
VPS28-206ENST00000526734 ACADSBP45954 432 aa21.59■■□□□ 1.05
VPS28-206ENST00000526734 SLC6A11P48066 632 aa21.59■■□□□ 1.05
VPS28-206ENST00000526734 BSPRYQ5W0U4 402 aa21.59■■□□□ 1.05
VPS28-206ENST00000526734 RBM43Q6ZSC3 357 aaKnown RBP21.59■■□□□ 1.05
VPS28-206ENST00000526734 TRMT11Q7Z4G4 463 aaKnown RBP21.59■■□□□ 1.05
VPS28-206ENST00000526734 C12orf40Q86WS4 652 aa21.59■■□□□ 1.05
VPS28-206ENST00000526734 PHTF2Q8N3S3 785 aa21.59■■□□□ 1.05
VPS28-206ENST00000526734 STK32AQ8WU08 396 aa21.59■■□□□ 1.05
VPS28-206ENST00000526734 ZSWIM1Q9BR11 485 aa21.59■■□□□ 1.05
VPS28-206ENST00000526734 TUBGCP2Q9BSJ2 902 aa21.59■■□□□ 1.05
VPS28-206ENST00000526734 TRIM62Q9BVG3 475 aa21.59■■□□□ 1.05
VPS28-206ENST00000526734 BBS2Q9BXC9 721 aa21.59■■□□□ 1.05
VPS28-206ENST00000526734 NDST4Q9H3R1 872 aa21.59■■□□□ 1.05
VPS28-206ENST00000526734 MMP17Q9ULZ9 603 aa21.59■■□□□ 1.05
VPS28-206ENST00000526734 SLC9A1P19634 815 aa21.58■■□□□ 1.05
VPS28-206ENST00000526734 EEF1GP26641 437 aaKnown RBP21.58■■□□□ 1.05
VPS28-206ENST00000526734 DMWDQ09019 674 aa21.58■■□□□ 1.05
VPS28-206ENST00000526734 SIM2Q14190 667 aaPredicted RBP21.58■■□□□ 1.05
VPS28-206ENST00000526734 HEATR6Q6AI08 1181 aaKnown RBP21.58■■□□□ 1.05
VPS28-206ENST00000526734 GRAMD4Q6IC98 578 aa21.58■■□□□ 1.05
VPS28-206ENST00000526734 PMF1Q6P1K2 205 aa21.58■■□□□ 1.05
VPS28-206ENST00000526734 TERB1Q8NA31 727 aa21.58■■□□□ 1.05
VPS28-206ENST00000526734 SHC3Q92529 594 aa21.58■■□□□ 1.05
VPS28-206ENST00000526734 EBF1Q9UH73 591 aa21.58■■□□□ 1.05
VPS28-206ENST00000526734 PTPRZ1P23471 2315 aaPredicted RBP21.58■■□□□ 1.04
VPS28-206ENST00000526734 SLC12A8A0AV02 714 aa21.57■■□□□ 1.04
VPS28-206ENST00000526734 YJEFN3A6XGL0 299 aa21.57■■□□□ 1.04
VPS28-206ENST00000526734 E7ENQ6 273 aa21.57■■□□□ 1.04
VPS28-206ENST00000526734 NEDD8-MDP1E9PL57 170 aa21.57■■□□□ 1.04
VPS28-206ENST00000526734 LATS1O95835 1130 aa21.57■■□□□ 1.04
VPS28-206ENST00000526734 LCP1P13796 627 aa21.57■■□□□ 1.04
VPS28-206ENST00000526734 TYRP14679 529 aa21.57■■□□□ 1.04
VPS28-206ENST00000526734 PON1P27169 355 aa21.57■■□□□ 1.04
VPS28-206ENST00000526734 GNA15P30679 374 aa21.57■■□□□ 1.04
VPS28-206ENST00000526734 CORO1AP31146 461 aaKnown RBP21.57■■□□□ 1.04
VPS28-206ENST00000526734 RPL34P49207 117 aaKnown RBP21.57■■□□□ 1.04
VPS28-206ENST00000526734 RGS7P49802 495 aa21.57■■□□□ 1.04
VPS28-206ENST00000526734 ZNF445P59923 1031 aa21.57■■□□□ 1.04
VPS28-206ENST00000526734 KDSRQ06136 332 aa21.57■■□□□ 1.04
VPS28-206ENST00000526734 VWA3BQ502W6 1294 aa21.57■■□□□ 1.04
VPS28-206ENST00000526734 EOGTQ5NDL2 527 aa21.57■■□□□ 1.04
VPS28-206ENST00000526734 MSANTD2Q6P1R3 559 aa21.57■■□□□ 1.04
VPS28-206ENST00000526734 CPXM2Q8N436 756 aa21.57■■□□□ 1.04
VPS28-206ENST00000526734 TSTD1Q8NFU3 115 aa21.57■■□□□ 1.04
VPS28-206ENST00000526734 ENOX1Q8TC92 643 aaKnown RBP21.57■■□□□ 1.04
VPS28-206ENST00000526734 GAB3Q8WWW8 586 aa21.57■■□□□ 1.04
VPS28-206ENST00000526734 DNAJC17Q9NVM6 304 aaKnown RBP21.57■■□□□ 1.04
VPS28-206ENST00000526734 GVINP1Q7Z2Y8 2422 aa21.57■■□□□ 1.04
VPS28-206ENST00000526734 OTOGLQ3ZCN5 2332 aa21.56■■□□□ 1.04
VPS28-206ENST00000526734 TBC1D3BA6NDS4 549 aa21.56■■□□□ 1.04
VPS28-206ENST00000526734 KCNJ18B7U540 433 aa21.56■■□□□ 1.04
VPS28-206ENST00000526734 AXIN1O15169 862 aa21.56■■□□□ 1.04
VPS28-206ENST00000526734 THAP12O43422 761 aa21.56■■□□□ 1.04
VPS28-206ENST00000526734 HRO43593 1189 aa21.56■■□□□ 1.04
VPS28-206ENST00000526734 LETM1O95202 739 aaPredicted RBP21.56■■□□□ 1.04
VPS28-206ENST00000526734 LTFP02788 710 aa21.56■■□□□ 1.04
VPS28-206ENST00000526734 KLKB1P03952 638 aa21.56■■□□□ 1.04
VPS28-206ENST00000526734 CYBBP04839 570 aa21.56■■□□□ 1.04
VPS28-206ENST00000526734 GPD2P43304 727 aa21.56■■□□□ 1.04
VPS28-206ENST00000526734 KIR2DL1P43626 348 aaPredicted RBP21.56■■□□□ 1.04
VPS28-206ENST00000526734 HARS2P49590 506 aaKnown RBP21.56■■□□□ 1.04
VPS28-206ENST00000526734 DGKEP52429 567 aa21.56■■□□□ 1.04
VPS28-206ENST00000526734 SEC13P55735 322 aa21.56■■□□□ 1.04
VPS28-206ENST00000526734 KCNJ12Q14500 433 aa21.56■■□□□ 1.04
VPS28-206ENST00000526734 TRIP4Q15650 581 aaPredicted RBP21.56■■□□□ 1.04
VPS28-206ENST00000526734 C2orf27AQ580R0 203 aa21.56■■□□□ 1.04
VPS28-206ENST00000526734 PRR23BQ6ZRT6 265 aa21.56■■□□□ 1.04
VPS28-206ENST00000526734 CEP68Q76N32 757 aa21.56■■□□□ 1.04
VPS28-206ENST00000526734 GPT2Q8TD30 523 aa21.56■■□□□ 1.04
Retrieved 100 of 20,778 RNA–protein pairs in 39.2 ms