RNA–Protein interactions for RNA: ENST00000526025.1

CD44-222, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2 BASIC

Gene CD44, Length 1,052 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-222ENST00000526025 KPNA1P52294 538 aaPredicted RBP21.7■■□□□ 1.06
CD44-222ENST00000526025 COG7P83436 770 aa21.7■■□□□ 1.06
CD44-222ENST00000526025 GOLGA8FQ08AF8 430 aa21.7■■□□□ 1.06
CD44-222ENST00000526025 GOLGA8DPQ0D2H9 430 aa21.7■■□□□ 1.06
CD44-222ENST00000526025 NNTQ13423 1086 aa21.7■■□□□ 1.06
CD44-222ENST00000526025 ASTE1Q2TB18 679 aaPredicted RBP21.7■■□□□ 1.06
CD44-222ENST00000526025 MCOLN2Q8IZK6 566 aa21.7■■□□□ 1.06
CD44-222ENST00000526025 SLC44A3Q8N4M1 653 aa21.7■■□□□ 1.06
CD44-222ENST00000526025 KHSRPQ92945 711 aaKnown RBP eCLIP21.7■■□□□ 1.06
CD44-222ENST00000526025 TRIM11Q96F44 468 aa21.7■■□□□ 1.06
CD44-222ENST00000526025 NECAB3Q96P71 396 aaPredicted RBP21.7■■□□□ 1.06
CD44-222ENST00000526025 KLF16Q9BXK1 252 aaPredicted RBP21.7■■□□□ 1.06
CD44-222ENST00000526025 SMG9Q9H0W8 520 aaKnown RBP21.7■■□□□ 1.06
CD44-222ENST00000526025 SMOC2Q9H3U7 446 aa21.7■■□□□ 1.06
CD44-222ENST00000526025 CD320Q9NPF0 282 aa21.7■■□□□ 1.06
CD44-222ENST00000526025 RRN3Q9NYV6 651 aa21.7■■□□□ 1.06
CD44-222ENST00000526025 MARCH2Q9P0N8 246 aa21.7■■□□□ 1.06
CD44-222ENST00000526025 NENFQ9UMX5 172 aa21.7■■□□□ 1.06
CD44-222ENST00000526025 HBS1LQ9Y450 684 aaKnown RBP21.7■■□□□ 1.06
CD44-222ENST00000526025 LEFTY2O00292 366 aa21.69■■□□□ 1.06
CD44-222ENST00000526025 TBX18O95935 607 aa21.69■■□□□ 1.06
CD44-222ENST00000526025 ASGR2P07307 311 aa21.69■■□□□ 1.06
CD44-222ENST00000526025 NCAM1P13591 858 aa21.69■■□□□ 1.06
CD44-222ENST00000526025 EIF4A3P38919 411 aaKnown RBP21.69■■□□□ 1.06
CD44-222ENST00000526025 MRE11P49959 708 aa21.69■■□□□ 1.06
CD44-222ENST00000526025 SLC18A3Q16572 532 aa21.69■■□□□ 1.06
CD44-222ENST00000526025 C3orf20Q8ND61 904 aa21.69■■□□□ 1.06
CD44-222ENST00000526025 SH3RF2Q8TEC5 729 aa21.69■■□□□ 1.06
CD44-222ENST00000526025 EDEM1Q92611 657 aa21.69■■□□□ 1.06
CD44-222ENST00000526025 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP21.69■■□□□ 1.06
CD44-222ENST00000526025 PLA2G2FQ9BZM2 168 aa21.69■■□□□ 1.06
CD44-222ENST00000526025 THG1LQ9NWX6 298 aaKnown RBP21.69■■□□□ 1.06
CD44-222ENST00000526025 TAS2R14Q9NYV8 317 aa21.69■■□□□ 1.06
CD44-222ENST00000526025 A0A087X0T9 212 aa21.68■■□□□ 1.06
CD44-222ENST00000526025 E2F8A0AVK6 867 aa21.68■■□□□ 1.06
CD44-222ENST00000526025 CAPN9O14815 690 aa21.68■■□□□ 1.06
CD44-222ENST00000526025 FAM228BP0C875 321 aa21.68■■□□□ 1.06
CD44-222ENST00000526025 MYBL1P10243 752 aa21.68■■□□□ 1.06
CD44-222ENST00000526025 ZXDBP98169 803 aa21.68■■□□□ 1.06
CD44-222ENST00000526025 EFEMP1Q12805 493 aa21.68■■□□□ 1.06
CD44-222ENST00000526025 MTF1Q14872 753 aa21.68■■□□□ 1.06
CD44-222ENST00000526025 TAF5Q15542 800 aa21.68■■□□□ 1.06
CD44-222ENST00000526025 ARHGAP29Q52LW3 1261 aa21.68■■□□□ 1.06
CD44-222ENST00000526025 FAM102AQ5T9C2 384 aaPredicted RBP21.68■■□□□ 1.06
CD44-222ENST00000526025 UBALD2Q8IYN6 164 aa21.68■■□□□ 1.06
CD44-222ENST00000526025 RSAD2Q8WXG1 361 aa21.68■■□□□ 1.06
CD44-222ENST00000526025 LRRC3BQ96PB8 259 aa21.68■■□□□ 1.06
CD44-222ENST00000526025 RPP25Q9BUL9 199 aaKnown RBP21.68■■□□□ 1.06
CD44-222ENST00000526025 TRMT61BQ9BVS5 477 aaKnown RBP21.68■■□□□ 1.06
CD44-222ENST00000526025 TRPV5Q9NQA5 729 aa21.68■■□□□ 1.06
CD44-222ENST00000526025 SLC2A4RGQ9NR83 387 aa21.68■■□□□ 1.06
CD44-222ENST00000526025 TMEM59LQ9UK28 342 aa21.68■■□□□ 1.06
CD44-222ENST00000526025 NUDT5Q9UKK9 219 aa21.68■■□□□ 1.06
CD44-222ENST00000526025 DUSP12Q9UNI6 340 aa21.68■■□□□ 1.06
CD44-222ENST00000526025 COL4A2P08572 1712 aa21.68■■□□□ 1.06
CD44-222ENST00000526025 TCRBV5S1A1TA0A578 114 aa21.67■■□□□ 1.06
CD44-222ENST00000526025 CHADO15335 359 aa21.67■■□□□ 1.06
CD44-222ENST00000526025 IGLV3-25P01717 112 aa21.67■■□□□ 1.06
CD44-222ENST00000526025 FTLP02792 175 aaPredicted RBP21.67■■□□□ 1.06
CD44-222ENST00000526025 SRFP11831 508 aa21.67■■□□□ 1.06
CD44-222ENST00000526025 NOS2P35228 1153 aa21.67■■□□□ 1.06
CD44-222ENST00000526025 MATKP42679 507 aa21.67■■□□□ 1.06
CD44-222ENST00000526025 C2CD6Q53TS8 623 aa21.67■■□□□ 1.06
CD44-222ENST00000526025 ALKBH5Q6P6C2 394 aaKnown RBP21.67■■□□□ 1.06
CD44-222ENST00000526025 YAF2Q8IY57 180 aa21.67■■□□□ 1.06
CD44-222ENST00000526025 DEFB106AQ8N104 65 aa21.67■■□□□ 1.06
CD44-222ENST00000526025 DQX1Q8TE96 717 aaKnown RBP21.67■■□□□ 1.06
CD44-222ENST00000526025 PLD4Q96BZ4 506 aa21.67■■□□□ 1.06
CD44-222ENST00000526025 SERPINB11Q96P15 392 aa21.67■■□□□ 1.06
CD44-222ENST00000526025 DEF6Q9H4E7 631 aa21.67■■□□□ 1.06
CD44-222ENST00000526025 NHEJ1Q9H9Q4 299 aaPredicted RBP21.67■■□□□ 1.06
CD44-222ENST00000526025 SMPD4Q9NXE4 827 aa21.67■■□□□ 1.06
CD44-222ENST00000526025 RASAL2Q9UJF2 1139 aa21.67■■□□□ 1.06
CD44-222ENST00000526025 NAALADL1Q9UQQ1 740 aa21.67■■□□□ 1.06
CD44-222ENST00000526025 VCANP13611 3396 aa21.67■■□□□ 1.06
CD44-222ENST00000526025 SLC9A3R1O14745 358 aaPredicted RBP21.66■■□□□ 1.06
CD44-222ENST00000526025 MDM4O15151 490 aa21.66■■□□□ 1.06
CD44-222ENST00000526025 GSDMDP57764 484 aa21.66■■□□□ 1.06
CD44-222ENST00000526025 RING1Q06587 406 aa21.66■■□□□ 1.06
CD44-222ENST00000526025 PDGFRLQ15198 375 aa21.66■■□□□ 1.06
CD44-222ENST00000526025 SYPL2Q5VXT5 272 aa21.66■■□□□ 1.06
CD44-222ENST00000526025 CC2D1AQ6P1N0 951 aaPredicted RBP21.66■■□□□ 1.06
CD44-222ENST00000526025 HTR3DQ70Z44 454 aa21.66■■□□□ 1.06
CD44-222ENST00000526025 MIB1Q86YT6 1006 aa21.66■■□□□ 1.06
CD44-222ENST00000526025 RIN3Q8TB24 985 aa21.66■■□□□ 1.06
CD44-222ENST00000526025 DNASE1L2Q92874 299 aa21.66■■□□□ 1.06
CD44-222ENST00000526025 IRF7Q92985 503 aa21.66■■□□□ 1.06
CD44-222ENST00000526025 NT5C3BQ969T7 300 aa21.66■■□□□ 1.06
CD44-222ENST00000526025 OTUB2Q96DC9 234 aa21.66■■□□□ 1.06
CD44-222ENST00000526025 CCDC42Q96M95 316 aa21.66■■□□□ 1.06
CD44-222ENST00000526025 CHP1Q99653 195 aa21.66■■□□□ 1.06
CD44-222ENST00000526025 DCLK3Q9C098 648 aa21.66■■□□□ 1.06
CD44-222ENST00000526025 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP21.66■■□□□ 1.06
CD44-222ENST00000526025 CFAP97Q9P2B7 532 aa21.66■■□□□ 1.06
CD44-222ENST00000526025 TBC1D14Q9P2M4 693 aa21.66■■□□□ 1.06
CD44-222ENST00000526025 LSM7Q9UK45 103 aaKnown RBP21.66■■□□□ 1.06
CD44-222ENST00000526025 STAP1Q9ULZ2 295 aa21.66■■□□□ 1.06
CD44-222ENST00000526025 TICRRQ7Z2Z1 1910 aa21.66■■□□□ 1.06
CD44-222ENST00000526025 SIGLEC16A6NMB1 481 aa21.65■■□□□ 1.06
CD44-222ENST00000526025 GOLGA8SH3BPF8 625 aa21.65■■□□□ 1.06
Retrieved 100 of 20,778 RNA–protein pairs in 23.5 ms