RNA–Protein interactions for RNA: ENST00000515516.1

TCOF1-215, Transcript of treacle ribosome biogenesis factor 1, humanhuman

TSL 5

Gene TCOF1, Length 661 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-215ENST00000515516 DENND4CQ5VZ89 1909 aa14.35□□□□□ -0.11
TCOF1-215ENST00000515516 ZNF638Q14966 1978 aaKnown RBP14.35□□□□□ -0.11
TCOF1-215ENST00000515516 BIN1O00499 593 aa14.35□□□□□ -0.11
TCOF1-215ENST00000515516 XPO1O14980 1071 aaKnown RBP14.35□□□□□ -0.11
TCOF1-215ENST00000515516 DCLK1O15075 740 aa14.35□□□□□ -0.11
TCOF1-215ENST00000515516 ZBED1O96006 694 aa14.35□□□□□ -0.11
TCOF1-215ENST00000515516 VDRP11473 427 aa14.35□□□□□ -0.11
TCOF1-215ENST00000515516 TYRP14679 529 aa14.35□□□□□ -0.11
TCOF1-215ENST00000515516 CD44P16070 742 aaKnown RBP14.35□□□□□ -0.11
TCOF1-215ENST00000515516 TKTL1P51854 596 aa14.35□□□□□ -0.11
TCOF1-215ENST00000515516 YWHAGP61981 247 aaKnown RBP eCLIP14.35□□□□□ -0.11
TCOF1-215ENST00000515516 BST2Q10589 180 aaKnown RBP14.35□□□□□ -0.11
TCOF1-215ENST00000515516 EFEMP1Q12805 493 aa14.35□□□□□ -0.11
TCOF1-215ENST00000515516 BYSLQ13895 437 aaKnown RBP14.35□□□□□ -0.11
TCOF1-215ENST00000515516 EMC10Q5UCC4 262 aa14.35□□□□□ -0.11
TCOF1-215ENST00000515516 ETFBKMTQ8IXQ9 262 aa14.35□□□□□ -0.11
TCOF1-215ENST00000515516 ZNF513Q8N8E2 541 aaPredicted RBP14.35□□□□□ -0.11
TCOF1-215ENST00000515516 TERB1Q8NA31 727 aa14.35□□□□□ -0.11
TCOF1-215ENST00000515516 IPO9Q96P70 1041 aaKnown RBP14.35□□□□□ -0.11
TCOF1-215ENST00000515516 TPSD1Q9BZJ3 242 aa14.35□□□□□ -0.11
TCOF1-215ENST00000515516 TSPAN16Q9UKR8 245 aa14.35□□□□□ -0.11
TCOF1-215ENST00000515516 INVSQ9Y283 1065 aa14.35□□□□□ -0.11
TCOF1-215ENST00000515516 PCDHB4Q9Y5E5 795 aa14.35□□□□□ -0.11
TCOF1-215ENST00000515516 PTPRDP23468 1912 aa14.35□□□□□ -0.11
TCOF1-215ENST00000515516 PPP1R3GB7ZBB8 358 aa14.34□□□□□ -0.11
TCOF1-215ENST00000515516 SGK1O00141 431 aa14.34□□□□□ -0.11
TCOF1-215ENST00000515516 PMM2O15305 246 aa14.34□□□□□ -0.11
TCOF1-215ENST00000515516 P4HA2O15460 535 aa14.34□□□□□ -0.11
TCOF1-215ENST00000515516 MAP3K13O43283 966 aa14.34□□□□□ -0.11
TCOF1-215ENST00000515516 GREM1O60565 184 aa14.34□□□□□ -0.11
TCOF1-215ENST00000515516 GADD45BO75293 160 aaPredicted RBP14.34□□□□□ -0.11
TCOF1-215ENST00000515516 STC2O76061 302 aa14.34□□□□□ -0.11
TCOF1-215ENST00000515516 HMBSP08397 361 aa14.34□□□□□ -0.11
TCOF1-215ENST00000515516 ZNF806P0C7X5 589 aa14.34□□□□□ -0.11
TCOF1-215ENST00000515516 CHKAP35790 457 aa14.34□□□□□ -0.11
TCOF1-215ENST00000515516 KIR2DL1P43626 348 aaPredicted RBP14.34□□□□□ -0.11
TCOF1-215ENST00000515516 PDE4CQ08493 712 aa14.34□□□□□ -0.11
TCOF1-215ENST00000515516 MESP2Q0VG99 397 aa14.34□□□□□ -0.11
TCOF1-215ENST00000515516 PAK1Q13153 545 aa14.34□□□□□ -0.11
TCOF1-215ENST00000515516 MORC3Q14149 939 aa14.34□□□□□ -0.11
TCOF1-215ENST00000515516 CCDC6Q16204 474 aa14.34□□□□□ -0.11
TCOF1-215ENST00000515516 RAB41Q5JT25 222 aa14.34□□□□□ -0.11
TCOF1-215ENST00000515516 TTI2Q6NXR4 508 aa14.34□□□□□ -0.11
TCOF1-215ENST00000515516 FOXR2Q6PJQ5 311 aa14.34□□□□□ -0.11
TCOF1-215ENST00000515516 TMEM270Q6UE05 265 aa14.34□□□□□ -0.11
TCOF1-215ENST00000515516 TMEM92Q6UXU6 159 aa14.34□□□□□ -0.11
TCOF1-215ENST00000515516 RASSF3Q86WH2 238 aa14.34□□□□□ -0.11
TCOF1-215ENST00000515516 SFTPA1Q8IWL2 248 aa14.34□□□□□ -0.11
TCOF1-215ENST00000515516 SIX6OS1Q8N1H7 587 aa14.34□□□□□ -0.11
TCOF1-215ENST00000515516 PPM1KQ8N3J5 372 aa14.34□□□□□ -0.11
TCOF1-215ENST00000515516 UBA3Q8TBC4 463 aa14.34□□□□□ -0.11
TCOF1-215ENST00000515516 RNF139Q8WU17 664 aa14.34□□□□□ -0.11
TCOF1-215ENST00000515516 SPACA7Q96KW9 195 aa14.34□□□□□ -0.11
TCOF1-215ENST00000515516 ULBP1Q9BZM6 244 aa14.34□□□□□ -0.11
TCOF1-215ENST00000515516 DUSP15Q9H1R2 295 aaPredicted RBP14.34□□□□□ -0.11
TCOF1-215ENST00000515516 VPS45Q9NRW7 570 aa14.34□□□□□ -0.11
TCOF1-215ENST00000515516 MARK1Q9P0L2 795 aa14.34□□□□□ -0.11
TCOF1-215ENST00000515516 MARCH2Q9P0N8 246 aa14.34□□□□□ -0.11
TCOF1-215ENST00000515516 GREB1Q4ZG55 1949 aa14.33□□□□□ -0.11
TCOF1-215ENST00000515516 ZNF292O60281 2723 aa14.33□□□□□ -0.12
TCOF1-215ENST00000515516 TCRBV21S2A2A0A5A6 115 aa14.33□□□□□ -0.12
TCOF1-215ENST00000515516 SLC12A8A0AV02 714 aa14.33□□□□□ -0.12
TCOF1-215ENST00000515516 DCDC2BA2VCK2 349 aa14.33□□□□□ -0.12
TCOF1-215ENST00000515516 ANTXRLA6NF34 631 aa14.33□□□□□ -0.12
TCOF1-215ENST00000515516 SLC30A4O14863 429 aa14.33□□□□□ -0.12
TCOF1-215ENST00000515516 CACNG3O60359 315 aa14.33□□□□□ -0.12
TCOF1-215ENST00000515516 CYBBP04839 570 aa14.33□□□□□ -0.12
TCOF1-215ENST00000515516 PAEPP09466 180 aa14.33□□□□□ -0.12
TCOF1-215ENST00000515516 SETSIPP0DME0 302 aa14.33□□□□□ -0.12
TCOF1-215ENST00000515516 MPLP40238 635 aa14.33□□□□□ -0.12
TCOF1-215ENST00000515516 DGKGP49619 791 aa14.33□□□□□ -0.12
TCOF1-215ENST00000515516 STX17P56962 302 aa14.33□□□□□ -0.12
TCOF1-215ENST00000515516 CREB5Q02930 508 aa14.33□□□□□ -0.12
TCOF1-215ENST00000515516 IL31Q6EBC2 164 aa14.33□□□□□ -0.12
TCOF1-215ENST00000515516 PHTF2Q8N3S3 785 aa14.33□□□□□ -0.12
TCOF1-215ENST00000515516 MDGA1Q8NFP4 955 aa14.33□□□□□ -0.12
TCOF1-215ENST00000515516 HMGB4Q8WW32 186 aa14.33□□□□□ -0.12
TCOF1-215ENST00000515516 BHMTQ93088 406 aa14.33□□□□□ -0.12
TCOF1-215ENST00000515516 OLA1Q9NTK5 396 aaKnown RBP14.33□□□□□ -0.12
TCOF1-215ENST00000515516 STARD13Q9Y3M8 1113 aa14.33□□□□□ -0.12
TCOF1-215ENST00000515516 UTP18Q9Y5J1 556 aaKnown RBP eCLIP14.33□□□□□ -0.128e-6■■■■■ 36.2
TCOF1-215ENST00000515516 ANAPC1Q9H1A4 1944 aa14.33□□□□□ -0.12
TCOF1-215ENST00000515516 CAVIN2O95810 425 aa14.32□□□□□ -0.12
TCOF1-215ENST00000515516 NTSR1P30989 418 aa14.32□□□□□ -0.12
TCOF1-215ENST00000515516 CORO1AP31146 461 aaKnown RBP14.32□□□□□ -0.12
TCOF1-215ENST00000515516 UBE2HP62256 183 aa14.32□□□□□ -0.12
TCOF1-215ENST00000515516 ADIGQ0VDE8 80 aa14.32□□□□□ -0.12
TCOF1-215ENST00000515516 SF3A2Q15428 464 aaKnown RBP14.32□□□□□ -0.12
TCOF1-215ENST00000515516 STILQ15468 1287 aa14.32□□□□□ -0.12
TCOF1-215ENST00000515516 PM20D1Q6GTS8 502 aa14.32□□□□□ -0.12
TCOF1-215ENST00000515516 Q6ZNB5 142 aa14.32□□□□□ -0.12
TCOF1-215ENST00000515516 CREBRFQ8IUR6 639 aa14.32□□□□□ -0.12
TCOF1-215ENST00000515516 CHPFQ8IZ52 775 aa14.32□□□□□ -0.12
TCOF1-215ENST00000515516 TRIML1Q8N9V2 468 aa14.32□□□□□ -0.12
TCOF1-215ENST00000515516 EHBP1Q8NDI1 1231 aa14.32□□□□□ -0.12
TCOF1-215ENST00000515516 DDX1Q92499 740 aaKnown RBP14.32□□□□□ -0.12
TCOF1-215ENST00000515516 GOLGA1Q92805 767 aa14.32□□□□□ -0.12
TCOF1-215ENST00000515516 SRRTQ9BXP5 876 aaKnown RBP14.32□□□□□ -0.12
TCOF1-215ENST00000515516 ZDHHC4Q9NPG8 344 aa14.32□□□□□ -0.12
TCOF1-215ENST00000515516 MED19A0JLT2 244 aaPredicted RBP14.31□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 10.8 ms