RNA–Protein interactions for RNA: ENST00000515035.5

TCOF1-214, Transcript of treacle ribosome biogenesis factor 1, humanhuman

TSL 2

Gene TCOF1, Length 5,240 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-214ENST00000515035 UBASH3BQ8TF42 649 aa13.68□□□□□ -0.22
TCOF1-214ENST00000515035 PIN4Q9Y237 131 aaKnown RBP13.68□□□□□ -0.22
TCOF1-214ENST00000515035 SPATA31D1Q6ZQQ2 1576 aa13.68□□□□□ -0.22
TCOF1-214ENST00000515035 FAM20BO75063 409 aa13.68□□□□□ -0.22
TCOF1-214ENST00000515035 MT-CO1P00395 513 aa13.68□□□□□ -0.22
TCOF1-214ENST00000515035 CYP11B1P15538 503 aa13.68□□□□□ -0.22
TCOF1-214ENST00000515035 RRM1P23921 792 aa13.68□□□□□ -0.22
TCOF1-214ENST00000515035 TGFB2P61812 414 aa13.68□□□□□ -0.22
TCOF1-214ENST00000515035 BFSP2Q13515 415 aa13.68□□□□□ -0.22
TCOF1-214ENST00000515035 DDX39BQ13838 428 aaKnown RBP13.68□□□□□ -0.22
TCOF1-214ENST00000515035 GOLGA7BQ2TAP0 167 aa13.68□□□□□ -0.22
TCOF1-214ENST00000515035 ZNF618Q5T7W0 954 aa13.68□□□□□ -0.22
TCOF1-214ENST00000515035 MRNIPQ6NTE8 343 aa13.68□□□□□ -0.22
TCOF1-214ENST00000515035 INTS5Q6P9B9 1019 aaKnown RBP13.68□□□□□ -0.22
TCOF1-214ENST00000515035 EXD1Q8NHP7 514 aa13.68□□□□□ -0.22
TCOF1-214ENST00000515035 NSMCE2Q96MF7 247 aa13.68□□□□□ -0.22
TCOF1-214ENST00000515035 MAP3K14Q99558 947 aa13.68□□□□□ -0.22
TCOF1-214ENST00000515035 OLFM1Q99784 485 aa13.68□□□□□ -0.22
TCOF1-214ENST00000515035 EPB41L4AQ9HCS5 686 aaPredicted RBP13.68□□□□□ -0.22
TCOF1-214ENST00000515035 ARHGEF3Q9NR81 526 aa13.68□□□□□ -0.22
TCOF1-214ENST00000515035 IARS2Q9NSE4 1012 aaKnown RBP13.68□□□□□ -0.22
TCOF1-214ENST00000515035 VPS9D1Q9Y2B5 631 aa13.68□□□□□ -0.22
TCOF1-214ENST00000515035 INPP4BO15327 924 aa13.67□□□□□ -0.22
TCOF1-214ENST00000515035 STX7O15400 261 aaKnown RBP13.67□□□□□ -0.22
TCOF1-214ENST00000515035 LDLRP01130 860 aa13.67□□□□□ -0.22
TCOF1-214ENST00000515035 TFRCP02786 760 aaKnown RBP13.67□□□□□ -0.22
TCOF1-214ENST00000515035 RARBP10826 455 aa13.67□□□□□ -0.22
TCOF1-214ENST00000515035 CYP11B2P19099 503 aa13.67□□□□□ -0.22
TCOF1-214ENST00000515035 HUNKP57058 714 aa13.67□□□□□ -0.22
TCOF1-214ENST00000515035 ITGA9Q13797 1035 aa13.67□□□□□ -0.22
TCOF1-214ENST00000515035 C16orf86Q6ZW13 317 aa13.67□□□□□ -0.22
TCOF1-214ENST00000515035 ELMOD1Q8N336 334 aa13.67□□□□□ -0.22
TCOF1-214ENST00000515035 STKLD1Q8NE28 680 aa13.67□□□□□ -0.22
TCOF1-214ENST00000515035 APBB2Q92870 758 aa13.67□□□□□ -0.22
TCOF1-214ENST00000515035 DDX50Q9BQ39 737 aaKnown RBP13.67□□□□□ -0.22
TCOF1-214ENST00000515035 UBE2OQ9C0C9 1292 aaKnown RBP13.67□□□□□ -0.22
TCOF1-214ENST00000515035 PIF1Q9H611 641 aa13.67□□□□□ -0.22
TCOF1-214ENST00000515035 IGSF9BQ9UPX0 1349 aa13.67□□□□□ -0.22
TCOF1-214ENST00000515035 TBKBP1A7MCY6 615 aa13.67□□□□□ -0.22
TCOF1-214ENST00000515035 KRT6BP04259 564 aa13.67□□□□□ -0.22
TCOF1-214ENST00000515035 KRT6CP48668 564 aa13.67□□□□□ -0.22
TCOF1-214ENST00000515035 CDC42EP1Q00587 391 aa13.67□□□□□ -0.22
TCOF1-214ENST00000515035 ALDH6A1Q02252 535 aaKnown RBP13.67□□□□□ -0.22
TCOF1-214ENST00000515035 TLR10Q9BXR5 811 aa13.67□□□□□ -0.22
TCOF1-214ENST00000515035 GPR63Q9BZJ6 419 aa13.67□□□□□ -0.22
TCOF1-214ENST00000515035 HDHD2Q9H0R4 259 aa13.67□□□□□ -0.22
TCOF1-214ENST00000515035 DEFB129Q9H1M3 183 aa13.67□□□□□ -0.22
TCOF1-214ENST00000515035 NRDE2Q9H7Z3 1164 aa13.67□□□□□ -0.22
TCOF1-214ENST00000515035 CROTQ9UKG9 612 aa13.67□□□□□ -0.22
TCOF1-214ENST00000515035 PREX1Q8TCU6 1659 aa13.67□□□□□ -0.22
TCOF1-214ENST00000515035 TNFRSF21O75509 655 aa13.67□□□□□ -0.22
TCOF1-214ENST00000515035 PROSCO94903 275 aa13.67□□□□□ -0.22
TCOF1-214ENST00000515035 SERPINE1P05121 402 aa13.67□□□□□ -0.22
TCOF1-214ENST00000515035 NUP62P37198 522 aaPredicted RBP13.67□□□□□ -0.22
TCOF1-214ENST00000515035 GRB10Q13322 594 aa13.67□□□□□ -0.22
TCOF1-214ENST00000515035 FAM98BQ52LJ0 330 aaKnown RBP13.67□□□□□ -0.22
TCOF1-214ENST00000515035 PRMT9Q6P2P2 845 aa13.67□□□□□ -0.22
TCOF1-214ENST00000515035 CLEC10AQ8IUN9 316 aa13.67□□□□□ -0.22
TCOF1-214ENST00000515035 DHRSXQ8N5I4 330 aa13.67□□□□□ -0.22
TCOF1-214ENST00000515035 OR6J1Q8NGC5 347 aa13.67□□□□□ -0.22
TCOF1-214ENST00000515035 SEPT1Q8WYJ6 367 aa13.67□□□□□ -0.22
TCOF1-214ENST00000515035 TATDN2Q93075 761 aa13.67□□□□□ -0.22
TCOF1-214ENST00000515035 SEMA6BQ9H3T3 888 aa13.67□□□□□ -0.22
TCOF1-214ENST00000515035 COMMD8Q9NX08 183 aa13.67□□□□□ -0.22
TCOF1-214ENST00000515035 SHOC2Q9UQ13 582 aa13.67□□□□□ -0.22
TCOF1-214ENST00000515035 CLCA2Q9UQC9 943 aa13.67□□□□□ -0.22
TCOF1-214ENST00000515035 CENPXA8MT69 81 aa13.67□□□□□ -0.22
TCOF1-214ENST00000515035 IL18RAPO95256 599 aa13.67□□□□□ -0.22
TCOF1-214ENST00000515035 ETFBP38117 255 aa13.67□□□□□ -0.22
TCOF1-214ENST00000515035 RPL21P46778 160 aaKnown RBP13.67□□□□□ -0.22
TCOF1-214ENST00000515035 SLC1A6P48664 564 aa13.67□□□□□ -0.22
TCOF1-214ENST00000515035 CDK16Q00536 496 aa13.67□□□□□ -0.22
TCOF1-214ENST00000515035 PKN2Q16513 984 aaKnown RBP13.67□□□□□ -0.22
TCOF1-214ENST00000515035 TYW3Q6IPR3 259 aaKnown RBP13.67□□□□□ -0.22
TCOF1-214ENST00000515035 C11orf88Q6PI97 169 aa13.67□□□□□ -0.22
TCOF1-214ENST00000515035 SPOCD1Q6ZMY3 1216 aa13.67□□□□□ -0.22
TCOF1-214ENST00000515035 CCDC80Q76M96 950 aa13.67□□□□□ -0.22
TCOF1-214ENST00000515035 KRT78Q8N1N4 520 aa13.67□□□□□ -0.22
TCOF1-214ENST00000515035 CAPSLQ8WWF8 208 aa13.67□□□□□ -0.22
TCOF1-214ENST00000515035 PYDC1Q8WXC3 89 aa13.67□□□□□ -0.22
TCOF1-214ENST00000515035 ZNF75CPQ92670 426 aaPredicted RBP13.67□□□□□ -0.22
TCOF1-214ENST00000515035 FAM210AQ96ND0 272 aa13.67□□□□□ -0.22
TCOF1-214ENST00000515035 DYRK4Q9NR20 520 aa13.67□□□□□ -0.22
TCOF1-214ENST00000515035 THAP1Q9NVV9 213 aa13.67□□□□□ -0.22
TCOF1-214ENST00000515035 CAPZA2P47755 286 aa13.67□□□□□ -0.22
TCOF1-214ENST00000515035 CCT3P49368 545 aaKnown RBP13.67□□□□□ -0.22
TCOF1-214ENST00000515035 SREBF2Q12772 1141 aa13.67□□□□□ -0.22
TCOF1-214ENST00000515035 RGS21Q2M5E4 152 aa13.67□□□□□ -0.22
TCOF1-214ENST00000515035 DGKKQ5KSL6 1271 aa13.67□□□□□ -0.22
TCOF1-214ENST00000515035 ARHGEF19Q8IW93 802 aa13.67□□□□□ -0.22
TCOF1-214ENST00000515035 SLC5A5Q92911 643 aa13.67□□□□□ -0.22
TCOF1-214ENST00000515035 MTIF3Q9H2K0 278 aaKnown RBP13.67□□□□□ -0.22
TCOF1-214ENST00000515035 GPR75-ASB3A0A0A6YYF3 556 aa13.66□□□□□ -0.22
TCOF1-214ENST00000515035 PTGES3LE9PB15 166 aa13.66□□□□□ -0.22
TCOF1-214ENST00000515035 RBP1P09455 135 aa13.66□□□□□ -0.22
TCOF1-214ENST00000515035 CASP4P49662 377 aa13.66□□□□□ -0.22
TCOF1-214ENST00000515035 NCKAP1LP55160 1127 aa13.66□□□□□ -0.22
TCOF1-214ENST00000515035 VEPH1Q14D04 833 aa13.66□□□□□ -0.22
TCOF1-214ENST00000515035 TTMPQ5BVD1 217 aa13.66□□□□□ -0.22
TCOF1-214ENST00000515035 N4BP2L1Q5TBK1 243 aaPredicted RBP13.66□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 39.8 ms