RNA–Protein interactions for RNA: ENST00000511496.5

LIMCH1-213, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 3,439 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-213ENST00000511496 TRIM49CP0CI26 452 aa12.44□□□□□ -0.42
LIMCH1-213ENST00000511496 HSPA1AP0DMV8 641 aaKnown RBP12.44□□□□□ -0.42
LIMCH1-213ENST00000511496 HSPA1BP0DMV9 641 aaKnown RBP12.44□□□□□ -0.42
LIMCH1-213ENST00000511496 PRKCAP17252 672 aa12.44□□□□□ -0.42
LIMCH1-213ENST00000511496 HOXD10P28358 340 aa12.44□□□□□ -0.42
LIMCH1-213ENST00000511496 HSPA1LP34931 641 aa12.44□□□□□ -0.42
LIMCH1-213ENST00000511496 ETV4P43268 484 aa12.44□□□□□ -0.42
LIMCH1-213ENST00000511496 PKNOX1P55347 436 aa12.44□□□□□ -0.42
LIMCH1-213ENST00000511496 PMS2P3Q13401 168 aa12.44□□□□□ -0.42
LIMCH1-213ENST00000511496 ABCB5Q2M3G0 1257 aa12.44□□□□□ -0.42
LIMCH1-213ENST00000511496 C15orf59Q2T9L4 293 aaPredicted RBP12.44□□□□□ -0.42
LIMCH1-213ENST00000511496 ATG16L1Q676U5 607 aa12.44□□□□□ -0.42
LIMCH1-213ENST00000511496 CDHR3Q6ZTQ4 885 aa12.44□□□□□ -0.42
LIMCH1-213ENST00000511496 CHSY1Q86X52 802 aa12.44□□□□□ -0.42
LIMCH1-213ENST00000511496 CATSPER3Q86XQ3 398 aa12.44□□□□□ -0.42
LIMCH1-213ENST00000511496 RDH13Q8NBN7 331 aa12.44□□□□□ -0.42
LIMCH1-213ENST00000511496 C20orf27Q9GZN8 174 aa12.44□□□□□ -0.42
LIMCH1-213ENST00000511496 TRIM39Q9HCM9 518 aa12.44□□□□□ -0.42
LIMCH1-213ENST00000511496 PNPLA3Q9NST1 481 aa12.44□□□□□ -0.42
LIMCH1-213ENST00000511496 GDAP2Q9NXN4 497 aa12.44□□□□□ -0.42
LIMCH1-213ENST00000511496 CDH7Q9ULB5 785 aa12.44□□□□□ -0.42
LIMCH1-213ENST00000511496 ATP8B3O60423 1300 aa12.44□□□□□ -0.42
LIMCH1-213ENST00000511496 MYH14Q7Z406 1995 aaKnown RBP12.44□□□□□ -0.42
LIMCH1-213ENST00000511496 TESPA1A2RU30 521 aaPredicted RBP12.43□□□□□ -0.42
LIMCH1-213ENST00000511496 SLC37A4O43826 429 aa12.43□□□□□ -0.42
LIMCH1-213ENST00000511496 EEF1DP29692 281 aaKnown RBP12.43□□□□□ -0.42
LIMCH1-213ENST00000511496 GRM5P41594 1212 aa12.43□□□□□ -0.42
LIMCH1-213ENST00000511496 GAD2Q05329 585 aa12.43□□□□□ -0.42
LIMCH1-213ENST00000511496 INAVAQ3KP66 663 aa12.43□□□□□ -0.42
LIMCH1-213ENST00000511496 EFHC2Q5JST6 749 aa12.43□□□□□ -0.42
LIMCH1-213ENST00000511496 ATAD3BQ5T9A4 648 aa12.43□□□□□ -0.42
LIMCH1-213ENST00000511496 TTC33Q6PID6 262 aaPredicted RBP12.43□□□□□ -0.42
LIMCH1-213ENST00000511496 KRT25Q7Z3Z0 450 aa12.43□□□□□ -0.42
LIMCH1-213ENST00000511496 RELL1Q8IUW5 271 aa12.43□□□□□ -0.42
LIMCH1-213ENST00000511496 FIBCD1Q8N539 461 aa12.43□□□□□ -0.42
LIMCH1-213ENST00000511496 DCLK2Q8N568 766 aa12.43□□□□□ -0.42
LIMCH1-213ENST00000511496 USP13Q92995 863 aaPredicted RBP12.43□□□□□ -0.42
LIMCH1-213ENST00000511496 MROQ9BYG7 248 aa12.43□□□□□ -0.42
LIMCH1-213ENST00000511496 B3GNT4Q9C0J1 378 aa12.43□□□□□ -0.42
LIMCH1-213ENST00000511496 SSU72Q9NP77 194 aaKnown RBP12.43□□□□□ -0.42
LIMCH1-213ENST00000511496 MTRF1O75570 445 aaKnown RBP12.43□□□□□ -0.42
LIMCH1-213ENST00000511496 TOM1L1O75674 476 aa12.43□□□□□ -0.42
LIMCH1-213ENST00000511496 NR3C1P04150 777 aa12.43□□□□□ -0.42
LIMCH1-213ENST00000511496 BMPR1AP36894 532 aa12.43□□□□□ -0.42
LIMCH1-213ENST00000511496 HPCAL1P37235 193 aa12.43□□□□□ -0.42
LIMCH1-213ENST00000511496 DYNLL1P63167 89 aaKnown RBP12.43□□□□□ -0.42
LIMCH1-213ENST00000511496 FAAP100Q0VG06 881 aa12.43□□□□□ -0.42
LIMCH1-213ENST00000511496 BHLHE22Q8NFJ8 381 aaPredicted RBP12.43□□□□□ -0.42
LIMCH1-213ENST00000511496 IMPG2Q9BZV3 1241 aa12.43□□□□□ -0.42
LIMCH1-213ENST00000511496 INO80BQ9C086 356 aaPredicted RBP12.43□□□□□ -0.42
LIMCH1-213ENST00000511496 CD209Q9NNX6 404 aa12.43□□□□□ -0.42
LIMCH1-213ENST00000511496 TRAF6Q9Y4K3 522 aa12.43□□□□□ -0.42
LIMCH1-213ENST00000511496 AFG3L2Q9Y4W6 797 aa12.43□□□□□ -0.42
LIMCH1-213ENST00000511496 ANGPTL3Q9Y5C1 460 aa12.43□□□□□ -0.42
LIMCH1-213ENST00000511496 SDR42E2A6NKP2 422 aa12.43□□□□□ -0.42
LIMCH1-213ENST00000511496 DYNC1LI2O43237 492 aaPredicted RBP12.43□□□□□ -0.42
LIMCH1-213ENST00000511496 IDUAP35475 653 aa12.43□□□□□ -0.42
LIMCH1-213ENST00000511496 KNOP1Q1ED39 458 aaKnown RBP12.43□□□□□ -0.42
LIMCH1-213ENST00000511496 PARP10Q53GL7 1025 aa12.43□□□□□ -0.42
LIMCH1-213ENST00000511496 SLC10A5Q5PT55 438 aa12.43□□□□□ -0.42
LIMCH1-213ENST00000511496 CES4AQ5XG92 561 aa12.43□□□□□ -0.42
LIMCH1-213ENST00000511496 ACDQ96AP0 544 aa12.43□□□□□ -0.42
LIMCH1-213ENST00000511496 APOPT1Q96IL0 206 aa12.43□□□□□ -0.42
LIMCH1-213ENST00000511496 IRF2BPLQ9H1B7 796 aa12.43□□□□□ -0.42
LIMCH1-213ENST00000511496 UBE2TQ9NPD8 197 aaPredicted RBP12.43□□□□□ -0.42
LIMCH1-213ENST00000511496 SH3GLB2Q9NR46 395 aa12.43□□□□□ -0.42
LIMCH1-213ENST00000511496 THAP1Q9NVV9 213 aa12.43□□□□□ -0.42
LIMCH1-213ENST00000511496 SLC8A2Q9UPR5 921 aa12.43□□□□□ -0.42
LIMCH1-213ENST00000511496 DENND3A2RUS2 1198 aa12.42□□□□□ -0.42
LIMCH1-213ENST00000511496 KLHL2O95198 593 aa12.42□□□□□ -0.42
LIMCH1-213ENST00000511496 CAPN1P07384 714 aa12.42□□□□□ -0.42
LIMCH1-213ENST00000511496 IL4RP24394 825 aa12.42□□□□□ -0.42
LIMCH1-213ENST00000511496 KCNA1Q09470 495 aa12.42□□□□□ -0.42
LIMCH1-213ENST00000511496 ADGRD1Q6QNK2 874 aa12.42□□□□□ -0.42
LIMCH1-213ENST00000511496 ADGRA1Q86SQ6 560 aa12.42□□□□□ -0.42
LIMCH1-213ENST00000511496 AKAP14Q86UN6 197 aa12.42□□□□□ -0.42
LIMCH1-213ENST00000511496 BRSK1Q8TDC3 778 aa12.42□□□□□ -0.42
LIMCH1-213ENST00000511496 ADAMTS16Q8TE57 1224 aa12.42□□□□□ -0.42
LIMCH1-213ENST00000511496 TFB1MQ8WVM0 346 aaKnown RBP12.42□□□□□ -0.42
LIMCH1-213ENST00000511496 MTG1Q9BT17 334 aaPredicted RBP12.42□□□□□ -0.42
LIMCH1-213ENST00000511496 SYT11Q9BT88 431 aa12.42□□□□□ -0.42
LIMCH1-213ENST00000511496 HOXD1Q9GZZ0 328 aa12.42□□□□□ -0.42
LIMCH1-213ENST00000511496 SLC52A2Q9HAB3 445 aa12.42□□□□□ -0.42
LIMCH1-213ENST00000511496 GTF3C4Q9UKN8 822 aa12.42□□□□□ -0.42
LIMCH1-213ENST00000511496 MAGEB6P1A0A0J9YX57 407 aa12.42□□□□□ -0.42
LIMCH1-213ENST00000511496 DNALI1O14645 258 aaPredicted RBP12.42□□□□□ -0.42
LIMCH1-213ENST00000511496 DCXO43602 365 aa12.42□□□□□ -0.42
LIMCH1-213ENST00000511496 LYPLA1O75608 230 aaPredicted RBP12.42□□□□□ -0.42
LIMCH1-213ENST00000511496 UFL1O94874 794 aa12.42□□□□□ -0.42
LIMCH1-213ENST00000511496 BMP10O95393 424 aa12.42□□□□□ -0.42
LIMCH1-213ENST00000511496 PLA2G4BP0C869 781 aa12.42□□□□□ -0.42
LIMCH1-213ENST00000511496 DHRS4L1P0CG22 281 aa12.42□□□□□ -0.42
LIMCH1-213ENST00000511496 XRCC1P18887 633 aaPredicted RBP12.42□□□□□ -0.42
LIMCH1-213ENST00000511496 STX3Q13277 289 aa12.42□□□□□ -0.42
LIMCH1-213ENST00000511496 RAB39AQ14964 217 aa12.42□□□□□ -0.42
LIMCH1-213ENST00000511496 BBS9Q3SYG4 887 aa12.42□□□□□ -0.42
LIMCH1-213ENST00000511496 CHST15Q7LFX5 561 aaPredicted RBP12.42□□□□□ -0.42
LIMCH1-213ENST00000511496 TICAM1Q8IUC6 712 aa12.42□□□□□ -0.42
LIMCH1-213ENST00000511496 CDHR1Q96JP9 859 aa12.42□□□□□ -0.42
LIMCH1-213ENST00000511496 CDK5RAP1Q96SZ6 601 aaKnown RBP12.42□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 21.3 ms