RNA–Protein interactions for RNA: ENST00000495090.6

SYNE1-230, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best) BASIC

Gene SYNE1, Length 1,907 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-230ENST00000495090 TEDDM1Q5T9Z0 273 aa10.02□□□□□ -0.81
SYNE1-230ENST00000495090 TAS1R3Q7RTX0 852 aa10.02□□□□□ -0.81
SYNE1-230ENST00000495090 ZNF554Q86TJ5 538 aa10.02□□□□□ -0.81
SYNE1-230ENST00000495090 CROCCP3Q8IVE0 287 aa10.02□□□□□ -0.81
SYNE1-230ENST00000495090 MCUQ8NE86 351 aa10.02□□□□□ -0.81
SYNE1-230ENST00000495090 ZFP28Q8NHY6 868 aa10.02□□□□□ -0.81
SYNE1-230ENST00000495090 SHKBP1Q8TBC3 707 aa10.02□□□□□ -0.81
SYNE1-230ENST00000495090 ZNF778Q96MU6 729 aa10.02□□□□□ -0.81
SYNE1-230ENST00000495090 GCNAQ96QF7 691 aa10.02□□□□□ -0.81
SYNE1-230ENST00000495090 RTKNQ9BST9 563 aa10.02□□□□□ -0.81
SYNE1-230ENST00000495090 SLC13A1Q9BZW2 595 aa10.02□□□□□ -0.81
SYNE1-230ENST00000495090 ZNF395Q9H8N7 513 aaPredicted RBP10.02□□□□□ -0.81
SYNE1-230ENST00000495090 RSAD1Q9HA92 442 aa10.02□□□□□ -0.81
SYNE1-230ENST00000495090 CYP26B1Q9NR63 512 aa10.02□□□□□ -0.81
SYNE1-230ENST00000495090 MAP3K20Q9NYL2 800 aaKnown RBP10.02□□□□□ -0.81
SYNE1-230ENST00000495090 BTBD7Q9P203 1132 aa10.02□□□□□ -0.81
SYNE1-230ENST00000495090 ZC3H7BQ9UGR2 993 aaKnown RBP10.02□□□□□ -0.81
SYNE1-230ENST00000495090 BCAP29Q9UHQ4 241 aa10.02□□□□□ -0.81
SYNE1-230ENST00000495090 ARHGAP26Q9UNA1 814 aa10.02□□□□□ -0.81
SYNE1-230ENST00000495090 NUB1Q9Y5A7 615 aa10.02□□□□□ -0.81
SYNE1-230ENST00000495090 ARID2Q68CP9 1835 aa10.02□□□□□ -0.81
SYNE1-230ENST00000495090 LY75O60449 1722 aa10.02□□□□□ -0.81
SYNE1-230ENST00000495090 TMEM150BA6NC51 233 aa10.01□□□□□ -0.81
SYNE1-230ENST00000495090 CAPN8A6NHC0 703 aa10.01□□□□□ -0.81
SYNE1-230ENST00000495090 CXorf49A8MYA2 514 aaPredicted RBP10.01□□□□□ -0.81
SYNE1-230ENST00000495090 DKC1O60832 514 aaKnown RBP eCLIP10.01□□□□□ -0.81
SYNE1-230ENST00000495090 PDE5AO76074 875 aa10.01□□□□□ -0.81
SYNE1-230ENST00000495090 LDHAP00338 332 aaKnown RBP10.01□□□□□ -0.81
SYNE1-230ENST00000495090 GSRP00390 522 aa10.01□□□□□ -0.81
SYNE1-230ENST00000495090 SERPINE1P05121 402 aa10.01□□□□□ -0.81
SYNE1-230ENST00000495090 OSBPP22059 807 aa10.01□□□□□ -0.81
SYNE1-230ENST00000495090 IL1R2P27930 398 aa10.01□□□□□ -0.81
SYNE1-230ENST00000495090 LIG4P49917 911 aa10.01□□□□□ -0.81
SYNE1-230ENST00000495090 AP3M2P53677 418 aa10.01□□□□□ -0.81
SYNE1-230ENST00000495090 MYLK3Q32MK0 819 aa10.01□□□□□ -0.81
SYNE1-230ENST00000495090 FASTKD1Q53R41 847 aaKnown RBP10.01□□□□□ -0.81
SYNE1-230ENST00000495090 FSCBQ5H9T9 825 aa10.01□□□□□ -0.81
SYNE1-230ENST00000495090 OLFML2BQ68BL8 750 aa10.01□□□□□ -0.81
SYNE1-230ENST00000495090 SLFN12LQ6IEE8 588 aa10.01□□□□□ -0.81
SYNE1-230ENST00000495090 C4orf22Q6V702 233 aa10.01□□□□□ -0.81
SYNE1-230ENST00000495090 DENND5BQ6ZUT9 1274 aa10.01□□□□□ -0.81
SYNE1-230ENST00000495090 ZNF410Q86VK4 478 aa10.01□□□□□ -0.81
SYNE1-230ENST00000495090 DEFB107AQ8IZN7 70 aa10.01□□□□□ -0.81
SYNE1-230ENST00000495090 NDUFAF2Q8N183 169 aa10.01□□□□□ -0.81
SYNE1-230ENST00000495090 ARFGAP1Q8N6T3 406 aa10.01□□□□□ -0.81
SYNE1-230ENST00000495090 SPATA18Q8TC71 538 aa10.01□□□□□ -0.81
SYNE1-230ENST00000495090 FAF2Q96CS3 445 aa10.01□□□□□ -0.81
SYNE1-230ENST00000495090 CFAP36Q96G28 342 aa10.01□□□□□ -0.81
SYNE1-230ENST00000495090 CLMNQ96JQ2 1002 aa10.01□□□□□ -0.81
SYNE1-230ENST00000495090 C10orf88Q9H8K7 445 aa10.01□□□□□ -0.81
SYNE1-230ENST00000495090 PLAC1Q9HBJ0 212 aa10.01□□□□□ -0.81
SYNE1-230ENST00000495090 PDLIM7Q9NR12 457 aa10.01□□□□□ -0.81
SYNE1-230ENST00000495090 UBAP1Q9NZ09 502 aa10.01□□□□□ -0.81
SYNE1-230ENST00000495090 PKD2L1Q9P0L9 805 aa10.01□□□□□ -0.81
SYNE1-230ENST00000495090 STK39Q9UEW8 545 aa10.01□□□□□ -0.81
SYNE1-230ENST00000495090 HERC5Q9UII4 1024 aaKnown RBP10.01□□□□□ -0.81
SYNE1-230ENST00000495090 VPS28Q9UK41 221 aa10.01□□□□□ -0.81
SYNE1-230ENST00000495090 FEM1BQ9UK73 627 aa10.01□□□□□ -0.81
SYNE1-230ENST00000495090 CNOT11Q9UKZ1 510 aaKnown RBP10.01□□□□□ -0.81
SYNE1-230ENST00000495090 ZBTB21Q9ULJ3 1066 aa10.01□□□□□ -0.81
SYNE1-230ENST00000495090 DNAJC16Q9Y2G8 782 aa10.01□□□□□ -0.81
SYNE1-230ENST00000495090 SCN4AP35499 1836 aa10.01□□□□□ -0.81
SYNE1-230ENST00000495090 PTPRJQ12913 1337 aa10.01□□□□□ -0.81
SYNE1-230ENST00000495090 GLRA3O75311 464 aa10.01□□□□□ -0.81
SYNE1-230ENST00000495090 TRMUO75648 421 aaKnown RBP10.01□□□□□ -0.81
SYNE1-230ENST00000495090 DGAT1O75907 488 aa10.01□□□□□ -0.81
SYNE1-230ENST00000495090 ENDOD1O94919 500 aa10.01□□□□□ -0.81
SYNE1-230ENST00000495090 FBXO21O94952 628 aa10.01□□□□□ -0.81
SYNE1-230ENST00000495090 CRTAMO95727 393 aa10.01□□□□□ -0.81
SYNE1-230ENST00000495090 FGF3P11487 239 aaPredicted RBP10.01□□□□□ -0.81
SYNE1-230ENST00000495090 MAGEA3P43357 314 aa10.01□□□□□ -0.81
SYNE1-230ENST00000495090 SLC1A6P48664 564 aa10.01□□□□□ -0.81
SYNE1-230ENST00000495090 IDH3AP50213 366 aa10.01□□□□□ -0.81
SYNE1-230ENST00000495090 CACNB3P54284 484 aa10.01□□□□□ -0.81
SYNE1-230ENST00000495090 HDAC4P56524 1084 aa10.01□□□□□ -0.81
SYNE1-230ENST00000495090 MRPS9P82933 396 aaKnown RBP10.01□□□□□ -0.81
SYNE1-230ENST00000495090 ADGRE1Q14246 886 aa10.01□□□□□ -0.81
SYNE1-230ENST00000495090 FAM47CQ5HY64 1035 aa10.01□□□□□ -0.81
SYNE1-230ENST00000495090 METTL21CQ5VZV1 264 aa10.01□□□□□ -0.81
SYNE1-230ENST00000495090 LMBRD2Q68DH5 695 aaPredicted RBP10.01□□□□□ -0.81
SYNE1-230ENST00000495090 PDPK2PQ6A1A2 396 aa10.01□□□□□ -0.81
SYNE1-230ENST00000495090 DHRS4L2Q6PKH6 230 aa10.01□□□□□ -0.81
SYNE1-230ENST00000495090 MCF2L2Q86YR7 1114 aa10.01□□□□□ -0.81
SYNE1-230ENST00000495090 HPS6Q86YV9 775 aa10.01□□□□□ -0.81
SYNE1-230ENST00000495090 RFX6Q8HWS3 928 aa10.01□□□□□ -0.81
SYNE1-230ENST00000495090 ERI1Q8IV48 349 aaKnown RBP10.01□□□□□ -0.81
SYNE1-230ENST00000495090 ADGRF2Q8IZF7 708 aa10.01□□□□□ -0.81
SYNE1-230ENST00000495090 IL31RAQ8NI17 732 aa10.01□□□□□ -0.81
SYNE1-230ENST00000495090 PPP1R14CQ8TAE6 165 aa10.01□□□□□ -0.81
SYNE1-230ENST00000495090 GSDMBQ8TAX9 411 aa10.01□□□□□ -0.81
SYNE1-230ENST00000495090 TRPC4APQ8TEL6 797 aa10.01□□□□□ -0.81
SYNE1-230ENST00000495090 PPP4R1Q8TF05 950 aa10.01□□□□□ -0.81
SYNE1-230ENST00000495090 DNAJC1Q96KC8 554 aaKnown RBP10.01□□□□□ -0.81
SYNE1-230ENST00000495090 BIRC8Q96P09 236 aa10.01□□□□□ -0.81
SYNE1-230ENST00000495090 SERPINI1Q99574 410 aa10.01□□□□□ -0.81
SYNE1-230ENST00000495090 SH2D3AQ9BRG2 576 aa10.01□□□□□ -0.81
SYNE1-230ENST00000495090 APOL6Q9BWW8 343 aa10.01□□□□□ -0.81
SYNE1-230ENST00000495090 IMPG2Q9BZV3 1241 aa10.01□□□□□ -0.81
SYNE1-230ENST00000495090 SMYD2Q9NRG4 433 aa10.01□□□□□ -0.81
SYNE1-230ENST00000495090 COL20A1Q9P218 1284 aa10.01□□□□□ -0.81
Retrieved 100 of 20,778 RNA–protein pairs in 44.1 ms