RNA–Protein interactions for RNA: ENST00000494566.5

CCDC88B-210, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 2,909 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-210ENST00000494566 PLXNA1Q9UIW2 1896 aa17.17■□□□□ 0.34
CCDC88B-210ENST00000494566 KCNN4O15554 427 aa17.17■□□□□ 0.34
CCDC88B-210ENST00000494566 SLC8A3P57103 927 aa17.17■□□□□ 0.34
CCDC88B-210ENST00000494566 FAM187BQ17R55 369 aa17.17■□□□□ 0.34
CCDC88B-210ENST00000494566 KBTBD12Q3ZCT8 623 aa17.17■□□□□ 0.34
CCDC88B-210ENST00000494566 ZNF618Q5T7W0 954 aa17.17■□□□□ 0.34
CCDC88B-210ENST00000494566 RNF220Q5VTB9 566 aa17.17■□□□□ 0.34
CCDC88B-210ENST00000494566 EFCAB3Q8N7B9 438 aa17.17■□□□□ 0.34
CCDC88B-210ENST00000494566 MAB21L3Q8N8X9 362 aa17.17■□□□□ 0.34
CCDC88B-210ENST00000494566 SYT15Q9BQS2 421 aa17.17■□□□□ 0.34
CCDC88B-210ENST00000494566 CNPY3Q9BT09 278 aa17.17■□□□□ 0.34
CCDC88B-210ENST00000494566 NFKBIZQ9BYH8 718 aa17.17■□□□□ 0.34
CCDC88B-210ENST00000494566 MANSC1Q9H8J5 431 aa17.17■□□□□ 0.34
CCDC88B-210ENST00000494566 RAB6BQ9NRW1 208 aa17.17■□□□□ 0.34
CCDC88B-210ENST00000494566 MEI4A8MW99 385 aa17.17■□□□□ 0.34
CCDC88B-210ENST00000494566 DCTN3O75935 186 aa17.17■□□□□ 0.34
CCDC88B-210ENST00000494566 MT-ND3P03897 115 aa17.17■□□□□ 0.34
CCDC88B-210ENST00000494566 CCDC130P13994 396 aa17.17■□□□□ 0.34
CCDC88B-210ENST00000494566 RBL1P28749 1068 aa17.17■□□□□ 0.34
CCDC88B-210ENST00000494566 ADORA2BP29275 332 aa17.17■□□□□ 0.34
CCDC88B-210ENST00000494566 MXRA7P84157 204 aa17.17■□□□□ 0.34
CCDC88B-210ENST00000494566 SNAPC2Q13487 334 aa17.17■□□□□ 0.34
CCDC88B-210ENST00000494566 CDHR3Q6ZTQ4 885 aa17.17■□□□□ 0.34
CCDC88B-210ENST00000494566 RIBC1Q8N443 379 aaPredicted RBP17.17■□□□□ 0.34
CCDC88B-210ENST00000494566 ATP11CQ8NB49 1132 aa17.17■□□□□ 0.34
CCDC88B-210ENST00000494566 OR6B3Q8NGW1 331 aa17.17■□□□□ 0.34
CCDC88B-210ENST00000494566 NDRG1Q92597 394 aaKnown RBP17.17■□□□□ 0.34
CCDC88B-210ENST00000494566 TSSK1BQ9BXA7 367 aa17.17■□□□□ 0.34
CCDC88B-210ENST00000494566 NXF3Q9H4D5 531 aaKnown RBP17.17■□□□□ 0.34
CCDC88B-210ENST00000494566 GOLGA2P5Q9HBQ8 144 aa17.17■□□□□ 0.34
CCDC88B-210ENST00000494566 KBTBD13C9JR72 458 aa17.16■□□□□ 0.34
CCDC88B-210ENST00000494566 CAPN9O14815 690 aa17.16■□□□□ 0.34
CCDC88B-210ENST00000494566 MAGEB2O15479 319 aa17.16■□□□□ 0.34
CCDC88B-210ENST00000494566 HAUS5O94927 633 aa17.16■□□□□ 0.34
CCDC88B-210ENST00000494566 UBTFL6P0CB48 400 aaPredicted RBP17.16■□□□□ 0.34
CCDC88B-210ENST00000494566 MYL2P10916 166 aa17.16■□□□□ 0.34
CCDC88B-210ENST00000494566 IL4RP24394 825 aa17.16■□□□□ 0.34
CCDC88B-210ENST00000494566 ATICP31939 592 aa17.16■□□□□ 0.34
CCDC88B-210ENST00000494566 EFHC2Q5JST6 749 aa17.16■□□□□ 0.34
CCDC88B-210ENST00000494566 LCLAT1Q6UWP7 414 aa17.16■□□□□ 0.34
CCDC88B-210ENST00000494566 DPP9Q86TI2 863 aa17.16■□□□□ 0.34
CCDC88B-210ENST00000494566 PDIK1LQ8N165 341 aa17.16■□□□□ 0.34
CCDC88B-210ENST00000494566 HIPK4Q8NE63 616 aa17.16■□□□□ 0.34
CCDC88B-210ENST00000494566 FAF2Q96CS3 445 aa17.16■□□□□ 0.34
CCDC88B-210ENST00000494566 RSAD1Q9HA92 442 aa17.16■□□□□ 0.34
CCDC88B-210ENST00000494566 CYP3A43Q9HB55 503 aa17.16■□□□□ 0.34
CCDC88B-210ENST00000494566 SLC17A6Q9P2U8 582 aa17.16■□□□□ 0.34
CCDC88B-210ENST00000494566 ACTL7BQ9Y614 415 aa17.16■□□□□ 0.34
CCDC88B-210ENST00000494566 IKBKGQ9Y6K9 419 aa17.16■□□□□ 0.34
CCDC88B-210ENST00000494566 BAG2O95816 211 aa17.16■□□□□ 0.34
CCDC88B-210ENST00000494566 GNAZP19086 355 aa17.16■□□□□ 0.34
CCDC88B-210ENST00000494566 ARFIP2P53365 341 aa17.16■□□□□ 0.34
CCDC88B-210ENST00000494566 PTK7Q13308 1070 aa17.16■□□□□ 0.34
CCDC88B-210ENST00000494566 NOMO1Q15155 1222 aa17.16■□□□□ 0.34
CCDC88B-210ENST00000494566 ACSBG2Q5FVE4 666 aa17.16■□□□□ 0.34
CCDC88B-210ENST00000494566 NRG4Q8WWG1 115 aa17.16■□□□□ 0.34
CCDC88B-210ENST00000494566 GBA2Q9HCG7 927 aaPredicted RBP17.16■□□□□ 0.34
CCDC88B-210ENST00000494566 NMRK1Q9NWW6 199 aa17.16■□□□□ 0.34
CCDC88B-210ENST00000494566 ITGA11Q9UKX5 1188 aa17.16■□□□□ 0.34
CCDC88B-210ENST00000494566 H3BRJ5 948 aa17.15■□□□□ 0.34
CCDC88B-210ENST00000494566 PAPSS1O43252 624 aaPredicted RBP17.15■□□□□ 0.34
CCDC88B-210ENST00000494566 USP1O94782 785 aa17.15■□□□□ 0.34
CCDC88B-210ENST00000494566 TROVE2P10155 538 aaKnown RBP eCLIP17.15■□□□□ 0.34
CCDC88B-210ENST00000494566 AMPD1P23109 780 aa17.15■□□□□ 0.34
CCDC88B-210ENST00000494566 HOXA11P31270 313 aaPredicted RBP17.15■□□□□ 0.34
CCDC88B-210ENST00000494566 INCA1Q0VD86 236 aa17.15■□□□□ 0.34
CCDC88B-210ENST00000494566 THOC5Q13769 683 aaKnown RBP17.15■□□□□ 0.34
CCDC88B-210ENST00000494566 PCGF5Q86SE9 256 aa17.15■□□□□ 0.34
CCDC88B-210ENST00000494566 TDRPQ86YL5 185 aa17.15■□□□□ 0.34
CCDC88B-210ENST00000494566 CCDC110Q8TBZ0 833 aa17.15■□□□□ 0.34
CCDC88B-210ENST00000494566 DNAJC9Q8WXX5 260 aa17.15■□□□□ 0.34
CCDC88B-210ENST00000494566 GRAMD1AQ96CP6 724 aa17.15■□□□□ 0.34
CCDC88B-210ENST00000494566 PGLYRP2Q96PD5 576 aa17.15■□□□□ 0.34
CCDC88B-210ENST00000494566 SNRNP25Q9BV90 132 aaKnown RBP17.15■□□□□ 0.34
CCDC88B-210ENST00000494566 ZFATQ9P243 1243 aa17.15■□□□□ 0.34
CCDC88B-210ENST00000494566 MFHAS1Q9Y4C4 1052 aa17.15■□□□□ 0.34
CCDC88B-210ENST00000494566 BTBD19C9JJ37 291 aa17.15■□□□□ 0.34
CCDC88B-210ENST00000494566 LCP1P13796 627 aa17.15■□□□□ 0.34
CCDC88B-210ENST00000494566 OLFML1Q6UWY5 402 aa17.15■□□□□ 0.34
CCDC88B-210ENST00000494566 CEP128Q6ZU80 1094 aa17.15■□□□□ 0.34
CCDC88B-210ENST00000494566 CATSPER4Q7RTX7 472 aa17.15■□□□□ 0.34
CCDC88B-210ENST00000494566 PQLC3Q8N755 202 aa17.15■□□□□ 0.34
CCDC88B-210ENST00000494566 PLD5Q8N7P1 536 aa17.15■□□□□ 0.34
CCDC88B-210ENST00000494566 PDCD7Q8N8D1 485 aaKnown RBP17.15■□□□□ 0.34
CCDC88B-210ENST00000494566 PCDH19Q8TAB3 1148 aa17.15■□□□□ 0.34
CCDC88B-210ENST00000494566 KHSRPQ92945 711 aaKnown RBP eCLIP17.15■□□□□ 0.34
CCDC88B-210ENST00000494566 FAM161BQ96MY7 647 aa17.15■□□□□ 0.34
CCDC88B-210ENST00000494566 RNF157Q96PX1 679 aa17.15■□□□□ 0.34
CCDC88B-210ENST00000494566 KATNBL1Q9H079 304 aa17.15■□□□□ 0.34
CCDC88B-210ENST00000494566 EFR3BQ9Y2G0 817 aa17.15■□□□□ 0.34
CCDC88B-210ENST00000494566 ZCCHC18P0CG32 403 aa17.14■□□□□ 0.33
CCDC88B-210ENST00000494566 LMO2P25791 158 aa17.14■□□□□ 0.33
CCDC88B-210ENST00000494566 PHC3Q8NDX5 983 aa17.14■□□□□ 0.33
CCDC88B-210ENST00000494566 OR6J1Q8NGC5 347 aa17.14■□□□□ 0.33
CCDC88B-210ENST00000494566 DCAKDQ8WVC6 231 aa17.14■□□□□ 0.33
CCDC88B-210ENST00000494566 NMUR2Q9GZQ4 415 aa17.14■□□□□ 0.33
CCDC88B-210ENST00000494566 VRTNQ9H8Y1 702 aa17.14■□□□□ 0.33
CCDC88B-210ENST00000494566 MAGED2Q9UNF1 606 aaPredicted RBP17.14■□□□□ 0.33
CCDC88B-210ENST00000494566 PRPF4O43172 522 aaKnown RBP eCLIP17.14■□□□□ 0.33
CCDC88B-210ENST00000494566 SMIM24O75264 130 aa17.14■□□□□ 0.33
Retrieved 100 of 20,778 RNA–protein pairs in 20.4 ms