RNA–Protein interactions for RNA: ENST00000493674.5

VPS52-220, Transcript of VPS52, GARP complex subunit, humanhuman

TSL 2

Gene VPS52, Length 878 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS52-220ENST00000493674 A0A1W2PQH9 124 aa13.2□□□□□ -0.3
VPS52-220ENST00000493674 C3orf70A6NLC5 250 aaPredicted RBP13.2□□□□□ -0.3
VPS52-220ENST00000493674 PGRMC1O00264 195 aaKnown RBP13.2□□□□□ -0.3
VPS52-220ENST00000493674 MDM4O15151 490 aa13.2□□□□□ -0.3
VPS52-220ENST00000493674 TGM5O43548 720 aa13.2□□□□□ -0.3
VPS52-220ENST00000493674 CEP104O60308 925 aa13.2□□□□□ -0.3
VPS52-220ENST00000493674 TADA3O75528 432 aa13.2□□□□□ -0.3
VPS52-220ENST00000493674 SLU7O95391 586 aaKnown RBP13.2□□□□□ -0.3
VPS52-220ENST00000493674 CSH1P0DML2 217 aa13.2□□□□□ -0.3
VPS52-220ENST00000493674 CSH2P0DML3 217 aa13.2□□□□□ -0.3
VPS52-220ENST00000493674 MTMR3Q13615 1198 aa13.2□□□□□ -0.3
VPS52-220ENST00000493674 HADHQ16836 314 aaKnown RBP13.2□□□□□ -0.3
VPS52-220ENST00000493674 CDO1Q16878 200 aa13.2□□□□□ -0.3
VPS52-220ENST00000493674 ATP13A4Q4VNC1 1196 aa13.2□□□□□ -0.3
VPS52-220ENST00000493674 RTL10Q7L3V2 364 aa13.2□□□□□ -0.3
VPS52-220ENST00000493674 VSIG1Q86XK7 387 aa13.2□□□□□ -0.3
VPS52-220ENST00000493674 GPR152Q8TDT2 470 aa13.2□□□□□ -0.3
VPS52-220ENST00000493674 DQX1Q8TE96 717 aaKnown RBP13.2□□□□□ -0.3
VPS52-220ENST00000493674 NTAN1Q96AB6 310 aa13.2□□□□□ -0.3
VPS52-220ENST00000493674 TIFAQ96CG3 184 aa13.2□□□□□ -0.3
VPS52-220ENST00000493674 RPGRIP1Q96KN7 1286 aa13.2□□□□□ -0.3
VPS52-220ENST00000493674 SLITRK1Q96PX8 696 aa13.2□□□□□ -0.3
VPS52-220ENST00000493674 EMILIN2Q9BXX0 1053 aa13.2□□□□□ -0.3
VPS52-220ENST00000493674 CYP4F11Q9HBI6 524 aa13.2□□□□□ -0.3
VPS52-220ENST00000493674 SMARCAL1Q9NZC9 954 aa13.2□□□□□ -0.3
VPS52-220ENST00000493674 GMIPQ9P107 970 aa13.2□□□□□ -0.3
VPS52-220ENST00000493674 DOCK8Q8NF50 2099 aa13.2□□□□□ -0.3
VPS52-220ENST00000493674 ZNF487B1APH4 448 aa13.19□□□□□ -0.3
VPS52-220ENST00000493674 RARAP10276 462 aa13.19□□□□□ -0.3
VPS52-220ENST00000493674 NCAM1P13591 858 aa13.19□□□□□ -0.3
VPS52-220ENST00000493674 DESP17661 470 aa13.19□□□□□ -0.3
VPS52-220ENST00000493674 RDXP35241 583 aaKnown RBP13.19□□□□□ -0.3
VPS52-220ENST00000493674 IRS1P35568 1242 aa13.19□□□□□ -0.3
VPS52-220ENST00000493674 CXCR3P49682 368 aa13.19□□□□□ -0.3
VPS52-220ENST00000493674 CLCN4P51793 760 aa13.19□□□□□ -0.3
VPS52-220ENST00000493674 ATXN1P54253 815 aaKnown RBP13.19□□□□□ -0.3
VPS52-220ENST00000493674 COPS2P61201 443 aa13.19□□□□□ -0.3
VPS52-220ENST00000493674 SCAPQ12770 1279 aa13.19□□□□□ -0.3
VPS52-220ENST00000493674 TAF10Q12962 218 aa13.19□□□□□ -0.3
VPS52-220ENST00000493674 KLF1Q13351 362 aaPredicted RBP13.19□□□□□ -0.3
VPS52-220ENST00000493674 PLD1Q13393 1074 aa13.19□□□□□ -0.3
VPS52-220ENST00000493674 ZNF211Q13398 564 aaPredicted RBP13.19□□□□□ -0.3
VPS52-220ENST00000493674 GPM6BQ13491 265 aa13.19□□□□□ -0.3
VPS52-220ENST00000493674 SIX1Q15475 284 aaPredicted RBP13.19□□□□□ -0.3
VPS52-220ENST00000493674 CLUL1Q15846 466 aa13.19□□□□□ -0.3
VPS52-220ENST00000493674 PPP2R5EQ16537 467 aa13.19□□□□□ -0.3
VPS52-220ENST00000493674 BOLA3Q53S33 107 aa13.19□□□□□ -0.3
VPS52-220ENST00000493674 SEL1L2Q5TEA6 688 aa13.19□□□□□ -0.3
VPS52-220ENST00000493674 PLPP4Q5VZY2 271 aa13.19□□□□□ -0.3
VPS52-220ENST00000493674 AADACL2Q6P093 401 aa13.19□□□□□ -0.3
VPS52-220ENST00000493674 ANKS1BQ7Z6G8 1248 aa13.19□□□□□ -0.3
VPS52-220ENST00000493674 TAC4Q86UU9 113 aa13.19□□□□□ -0.3
VPS52-220ENST00000493674 SLC13A5Q86YT5 568 aaPredicted RBP13.19□□□□□ -0.3
VPS52-220ENST00000493674 PSTKQ8IV42 348 aaKnown RBP13.19□□□□□ -0.3
VPS52-220ENST00000493674 RCOR2Q8IZ40 523 aa13.19□□□□□ -0.3
VPS52-220ENST00000493674 MNS1Q8NEH6 495 aa13.19□□□□□ -0.3
VPS52-220ENST00000493674 MYRIPQ8NFW9 859 aa13.19□□□□□ -0.3
VPS52-220ENST00000493674 GIPC2Q8TF65 315 aa13.19□□□□□ -0.3
VPS52-220ENST00000493674 RAPGEF5Q92565 580 aa13.19□□□□□ -0.3
VPS52-220ENST00000493674 EDEM1Q92611 657 aa13.19□□□□□ -0.3
VPS52-220ENST00000493674 GOLGA1Q92805 767 aa13.19□□□□□ -0.3
VPS52-220ENST00000493674 FBXO32Q969P5 355 aa13.19□□□□□ -0.3
VPS52-220ENST00000493674 RBM41Q96IZ5 413 aaKnown RBP13.19□□□□□ -0.3
VPS52-220ENST00000493674 HERPUD2Q9BSE4 406 aa13.19□□□□□ -0.3
VPS52-220ENST00000493674 LMAN2LQ9H0V9 348 aa13.19□□□□□ -0.3
VPS52-220ENST00000493674 NKX2-4Q9H2Z4 354 aa13.19□□□□□ -0.3
VPS52-220ENST00000493674 PIGVQ9NUD9 493 aa13.19□□□□□ -0.3
VPS52-220ENST00000493674 MTPAPQ9NVV4 582 aaKnown RBP eCLIP13.19□□□□□ -0.3
VPS52-220ENST00000493674 TMEM51Q9NW97 253 aa13.19□□□□□ -0.3
VPS52-220ENST00000493674 M0QYT0 321 aa13.18□□□□□ -0.3
VPS52-220ENST00000493674 PRRG1O14668 218 aa13.18□□□□□ -0.3
VPS52-220ENST00000493674 CAPN9O14815 690 aa13.18□□□□□ -0.3
VPS52-220ENST00000493674 IRAK2O43187 625 aa13.18□□□□□ -0.3
VPS52-220ENST00000493674 PRPSAP2O60256 369 aa13.18□□□□□ -0.3
VPS52-220ENST00000493674 ZRANB2O95218 330 aaKnown RBP eCLIP13.18□□□□□ -0.3
VPS52-220ENST00000493674 PAPLNO95428 1278 aa13.18□□□□□ -0.3
VPS52-220ENST00000493674 GLUD1P00367 558 aa13.18□□□□□ -0.3
VPS52-220ENST00000493674 KRT1P04264 644 aa13.18□□□□□ -0.3
VPS52-220ENST00000493674 GTF2F1P35269 517 aaKnown RBP eCLIP13.18□□□□□ -0.3
VPS52-220ENST00000493674 CDKN2BP42772 138 aa13.18□□□□□ -0.3
VPS52-220ENST00000493674 ALDH1A3P47895 512 aa13.18□□□□□ -0.3
VPS52-220ENST00000493674 TERF1P54274 439 aa13.18□□□□□ -0.3
VPS52-220ENST00000493674 AIF1P55008 147 aa13.18□□□□□ -0.3
VPS52-220ENST00000493674 TWF1Q12792 350 aa13.18□□□□□ -0.3
VPS52-220ENST00000493674 IFRD2Q12894 506 aaPredicted RBP13.18□□□□□ -0.3
VPS52-220ENST00000493674 NNTQ13423 1086 aa13.18□□□□□ -0.3
VPS52-220ENST00000493674 DPYSL2Q16555 572 aa13.18□□□□□ -0.3
VPS52-220ENST00000493674 BTBD8Q5XKL5 378 aa13.18□□□□□ -0.3
VPS52-220ENST00000493674 MFSD7Q6UXD7 560 aa13.18□□□□□ -0.3
VPS52-220ENST00000493674 SPOCD1Q6ZMY3 1216 aa13.18□□□□□ -0.3
VPS52-220ENST00000493674 RSRC2Q7L4I2 434 aaKnown RBP13.18□□□□□ -0.3
VPS52-220ENST00000493674 ZDHHC14Q8IZN3 488 aa13.18□□□□□ -0.3
VPS52-220ENST00000493674 CCDC185Q8N715 623 aa13.18□□□□□ -0.3
VPS52-220ENST00000493674 PDZD8Q8NEN9 1154 aa13.18□□□□□ -0.3
VPS52-220ENST00000493674 SPATA4Q8NEY3 305 aa13.18□□□□□ -0.3
VPS52-220ENST00000493674 SLC22A17Q8WUG5 538 aa13.18□□□□□ -0.3
VPS52-220ENST00000493674 TSC1Q92574 1164 aa13.18□□□□□ -0.3
VPS52-220ENST00000493674 PSMG2Q969U7 264 aa13.18□□□□□ -0.3
VPS52-220ENST00000493674 SNRNP25Q9BV90 132 aaKnown RBP13.18□□□□□ -0.3
VPS52-220ENST00000493674 LRRC3Q9BY71 257 aa13.18□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 29.5 ms