RNA–Protein interactions for RNA: ENST00000493341.1

VPS13A-212, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 2

Gene VPS13A, Length 2,001 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-212ENST00000493341 LIPMQ5VYY2 423 aa5.13□□□□□ -1.59
VPS13A-212ENST00000493341 CNTROBQ8N137 903 aa5.13□□□□□ -1.59
VPS13A-212ENST00000493341 ADSSL1Q8N142 457 aa5.13□□□□□ -1.59
VPS13A-212ENST00000493341 TTC39CQ8N584 583 aa5.13□□□□□ -1.59
VPS13A-212ENST00000493341 SRBD1Q8N5C6 995 aaKnown RBP5.13□□□□□ -1.59
VPS13A-212ENST00000493341 CCDC191Q8NCU4 936 aa5.13□□□□□ -1.59
VPS13A-212ENST00000493341 METTL6Q8TCB7 284 aa5.13□□□□□ -1.59
VPS13A-212ENST00000493341 USP6NLQ92738 828 aa5.13□□□□□ -1.59
VPS13A-212ENST00000493341 NSUN4Q96CB9 384 aaKnown RBP5.13□□□□□ -1.59
VPS13A-212ENST00000493341 LCORQ96JN0 433 aaPredicted RBP5.13□□□□□ -1.59
VPS13A-212ENST00000493341 MPHOSPH8Q99549 860 aa5.13□□□□□ -1.59
VPS13A-212ENST00000493341 HERC2P3Q9BVR0 1158 aa5.13□□□□□ -1.59
VPS13A-212ENST00000493341 MXD3Q9BW11 206 aa5.13□□□□□ -1.59
VPS13A-212ENST00000493341 PHF7Q9BWX1 381 aaPredicted RBP5.13□□□□□ -1.59
VPS13A-212ENST00000493341 ARHGAP39Q9C0H5 1083 aa5.13□□□□□ -1.59
VPS13A-212ENST00000493341 BRF2Q9HAW0 419 aa5.13□□□□□ -1.59
VPS13A-212ENST00000493341 TMLHEQ9NVH6 421 aa5.13□□□□□ -1.59
VPS13A-212ENST00000493341 TAS2R10Q9NYW0 307 aa5.13□□□□□ -1.59
VPS13A-212ENST00000493341 CFDP1Q9UEE9 299 aaPredicted RBP5.13□□□□□ -1.59
VPS13A-212ENST00000493341 SERTAD3Q9UJW9 196 aa5.13□□□□□ -1.59
VPS13A-212ENST00000493341 RAB21Q9UL25 225 aa5.13□□□□□ -1.59
VPS13A-212ENST00000493341 SORCS3Q9UPU3 1222 aa5.13□□□□□ -1.59
VPS13A-212ENST00000493341 ZBTB1Q9Y2K1 713 aa5.13□□□□□ -1.59
VPS13A-212ENST00000493341 AGAP5A6NIR3 686 aa5.13□□□□□ -1.59
VPS13A-212ENST00000493341 PTGES3LE9PB15 166 aa5.13□□□□□ -1.59
VPS13A-212ENST00000493341 F5H697 171 aa5.13□□□□□ -1.59
VPS13A-212ENST00000493341 CBFA2T3O75081 653 aa5.13□□□□□ -1.59
VPS13A-212ENST00000493341 SEMA7AO75326 666 aa5.13□□□□□ -1.59
VPS13A-212ENST00000493341 GJB3O75712 270 aa5.13□□□□□ -1.59
VPS13A-212ENST00000493341 MLYCDO95822 493 aa5.13□□□□□ -1.59
VPS13A-212ENST00000493341 APOA4P06727 396 aa5.13□□□□□ -1.59
VPS13A-212ENST00000493341 HTR7P34969 479 aa5.13□□□□□ -1.59
VPS13A-212ENST00000493341 RGS2P41220 211 aa5.13□□□□□ -1.59
VPS13A-212ENST00000493341 SNX16P57768 344 aa5.13□□□□□ -1.59
VPS13A-212ENST00000493341 RPS3AP61247 264 aaKnown RBP5.13□□□□□ -1.59
VPS13A-212ENST00000493341 ROR1Q01973 937 aa5.13□□□□□ -1.59
VPS13A-212ENST00000493341 CREB5Q02930 508 aa5.13□□□□□ -1.59
VPS13A-212ENST00000493341 BFSP2Q13515 415 aa5.13□□□□□ -1.59
VPS13A-212ENST00000493341 TBCCQ15814 346 aa5.13□□□□□ -1.59
VPS13A-212ENST00000493341 PREPLQ4J6C6 727 aaPredicted RBP5.13□□□□□ -1.59
VPS13A-212ENST00000493341 DRICH1Q6PGQ1 229 aaPredicted RBP5.13□□□□□ -1.59
VPS13A-212ENST00000493341 RPAP2Q8IXW5 612 aaPredicted RBP5.13□□□□□ -1.59
VPS13A-212ENST00000493341 MB21D1Q8N884 522 aa5.13□□□□□ -1.59
VPS13A-212ENST00000493341 NFKBIDQ8NI38 313 aa5.13□□□□□ -1.59
VPS13A-212ENST00000493341 ST8SIA2Q92186 375 aa5.13□□□□□ -1.59
VPS13A-212ENST00000493341 ATP6V1E2Q96A05 226 aa5.13□□□□□ -1.59
VPS13A-212ENST00000493341 BAG1Q99933 345 aaPredicted RBP5.13□□□□□ -1.59
VPS13A-212ENST00000493341 C17orf80Q9BSJ5 609 aa5.13□□□□□ -1.59
VPS13A-212ENST00000493341 PCDHB16Q9NRJ7 776 aa5.13□□□□□ -1.59
VPS13A-212ENST00000493341 HSFX1Q9UBD0 423 aa5.13□□□□□ -1.59
VPS13A-212ENST00000493341 SMG5Q9UPR3 1016 aaKnown RBP5.13□□□□□ -1.59
VPS13A-212ENST00000493341 SNX14Q9Y5W7 946 aa5.13□□□□□ -1.59
VPS13A-212ENST00000493341 CLTBP09497 229 aa5.12□□□□□ -1.59
VPS13A-212ENST00000493341 EPHA3P29320 983 aa5.12□□□□□ -1.59
VPS13A-212ENST00000493341 EPHA8P29322 1005 aaPredicted RBP5.12□□□□□ -1.59
VPS13A-212ENST00000493341 NLRP5P59047 1200 aa5.12□□□□□ -1.59
VPS13A-212ENST00000493341 CALD1Q05682 793 aaKnown RBP5.12□□□□□ -1.59
VPS13A-212ENST00000493341 DCTN1Q14203 1278 aa5.12□□□□□ -1.59
VPS13A-212ENST00000493341 LY6KQ17RY6 165 aa5.12□□□□□ -1.59
VPS13A-212ENST00000493341 TBRG1Q3YBR2 411 aa5.12□□□□□ -1.59
VPS13A-212ENST00000493341 IKBIPQ70UQ0 350 aa5.12□□□□□ -1.59
VPS13A-212ENST00000493341 SYT12Q8IV01 421 aa5.12□□□□□ -1.59
VPS13A-212ENST00000493341 RHOT2Q8IXI1 618 aa5.12□□□□□ -1.59
VPS13A-212ENST00000493341 SYNE4Q8N205 404 aa5.12□□□□□ -1.59
VPS13A-212ENST00000493341 CXorf38Q8TB03 319 aa5.12□□□□□ -1.59
VPS13A-212ENST00000493341 ETNPPLQ8TBG4 499 aa5.12□□□□□ -1.59
VPS13A-212ENST00000493341 TBC1D5Q92609 795 aa5.12□□□□□ -1.59
VPS13A-212ENST00000493341 SIGLEC10Q96LC7 697 aa5.12□□□□□ -1.59
VPS13A-212ENST00000493341 PIGSQ96S52 555 aa5.12□□□□□ -1.59
VPS13A-212ENST00000493341 HAPLN3Q96S86 360 aa5.12□□□□□ -1.59
VPS13A-212ENST00000493341 SIL1Q9H173 461 aa5.12□□□□□ -1.59
VPS13A-212ENST00000493341 CTTNBP2NLQ9P2B4 639 aa5.12□□□□□ -1.59
VPS13A-212ENST00000493341 TRPC5Q9UL62 973 aaPredicted RBP5.12□□□□□ -1.59
VPS13A-212ENST00000493341 RIMKLBQ9ULI2 386 aa5.12□□□□□ -1.59
VPS13A-212ENST00000493341 SUFUQ9UMX1 484 aa5.12□□□□□ -1.59
VPS13A-212ENST00000493341 CLCA2Q9UQC9 943 aa5.12□□□□□ -1.59
VPS13A-212ENST00000493341 TMEM5Q9Y2B1 443 aa5.12□□□□□ -1.59
VPS13A-212ENST00000493341 COL15A1P39059 1388 aa5.11□□□□□ -1.59
VPS13A-212ENST00000493341 A0A1B0GTL3 188 aa5.11□□□□□ -1.59
VPS13A-212ENST00000493341 PMS2P1A4D2B8 440 aa5.11□□□□□ -1.59
VPS13A-212ENST00000493341 C9orf118A6NHY6 69 aa5.11□□□□□ -1.59
VPS13A-212ENST00000493341 CTIFO43310 598 aaKnown RBP5.11□□□□□ -1.59
VPS13A-212ENST00000493341 TULP3O75386 442 aa5.11□□□□□ -1.59
VPS13A-212ENST00000493341 ERN1O75460 977 aaKnown RBP5.11□□□□□ -1.59
VPS13A-212ENST00000493341 TSPAN9O75954 239 aa5.11□□□□□ -1.59
VPS13A-212ENST00000493341 LAMP2P13473 410 aa5.11□□□□□ -1.59
VPS13A-212ENST00000493341 CHN1P15882 459 aa5.11□□□□□ -1.59
VPS13A-212ENST00000493341 ACSL1P33121 698 aa5.11□□□□□ -1.59
VPS13A-212ENST00000493341 HADHAP40939 763 aa5.11□□□□□ -1.59
VPS13A-212ENST00000493341 NDUFV1P49821 464 aa5.11□□□□□ -1.59
VPS13A-212ENST00000493341 FAM3BP58499 235 aaPredicted RBP5.11□□□□□ -1.59
VPS13A-212ENST00000493341 IFI35P80217 286 aaPredicted RBP5.11□□□□□ -1.59
VPS13A-212ENST00000493341 HSD11B2P80365 405 aa5.11□□□□□ -1.59
VPS13A-212ENST00000493341 CHAF1BQ13112 559 aa5.11□□□□□ -1.59
VPS13A-212ENST00000493341 ACVR2BQ13705 512 aa5.11□□□□□ -1.59
VPS13A-212ENST00000493341 TAF11Q15544 211 aa5.11□□□□□ -1.59
VPS13A-212ENST00000493341 CD300EQ496F6 205 aaPredicted RBP5.11□□□□□ -1.59
VPS13A-212ENST00000493341 NRN1LQ496H8 165 aa5.11□□□□□ -1.59
VPS13A-212ENST00000493341 RBM20Q5T481 1227 aaKnown RBP5.11□□□□□ -1.59
VPS13A-212ENST00000493341 TAGAPQ8N103 731 aa5.11□□□□□ -1.59
Retrieved 100 of 20,778 RNA–protein pairs in 150.7 ms