RNA–Protein interactions for RNA: ENST00000490788.1

HMGB1-208, Transcript of high mobility group box 1, humanhuman

TSL 2

Gene HMGB1, Length 425 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-208ENST00000490788 UNC13DQ70J99 1090 aa2.59□□□□□ -1.99
HMGB1-208ENST00000490788 MICU3Q86XE3 530 aa2.59□□□□□ -1.99
HMGB1-208ENST00000490788 CCDC33Q8N5R6 958 aa2.59□□□□□ -1.99
HMGB1-208ENST00000490788 PNLDC1Q8NA58 520 aaKnown RBP2.59□□□□□ -1.99
HMGB1-208ENST00000490788 FAM98AQ8NCA5 519 aaKnown RBP2.59□□□□□ -1.99
HMGB1-208ENST00000490788 CCDC150Q8NCX0 1101 aa2.59□□□□□ -1.99
HMGB1-208ENST00000490788 MAML1Q92585 1016 aa2.59□□□□□ -1.99
HMGB1-208ENST00000490788 TIFAQ96CG3 184 aa2.59□□□□□ -1.99
HMGB1-208ENST00000490788 RSPRY1Q96DX4 576 aa2.59□□□□□ -1.99
HMGB1-208ENST00000490788 IQCDQ96DY2 449 aa2.59□□□□□ -1.99
HMGB1-208ENST00000490788 VPS50Q96JG6 964 aa2.59□□□□□ -1.99
HMGB1-208ENST00000490788 SNX22Q96L94 193 aa2.59□□□□□ -1.99
HMGB1-208ENST00000490788 C8orf48Q96LL4 319 aa2.59□□□□□ -1.99
HMGB1-208ENST00000490788 HS6ST2Q96MM7 605 aa2.59□□□□□ -1.99
HMGB1-208ENST00000490788 APOL5Q9BWW9 433 aa2.59□□□□□ -1.99
HMGB1-208ENST00000490788 FSD1LQ9BXM9 530 aa2.59□□□□□ -1.99
HMGB1-208ENST00000490788 UNKQ9C0B0 810 aaKnown RBP2.59□□□□□ -1.99
HMGB1-208ENST00000490788 CIPCQ9C0C6 399 aa2.59□□□□□ -1.99
HMGB1-208ENST00000490788 DHX36Q9H2U1 1008 aaKnown RBP2.59□□□□□ -1.99
HMGB1-208ENST00000490788 PRDM13Q9H4Q3 707 aa2.59□□□□□ -1.99
HMGB1-208ENST00000490788 NRIP3Q9NQ35 241 aa2.59□□□□□ -1.99
HMGB1-208ENST00000490788 MID2Q9UJV3 735 aa2.59□□□□□ -1.99
HMGB1-208ENST00000490788 KDM5AP29375 1690 aaKnown RBP2.59□□□□□ -2
HMGB1-208ENST00000490788 CARMIL1Q5VZK9 1371 aa2.59□□□□□ -2
HMGB1-208ENST00000490788 FMN1Q68DA7 1419 aa2.59□□□□□ -2
HMGB1-208ENST00000490788 GOLGA3Q08378 1498 aa2.58□□□□□ -2
HMGB1-208ENST00000490788 NLRP1Q9C000 1473 aa2.58□□□□□ -2
HMGB1-208ENST00000490788 PCSK5Q92824 1860 aa2.58□□□□□ -2
HMGB1-208ENST00000490788 LINC01548A6NM66 108 aa2.58□□□□□ -2
HMGB1-208ENST00000490788 M0R3H8 397 aa2.58□□□□□ -2
HMGB1-208ENST00000490788 CD3EAPO15446 510 aaKnown RBP2.58□□□□□ -2
HMGB1-208ENST00000490788 RRP9O43818 475 aaKnown RBP2.58□□□□□ -2
HMGB1-208ENST00000490788 TMPRSS11DO60235 418 aa2.58□□□□□ -2
HMGB1-208ENST00000490788 PMPCBO75439 489 aa2.58□□□□□ -2
HMGB1-208ENST00000490788 C1QL1O75973 258 aa2.58□□□□□ -2
HMGB1-208ENST00000490788 RNF8O76064 485 aa2.58□□□□□ -2
HMGB1-208ENST00000490788 USP1O94782 785 aa2.58□□□□□ -2
HMGB1-208ENST00000490788 IL18RAPO95256 599 aa2.58□□□□□ -2
HMGB1-208ENST00000490788 PDE8BO95263 885 aa2.58□□□□□ -2
HMGB1-208ENST00000490788 VNN1O95497 513 aa2.58□□□□□ -2
HMGB1-208ENST00000490788 MT-ND5P03915 603 aa2.58□□□□□ -2
HMGB1-208ENST00000490788 KRT18P05783 430 aaKnown RBP2.58□□□□□ -2
HMGB1-208ENST00000490788 ANXA2P07355 339 aaKnown RBP2.58□□□□□ -2
HMGB1-208ENST00000490788 IDEP14735 1019 aa2.58□□□□□ -2
HMGB1-208ENST00000490788 CREB1P16220 341 aa2.58□□□□□ -2
HMGB1-208ENST00000490788 CERS1P27544 350 aa2.58□□□□□ -2
HMGB1-208ENST00000490788 ITPKBP27987 946 aa2.58□□□□□ -2
HMGB1-208ENST00000490788 CTGFP29279 349 aa2.58□□□□□ -2
HMGB1-208ENST00000490788 UQCRC1P31930 480 aa2.58□□□□□ -2
HMGB1-208ENST00000490788 GKP32189 559 aa2.58□□□□□ -2
HMGB1-208ENST00000490788 DEKP35659 375 aaKnown RBP2.58□□□□□ -2
HMGB1-208ENST00000490788 ABCG1P45844 678 aa2.58□□□□□ -2
HMGB1-208ENST00000490788 GATMP50440 423 aa2.58□□□□□ -2
HMGB1-208ENST00000490788 TUBA4AP68366 448 aa2.58□□□□□ -2
HMGB1-208ENST00000490788 CYP4F2P78329 520 aa2.58□□□□□ -2
HMGB1-208ENST00000490788 SAFBQ15424 915 aaKnown RBP eCLIP2.58□□□□□ -2
HMGB1-208ENST00000490788 ST3GAL2Q16842 350 aa2.58□□□□□ -2
HMGB1-208ENST00000490788 C4orf46Q504U0 113 aa2.58□□□□□ -2
HMGB1-208ENST00000490788 KSR2Q6VAB6 950 aa2.58□□□□□ -2
HMGB1-208ENST00000490788 KCTD20Q7Z5Y7 419 aa2.58□□□□□ -2
HMGB1-208ENST00000490788 SESTD1Q86VW0 696 aa2.58□□□□□ -2
HMGB1-208ENST00000490788 SFTPA1Q8IWL2 248 aa2.58□□□□□ -2
HMGB1-208ENST00000490788 FSTL5Q8N475 847 aaPredicted RBP2.58□□□□□ -2
HMGB1-208ENST00000490788 TERB1Q8NA31 727 aa2.58□□□□□ -2
HMGB1-208ENST00000490788 SEMA6DQ8NFY4 1073 aa2.58□□□□□ -2
HMGB1-208ENST00000490788 CYP2W1Q8TAV3 490 aa2.58□□□□□ -2
HMGB1-208ENST00000490788 PHKBQ93100 1093 aa2.58□□□□□ -2
HMGB1-208ENST00000490788 VOPP1Q96AW1 172 aa2.58□□□□□ -2
HMGB1-208ENST00000490788 FAM122AQ96E09 287 aa2.58□□□□□ -2
HMGB1-208ENST00000490788 ZBTB45Q96K62 511 aaPredicted RBP2.58□□□□□ -2
HMGB1-208ENST00000490788 MSLNLQ96KJ4 702 aa2.58□□□□□ -2
HMGB1-208ENST00000490788 CCDC17Q96LX7 622 aa2.58□□□□□ -2
HMGB1-208ENST00000490788 FYTTD1Q96QD9 318 aaKnown RBP2.58□□□□□ -2
HMGB1-208ENST00000490788 HIST1H2AAQ96QV6 131 aa2.58□□□□□ -2
HMGB1-208ENST00000490788 BRIP1Q9BX63 1249 aa2.58□□□□□ -2
HMGB1-208ENST00000490788 VN1R3Q9BXE9 311 aa2.58□□□□□ -2
HMGB1-208ENST00000490788 SLC29A3Q9BZD2 475 aa2.58□□□□□ -2
HMGB1-208ENST00000490788 TRIM5Q9C035 493 aa2.58□□□□□ -2
HMGB1-208ENST00000490788 CHST8Q9H2A9 424 aa2.58□□□□□ -2
HMGB1-208ENST00000490788 HEYLQ9NQ87 328 aaPredicted RBP2.58□□□□□ -2
HMGB1-208ENST00000490788 GEMIN8Q9NWZ8 242 aaKnown RBP2.58□□□□□ -2
HMGB1-208ENST00000490788 COL20A1Q9P218 1284 aa2.58□□□□□ -2
HMGB1-208ENST00000490788 DNMT3BQ9UBC3 853 aaKnown RBP2.58□□□□□ -2
HMGB1-208ENST00000490788 MGAT4CQ9UBM8 478 aa2.58□□□□□ -2
HMGB1-208ENST00000490788 NKX1-2Q9UD57 310 aaPredicted RBP2.58□□□□□ -2
HMGB1-208ENST00000490788 STEAP1Q9UHE8 339 aa2.58□□□□□ -2
HMGB1-208ENST00000490788 ADAM21Q9UKJ8 722 aa2.58□□□□□ -2
HMGB1-208ENST00000490788 GABRQQ9UN88 632 aa2.58□□□□□ -2
HMGB1-208ENST00000490788 MIA2Q96PC5 1412 aa2.58□□□□□ -2
HMGB1-208ENST00000490788 NKTRP30414 1462 aaKnown RBP2.58□□□□□ -2
HMGB1-208ENST00000490788 MLH3Q9UHC1 1453 aa2.58□□□□□ -2
HMGB1-208ENST00000490788 ASXL1Q8IXJ9 1541 aa2.58□□□□□ -2
HMGB1-208ENST00000490788 MAST1Q9Y2H9 1570 aa2.57□□□□□ -2
HMGB1-208ENST00000490788 POC1B-GALNT4F8VUJ3 575 aa2.57□□□□□ -2
HMGB1-208ENST00000490788 H7C1Q1 480 aa2.57□□□□□ -2
HMGB1-208ENST00000490788 EXOC5O00471 708 aa2.57□□□□□ -2
HMGB1-208ENST00000490788 CCNT2O60583 730 aaKnown RBP2.57□□□□□ -2
HMGB1-208ENST00000490788 CAND2O75155 1236 aa2.57□□□□□ -2
HMGB1-208ENST00000490788 RBMXL2O75526 392 aaKnown RBP2.57□□□□□ -2
HMGB1-208ENST00000490788 TJP3O95049 919 aa2.57□□□□□ -2
Retrieved 100 of 20,778 RNA–protein pairs in 17.7 ms