RNA–Protein interactions for RNA: ENST00000476085.1

MSH5-SAPCD1-205, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

APPRIS ALT2 TSL 2

Gene MSH5-SAPCD1, Length 950 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-205ENST00000476085 COBLL1Q53SF7 1204 aa12.91□□□□□ -0.34
MSH5-SAPCD1-205ENST00000476085 RAB41Q5JT25 222 aa12.91□□□□□ -0.34
MSH5-SAPCD1-205ENST00000476085 BTBD8Q5XKL5 378 aa12.91□□□□□ -0.34
MSH5-SAPCD1-205ENST00000476085 KRT39Q6A163 491 aa12.91□□□□□ -0.34
MSH5-SAPCD1-205ENST00000476085 ZC3H3Q8IXZ2 948 aaKnown RBP12.91□□□□□ -0.34
MSH5-SAPCD1-205ENST00000476085 ZNF513Q8N8E2 541 aaPredicted RBP12.91□□□□□ -0.34
MSH5-SAPCD1-205ENST00000476085 SLC4A11Q8NBS3 891 aa12.91□□□□□ -0.34
MSH5-SAPCD1-205ENST00000476085 EDEM2Q9BV94 578 aa12.91□□□□□ -0.34
MSH5-SAPCD1-205ENST00000476085 UTP3Q9NQZ2 479 aaKnown RBP eCLIP12.91□□□□□ -0.345e-14■■■■■ 86.2
MSH5-SAPCD1-205ENST00000476085 TMEM74BQ9NUR3 256 aa12.91□□□□□ -0.34
MSH5-SAPCD1-205ENST00000476085 CLIC5Q9NZA1 410 aa12.91□□□□□ -0.34
MSH5-SAPCD1-205ENST00000476085 WDR35Q9P2L0 1181 aa12.91□□□□□ -0.34
MSH5-SAPCD1-205ENST00000476085 DNMT3LQ9UJW3 386 aa12.91□□□□□ -0.34
MSH5-SAPCD1-205ENST00000476085 WASF3Q9UPY6 502 aa12.91□□□□□ -0.34
MSH5-SAPCD1-205ENST00000476085 COQ4Q9Y3A0 265 aa12.91□□□□□ -0.34
MSH5-SAPCD1-205ENST00000476085 KHNYNO15037 678 aaKnown RBP12.9□□□□□ -0.34
MSH5-SAPCD1-205ENST00000476085 STC2O76061 302 aa12.9□□□□□ -0.34
MSH5-SAPCD1-205ENST00000476085 IRF1P10914 325 aa12.9□□□□□ -0.34
MSH5-SAPCD1-205ENST00000476085 TYRP14679 529 aa12.9□□□□□ -0.34
MSH5-SAPCD1-205ENST00000476085 NTSR1P30989 418 aa12.9□□□□□ -0.34
MSH5-SAPCD1-205ENST00000476085 PTGER3P43115 390 aa12.9□□□□□ -0.34
MSH5-SAPCD1-205ENST00000476085 RAD23BP54727 409 aa12.9□□□□□ -0.34
MSH5-SAPCD1-205ENST00000476085 ANO4Q32M45 955 aa12.9□□□□□ -0.34
MSH5-SAPCD1-205ENST00000476085 ARHGAP17Q68EM7 881 aa12.9□□□□□ -0.34
MSH5-SAPCD1-205ENST00000476085 TOGARAM2Q6ZUX3 1019 aa12.9□□□□□ -0.34
MSH5-SAPCD1-205ENST00000476085 CYP2U1Q7Z449 544 aa12.9□□□□□ -0.34
MSH5-SAPCD1-205ENST00000476085 TRMT11Q7Z4G4 463 aaKnown RBP12.9□□□□□ -0.34
MSH5-SAPCD1-205ENST00000476085 SPATA20Q8TB22 786 aa12.9□□□□□ -0.34
MSH5-SAPCD1-205ENST00000476085 HMGB4Q8WW32 186 aa12.9□□□□□ -0.34
MSH5-SAPCD1-205ENST00000476085 ACOX2Q99424 681 aa12.9□□□□□ -0.34
MSH5-SAPCD1-205ENST00000476085 GABRG3Q99928 467 aa12.9□□□□□ -0.34
MSH5-SAPCD1-205ENST00000476085 IMPG2Q9BZV3 1241 aa12.9□□□□□ -0.34
MSH5-SAPCD1-205ENST00000476085 PILRBQ9UKJ0 227 aa12.9□□□□□ -0.34
MSH5-SAPCD1-205ENST00000476085 NUDT5Q9UKK9 219 aa12.9□□□□□ -0.34
MSH5-SAPCD1-205ENST00000476085 CHD6Q8TD26 2715 aa12.9□□□□□ -0.34
MSH5-SAPCD1-205ENST00000476085 PCDH15Q96QU1 1955 aa12.9□□□□□ -0.34
MSH5-SAPCD1-205ENST00000476085 ADAMTS9Q9P2N4 1935 aa12.9□□□□□ -0.35
MSH5-SAPCD1-205ENST00000476085 KNL1Q8NG31 2342 aa12.89□□□□□ -0.35
MSH5-SAPCD1-205ENST00000476085 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa12.89□□□□□ -0.35
MSH5-SAPCD1-205ENST00000476085 TCRBV21S2A2A0A5A6 115 aa12.89□□□□□ -0.35
MSH5-SAPCD1-205ENST00000476085 MDM4O15151 490 aa12.89□□□□□ -0.35
MSH5-SAPCD1-205ENST00000476085 KRT37O76014 449 aa12.89□□□□□ -0.35
MSH5-SAPCD1-205ENST00000476085 PENKP01210 267 aaPredicted RBP12.89□□□□□ -0.35
MSH5-SAPCD1-205ENST00000476085 KRT13P13646 458 aa12.89□□□□□ -0.35
MSH5-SAPCD1-205ENST00000476085 ENPP2Q13822 863 aa12.89□□□□□ -0.35
MSH5-SAPCD1-205ENST00000476085 BYSLQ13895 437 aaKnown RBP12.89□□□□□ -0.35
MSH5-SAPCD1-205ENST00000476085 C10orf76Q5T2E6 689 aa12.89□□□□□ -0.35
MSH5-SAPCD1-205ENST00000476085 EGFLAMQ63HQ2 1017 aa12.89□□□□□ -0.35
MSH5-SAPCD1-205ENST00000476085 PM20D1Q6GTS8 502 aa12.89□□□□□ -0.35
MSH5-SAPCD1-205ENST00000476085 GRAMD4Q6IC98 578 aa12.89□□□□□ -0.35
MSH5-SAPCD1-205ENST00000476085 SLC23A3Q6PIS1 610 aa12.89□□□□□ -0.35
MSH5-SAPCD1-205ENST00000476085 NUDT18Q6ZVK8 323 aa12.89□□□□□ -0.35
MSH5-SAPCD1-205ENST00000476085 LPCAT2Q7L5N7 544 aa12.89□□□□□ -0.35
MSH5-SAPCD1-205ENST00000476085 SYT12Q8IV01 421 aa12.89□□□□□ -0.35
MSH5-SAPCD1-205ENST00000476085 TMEFF1Q8IYR6 380 aa12.89□□□□□ -0.35
MSH5-SAPCD1-205ENST00000476085 TTC39CQ8N584 583 aa12.89□□□□□ -0.35
MSH5-SAPCD1-205ENST00000476085 FBXL13Q8NEE6 735 aa12.89□□□□□ -0.35
MSH5-SAPCD1-205ENST00000476085 TATDN2Q93075 761 aa12.89□□□□□ -0.35
MSH5-SAPCD1-205ENST00000476085 CCDC47Q96A33 483 aaKnown RBP12.89□□□□□ -0.35
MSH5-SAPCD1-205ENST00000476085 BBS2Q9BXC9 721 aa12.89□□□□□ -0.35
MSH5-SAPCD1-205ENST00000476085 NACA2Q9H009 215 aa12.89□□□□□ -0.35
MSH5-SAPCD1-205ENST00000476085 TMEM9BQ9NQ34 198 aa12.89□□□□□ -0.35
MSH5-SAPCD1-205ENST00000476085 CISHQ9NSE2 258 aa12.89□□□□□ -0.35
MSH5-SAPCD1-205ENST00000476085 DNAJC17Q9NVM6 304 aaKnown RBP12.89□□□□□ -0.35
MSH5-SAPCD1-205ENST00000476085 RAB20Q9NX57 234 aa12.89□□□□□ -0.35
MSH5-SAPCD1-205ENST00000476085 ANGPTL2Q9UKU9 493 aa12.89□□□□□ -0.35
MSH5-SAPCD1-205ENST00000476085 SLC27A6Q9Y2P4 619 aa12.89□□□□□ -0.35
MSH5-SAPCD1-205ENST00000476085 CKAP5Q14008 2032 aa12.89□□□□□ -0.35
MSH5-SAPCD1-205ENST00000476085 ZZEF1O43149 2961 aa12.88□□□□□ -0.35
MSH5-SAPCD1-205ENST00000476085 NEDD8-MDP1E9PL57 170 aa12.88□□□□□ -0.35
MSH5-SAPCD1-205ENST00000476085 GFRA2O00451 464 aa12.88□□□□□ -0.35
MSH5-SAPCD1-205ENST00000476085 GIPC1O14908 333 aa12.88□□□□□ -0.35
MSH5-SAPCD1-205ENST00000476085 CD58P19256 250 aa12.88□□□□□ -0.35
MSH5-SAPCD1-205ENST00000476085 TRIM21P19474 475 aaKnown RBP12.88□□□□□ -0.35
MSH5-SAPCD1-205ENST00000476085 CSRP1P21291 193 aaKnown RBP12.88□□□□□ -0.35
MSH5-SAPCD1-205ENST00000476085 HOXD12P35452 270 aa12.88□□□□□ -0.35
MSH5-SAPCD1-205ENST00000476085 PRCPP42785 496 aa12.88□□□□□ -0.35
MSH5-SAPCD1-205ENST00000476085 DHPSP49366 369 aaPredicted RBP12.88□□□□□ -0.35
MSH5-SAPCD1-205ENST00000476085 C10orf120Q5SQS8 335 aa12.88□□□□□ -0.35
MSH5-SAPCD1-205ENST00000476085 DAB2IPQ5VWQ8 1189 aa12.88□□□□□ -0.35
MSH5-SAPCD1-205ENST00000476085 FYB2Q5VWT5 728 aa12.88□□□□□ -0.35
MSH5-SAPCD1-205ENST00000476085 KIAA1211LQ6NV74 962 aa12.88□□□□□ -0.35
MSH5-SAPCD1-205ENST00000476085 TPGS1Q6ZTW0 290 aa12.88□□□□□ -0.35
MSH5-SAPCD1-205ENST00000476085 BHLHA9Q7RTU4 235 aa12.88□□□□□ -0.35
MSH5-SAPCD1-205ENST00000476085 FAM217AQ8IXS0 508 aa12.88□□□□□ -0.35
MSH5-SAPCD1-205ENST00000476085 SMYD4Q8IYR2 804 aaPredicted RBP12.88□□□□□ -0.35
MSH5-SAPCD1-205ENST00000476085 FMR1NBQ8N0W7 255 aaPredicted RBP12.88□□□□□ -0.35
MSH5-SAPCD1-205ENST00000476085 UBR7Q8N806 425 aa12.88□□□□□ -0.35
MSH5-SAPCD1-205ENST00000476085 ANKRD52Q8NB46 1076 aa12.88□□□□□ -0.35
MSH5-SAPCD1-205ENST00000476085 RBBP8NLQ8NC74 664 aaPredicted RBP12.88□□□□□ -0.35
MSH5-SAPCD1-205ENST00000476085 ENGASEQ8NFI3 743 aa12.88□□□□□ -0.35
MSH5-SAPCD1-205ENST00000476085 PIGKQ92643 395 aa12.88□□□□□ -0.35
MSH5-SAPCD1-205ENST00000476085 EEF2KMTQ96G04 330 aa12.88□□□□□ -0.35
MSH5-SAPCD1-205ENST00000476085 TMEM176AQ96HP8 235 aa12.88□□□□□ -0.35
MSH5-SAPCD1-205ENST00000476085 SPACA7Q96KW9 195 aa12.88□□□□□ -0.35
MSH5-SAPCD1-205ENST00000476085 HEXIM2Q96MH2 286 aaKnown RBP12.88□□□□□ -0.35
MSH5-SAPCD1-205ENST00000476085 XPO6Q96QU8 1125 aaKnown RBP12.88□□□□□ -0.35
MSH5-SAPCD1-205ENST00000476085 ARID3AQ99856 593 aa12.88□□□□□ -0.35
MSH5-SAPCD1-205ENST00000476085 LSM7Q9UK45 103 aaKnown RBP12.88□□□□□ -0.35
MSH5-SAPCD1-205ENST00000476085 ZNF510Q9Y2H8 683 aa12.88□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 32.2 ms