RNA–Protein interactions for RNA: ENST00000471701.1

PRPF40A-207, Transcript of pre-mRNA processing factor 40 homolog A, humanhuman

TSL 2

Gene PRPF40A, Length 293 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40A-207ENST00000471701 MCM5P33992 734 aa4.12□□□□□ -1.75
PRPF40A-207ENST00000471701 EIF4A1P60842 406 aaKnown RBP4.12□□□□□ -1.75
PRPF40A-207ENST00000471701 YPEL5P62699 121 aa4.12□□□□□ -1.75
PRPF40A-207ENST00000471701 CCDC15Q0P6D6 951 aa4.12□□□□□ -1.75
PRPF40A-207ENST00000471701 ARHGAP29Q52LW3 1261 aa4.12□□□□□ -1.75
PRPF40A-207ENST00000471701 MANEAQ5SRI9 462 aa4.12□□□□□ -1.75
PRPF40A-207ENST00000471701 PPP4R4Q6NUP7 873 aa4.12□□□□□ -1.75
PRPF40A-207ENST00000471701 APOA5Q6Q788 366 aa4.12□□□□□ -1.75
PRPF40A-207ENST00000471701 C9orf47Q6ZRZ4 202 aa4.12□□□□□ -1.75
PRPF40A-207ENST00000471701 SKAP1Q86WV1 359 aa4.12□□□□□ -1.75
PRPF40A-207ENST00000471701 P3H2Q8IVL5 708 aa4.12□□□□□ -1.75
PRPF40A-207ENST00000471701 SDR16C5Q8N3Y7 309 aa4.12□□□□□ -1.75
PRPF40A-207ENST00000471701 METTL25Q8N6Q8 603 aa4.12□□□□□ -1.75
PRPF40A-207ENST00000471701 WDYHV1Q96HA8 205 aa4.12□□□□□ -1.75
PRPF40A-207ENST00000471701 THOC3Q96J01 351 aaKnown RBP4.12□□□□□ -1.75
PRPF40A-207ENST00000471701 DKK4Q9UBT3 224 aa4.12□□□□□ -1.75
PRPF40A-207ENST00000471701 MID2Q9UJV3 735 aa4.12□□□□□ -1.75
PRPF40A-207ENST00000471701 NOB1Q9ULX3 412 aaKnown RBP4.12□□□□□ -1.75
PRPF40A-207ENST00000471701 AGPSO00116 658 aa4.11□□□□□ -1.75
PRPF40A-207ENST00000471701 TMEM225BP0DP42 221 aa4.11□□□□□ -1.75
PRPF40A-207ENST00000471701 NTSR1P30989 418 aa4.11□□□□□ -1.75
PRPF40A-207ENST00000471701 IL6STP40189 918 aaPredicted RBP4.11□□□□□ -1.75
PRPF40A-207ENST00000471701 CDKN2AP42771 156 aaKnown RBP4.11□□□□□ -1.75
PRPF40A-207ENST00000471701 THBS3P49746 956 aa4.11□□□□□ -1.75
PRPF40A-207ENST00000471701 JAK3P52333 1124 aa4.11□□□□□ -1.75
PRPF40A-207ENST00000471701 RPS16P62249 146 aaKnown RBP4.11□□□□□ -1.75
PRPF40A-207ENST00000471701 GPC5P78333 572 aa4.11□□□□□ -1.75
PRPF40A-207ENST00000471701 SRSF1Q07955 248 aaKnown RBP eCLIP4.11□□□□□ -1.75
PRPF40A-207ENST00000471701 MTX1Q13505 466 aa4.11□□□□□ -1.75
PRPF40A-207ENST00000471701 KPNB1Q14974 876 aaKnown RBP4.11□□□□□ -1.75
PRPF40A-207ENST00000471701 RNF220Q5VTB9 566 aa4.11□□□□□ -1.75
PRPF40A-207ENST00000471701 PLAG1Q6DJT9 500 aa4.11□□□□□ -1.75
PRPF40A-207ENST00000471701 SWSAP1Q6NVH7 229 aa4.11□□□□□ -1.75
PRPF40A-207ENST00000471701 USP49Q70CQ1 688 aa4.11□□□□□ -1.75
PRPF40A-207ENST00000471701 MEPCEQ7L2J0 689 aaKnown RBP4.11□□□□□ -1.75
PRPF40A-207ENST00000471701 MMP21Q8N119 569 aa4.11□□□□□ -1.75
PRPF40A-207ENST00000471701 FSTL5Q8N475 847 aaPredicted RBP4.11□□□□□ -1.75
PRPF40A-207ENST00000471701 ACRBPQ8NEB7 543 aa4.11□□□□□ -1.75
PRPF40A-207ENST00000471701 BCAS4Q8TDM0 211 aa4.11□□□□□ -1.75
PRPF40A-207ENST00000471701 STAG1Q8WVM7 1258 aa4.11□□□□□ -1.75
PRPF40A-207ENST00000471701 RUNDC1Q96C34 613 aa4.11□□□□□ -1.75
PRPF40A-207ENST00000471701 HIPK2Q9H2X6 1198 aa4.11□□□□□ -1.75
PRPF40A-207ENST00000471701 DNAJB11Q9UBS4 358 aa4.11□□□□□ -1.75
PRPF40A-207ENST00000471701 RIMKLBQ9ULI2 386 aa4.11□□□□□ -1.75
PRPF40A-207ENST00000471701 SLC27A6Q9Y2P4 619 aa4.11□□□□□ -1.75
PRPF40A-207ENST00000471701 LRP12Q9Y561 859 aa4.11□□□□□ -1.75
PRPF40A-207ENST00000471701 ZSCAN21Q9Y5A6 473 aaPredicted RBP4.11□□□□□ -1.75
PRPF40A-207ENST00000471701 HEMK1Q9Y5R4 338 aaPredicted RBP4.11□□□□□ -1.75
PRPF40A-207ENST00000471701 SPATA31A1Q5TZJ5 1347 aa4.11□□□□□ -1.75
PRPF40A-207ENST00000471701 CA12O43570 354 aa4.1□□□□□ -1.75
PRPF40A-207ENST00000471701 MGEA5O60502 916 aa4.1□□□□□ -1.75
PRPF40A-207ENST00000471701 T-ENOLP0DO92 83 aa4.1□□□□□ -1.75
PRPF40A-207ENST00000471701 YY1P25490 414 aa4.1□□□□□ -1.75
PRPF40A-207ENST00000471701 CDC25AP30304 524 aa4.1□□□□□ -1.75
PRPF40A-207ENST00000471701 THBS4P35443 961 aa4.1□□□□□ -1.75
PRPF40A-207ENST00000471701 CLCA4Q14CN2 919 aa4.1□□□□□ -1.75
PRPF40A-207ENST00000471701 DARS2Q6PI48 645 aaKnown RBP4.1□□□□□ -1.75
PRPF40A-207ENST00000471701 UNC13DQ70J99 1090 aa4.1□□□□□ -1.75
PRPF40A-207ENST00000471701 KAZALD1Q96I82 304 aa4.1□□□□□ -1.75
PRPF40A-207ENST00000471701 SCNM1Q9BWG6 230 aa4.1□□□□□ -1.75
PRPF40A-207ENST00000471701 TMEM45AQ9NWC5 275 aa4.1□□□□□ -1.75
PRPF40A-207ENST00000471701 COL20A1Q9P218 1284 aa4.1□□□□□ -1.75
PRPF40A-207ENST00000471701 IGLV5-39A0A0G2JS06 123 aa4.09□□□□□ -1.75
PRPF40A-207ENST00000471701 TTC34A8MYJ7 566 aa4.09□□□□□ -1.75
PRPF40A-207ENST00000471701 SYF2O95926 243 aaKnown RBP4.09□□□□□ -1.75
PRPF40A-207ENST00000471701 PLAUP00749 431 aa4.09□□□□□ -1.75
PRPF40A-207ENST00000471701 TMIGD3P0DMS9 266 aaPredicted RBP4.09□□□□□ -1.75
PRPF40A-207ENST00000471701 MYF5P13349 255 aa4.09□□□□□ -1.75
PRPF40A-207ENST00000471701 CARSP49589 748 aaKnown RBP4.09□□□□□ -1.75
PRPF40A-207ENST00000471701 B4GALNT1Q00973 533 aa4.09□□□□□ -1.75
PRPF40A-207ENST00000471701 KCNAB1Q14722 419 aa4.09□□□□□ -1.75
PRPF40A-207ENST00000471701 ZNF549Q6P9A3 640 aa4.09□□□□□ -1.75
PRPF40A-207ENST00000471701 ZNF793Q6ZN11 406 aa4.09□□□□□ -1.75
PRPF40A-207ENST00000471701 CCDC149Q6ZUS6 474 aa4.09□□□□□ -1.75
PRPF40A-207ENST00000471701 FAM57BQ71RH2 274 aa4.09□□□□□ -1.75
PRPF40A-207ENST00000471701 UEVLDQ8IX04 471 aa4.09□□□□□ -1.75
PRPF40A-207ENST00000471701 LRTOMTQ8WZ04 291 aa4.09□□□□□ -1.75
PRPF40A-207ENST00000471701 PIGKQ92643 395 aa4.09□□□□□ -1.75
PRPF40A-207ENST00000471701 TRMT61AQ96FX7 289 aaKnown RBP4.09□□□□□ -1.75
PRPF40A-207ENST00000471701 ZDHHC12Q96GR4 267 aa4.09□□□□□ -1.75
PRPF40A-207ENST00000471701 APIPQ96GX9 242 aa4.09□□□□□ -1.75
PRPF40A-207ENST00000471701 NLRP4Q96MN2 994 aa4.09□□□□□ -1.75
PRPF40A-207ENST00000471701 TUBB6Q9BUF5 446 aa4.09□□□□□ -1.75
PRPF40A-207ENST00000471701 MLXIPQ9HAP2 919 aa4.09□□□□□ -1.75
PRPF40A-207ENST00000471701 TBC1D23Q9NUY8 699 aa4.09□□□□□ -1.75
PRPF40A-207ENST00000471701 ZNF212Q9UDV6 495 aa4.09□□□□□ -1.75
PRPF40A-207ENST00000471701 HPSEQ9Y251 543 aa4.09□□□□□ -1.75
PRPF40A-207ENST00000471701 PRAMEF2O60811 474 aa4.08□□□□□ -1.76
PRPF40A-207ENST00000471701 RBL1P28749 1068 aa4.08□□□□□ -1.76
PRPF40A-207ENST00000471701 GALNSP34059 522 aa4.08□□□□□ -1.76
PRPF40A-207ENST00000471701 HTR6P50406 440 aa4.08□□□□□ -1.76
PRPF40A-207ENST00000471701 SLC12A2P55011 1212 aa4.08□□□□□ -1.76
PRPF40A-207ENST00000471701 ERV3-1Q14264 604 aa4.08□□□□□ -1.76
PRPF40A-207ENST00000471701 POLD3Q15054 466 aaPredicted RBP4.08□□□□□ -1.76
PRPF40A-207ENST00000471701 KIAA0753Q2KHM9 967 aa4.08□□□□□ -1.76
PRPF40A-207ENST00000471701 FAM102BQ5T8I3 360 aa4.08□□□□□ -1.76
PRPF40A-207ENST00000471701 MANEALQ5VSG8 457 aa4.08□□□□□ -1.76
PRPF40A-207ENST00000471701 SLC25A28Q96A46 364 aa4.08□□□□□ -1.76
PRPF40A-207ENST00000471701 TM2D2Q9BX73 214 aa4.08□□□□□ -1.76
PRPF40A-207ENST00000471701 SEMA4BQ9NPR2 832 aaPredicted RBP4.08□□□□□ -1.76
Retrieved 100 of 20,778 RNA–protein pairs in 52.4 ms