RNA–Protein interactions for RNA: ENST00000430118.1

HMGB3-203, Transcript of high mobility group box 3, humanhuman

TSL 1 (best)

Gene HMGB3, Length 529 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3-203ENST00000430118 MED15Q96RN5 788 aa4.62□□□□□ -1.67
HMGB3-203ENST00000430118 SMOQ99835 787 aa4.62□□□□□ -1.67
HMGB3-203ENST00000430118 VKORC1Q9BQB6 163 aa4.62□□□□□ -1.67
HMGB3-203ENST00000430118 NUDT22Q9BRQ3 303 aa4.62□□□□□ -1.67
HMGB3-203ENST00000430118 TMX4Q9H1E5 349 aaPredicted RBP4.62□□□□□ -1.67
HMGB3-203ENST00000430118 EPC1Q9H2F5 836 aa4.62□□□□□ -1.67
HMGB3-203ENST00000430118 ETAA1Q9NY74 926 aa4.62□□□□□ -1.67
HMGB3-203ENST00000430118 DNMT3BQ9UBC3 853 aaKnown RBP4.62□□□□□ -1.67
HMGB3-203ENST00000430118 PI4KBQ9UBF8 816 aa4.62□□□□□ -1.67
HMGB3-203ENST00000430118 FEM1BQ9UK73 627 aa4.62□□□□□ -1.67
HMGB3-203ENST00000430118 CDY1Q9Y6F8 540 aa4.62□□□□□ -1.67
HMGB3-203ENST00000430118 COL15A1P39059 1388 aa4.62□□□□□ -1.67
HMGB3-203ENST00000430118 CARMIL3Q8ND23 1372 aa4.62□□□□□ -1.67
HMGB3-203ENST00000430118 NRXN2Q9P2S2 1712 aa4.61□□□□□ -1.67
HMGB3-203ENST00000430118 B4E171 279 aa4.61□□□□□ -1.67
HMGB3-203ENST00000430118 MATN2O00339 956 aa4.61□□□□□ -1.67
HMGB3-203ENST00000430118 CCNT2O60583 730 aaKnown RBP4.61□□□□□ -1.67
HMGB3-203ENST00000430118 SNX2O60749 519 aa4.61□□□□□ -1.67
HMGB3-203ENST00000430118 KIF20AO95235 890 aa4.61□□□□□ -1.67
HMGB3-203ENST00000430118 VIPP01282 170 aa4.61□□□□□ -1.67
HMGB3-203ENST00000430118 INHBBP09529 407 aa4.61□□□□□ -1.67
HMGB3-203ENST00000430118 TAL1P17542 331 aaPredicted RBP4.61□□□□□ -1.67
HMGB3-203ENST00000430118 GNAT2P19087 354 aa4.61□□□□□ -1.67
HMGB3-203ENST00000430118 CAPN3P20807 821 aa4.61□□□□□ -1.67
HMGB3-203ENST00000430118 GCSHP23434 173 aa4.61□□□□□ -1.67
HMGB3-203ENST00000430118 TSPAN7P41732 249 aa4.61□□□□□ -1.67
HMGB3-203ENST00000430118 TXKP42681 527 aa4.61□□□□□ -1.67
HMGB3-203ENST00000430118 CRKLP46109 303 aaKnown RBP4.61□□□□□ -1.67
HMGB3-203ENST00000430118 PTDSS1P48651 473 aaKnown RBP4.61□□□□□ -1.67
HMGB3-203ENST00000430118 UBE3AQ05086 875 aa4.61□□□□□ -1.67
HMGB3-203ENST00000430118 CALD1Q05682 793 aaKnown RBP4.61□□□□□ -1.67
HMGB3-203ENST00000430118 ZNF844Q08AG5 666 aa4.61□□□□□ -1.67
HMGB3-203ENST00000430118 SURF1Q15526 300 aa4.61□□□□□ -1.67
HMGB3-203ENST00000430118 MLANAQ16655 118 aa4.61□□□□□ -1.67
HMGB3-203ENST00000430118 TIGD6Q17RP2 521 aa4.61□□□□□ -1.67
HMGB3-203ENST00000430118 DCAF17Q5H9S7 520 aaPredicted RBP4.61□□□□□ -1.67
HMGB3-203ENST00000430118 C1orf141Q5JVX7 400 aa4.61□□□□□ -1.67
HMGB3-203ENST00000430118 MAP3K21Q5TCX8 1036 aa4.61□□□□□ -1.67
HMGB3-203ENST00000430118 VPS53Q5VIR6 699 aa4.61□□□□□ -1.67
HMGB3-203ENST00000430118 ZDHHC24Q6UX98 284 aa4.61□□□□□ -1.67
HMGB3-203ENST00000430118 C4orf50Q6ZRC1 276 aa4.61□□□□□ -1.67
HMGB3-203ENST00000430118 USP49Q70CQ1 688 aa4.61□□□□□ -1.67
HMGB3-203ENST00000430118 ZNF761Q86XN6 746 aaPredicted RBP4.61□□□□□ -1.67
HMGB3-203ENST00000430118 RASGRP3Q8IV61 690 aa4.61□□□□□ -1.67
HMGB3-203ENST00000430118 GPC2Q8N158 579 aa4.61□□□□□ -1.67
HMGB3-203ENST00000430118 SLC17A8Q8NDX2 589 aa4.61□□□□□ -1.67
HMGB3-203ENST00000430118 OR52N2Q8NGI0 321 aa4.61□□□□□ -1.67
HMGB3-203ENST00000430118 TBC1D15Q8TC07 691 aa4.61□□□□□ -1.67
HMGB3-203ENST00000430118 ZBTB10Q96DT7 871 aa4.61□□□□□ -1.67
HMGB3-203ENST00000430118 LSM14BQ9BX40 385 aaKnown RBP4.61□□□□□ -1.67
HMGB3-203ENST00000430118 SLC46A2Q9BY10 475 aa4.61□□□□□ -1.67
HMGB3-203ENST00000430118 IMPG2Q9BZV3 1241 aa4.61□□□□□ -1.67
HMGB3-203ENST00000430118 OAZ3Q9UMX2 235 aa4.61□□□□□ -1.67
HMGB3-203ENST00000430118 ZDHHC9Q9Y397 364 aa4.61□□□□□ -1.67
HMGB3-203ENST00000430118 LAS1LQ9Y4W2 734 aaKnown RBP4.61□□□□□ -1.67
HMGB3-203ENST00000430118 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP4.61□□□□□ -1.67
HMGB3-203ENST00000430118 RNF123Q5XPI4 1314 aa4.61□□□□□ -1.67
HMGB3-203ENST00000430118 TONSLQ96HA7 1378 aa4.61□□□□□ -1.67
HMGB3-203ENST00000430118 NCAPD2Q15021 1401 aa4.61□□□□□ -1.67
HMGB3-203ENST00000430118 ADAMTSL1Q8N6G6 1762 aa4.6□□□□□ -1.67
HMGB3-203ENST00000430118 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa4.6□□□□□ -1.67
HMGB3-203ENST00000430118 EFCAB8A8MWE9 144 aa4.6□□□□□ -1.67
HMGB3-203ENST00000430118 H7C4K7 107 aa4.6□□□□□ -1.67
HMGB3-203ENST00000430118 FCHO1O14526 889 aa4.6□□□□□ -1.67
HMGB3-203ENST00000430118 PCDH17O14917 1159 aa4.6□□□□□ -1.67
HMGB3-203ENST00000430118 MFAP3LO75121 409 aa4.6□□□□□ -1.67
HMGB3-203ENST00000430118 PIAS2O75928 621 aa4.6□□□□□ -1.67
HMGB3-203ENST00000430118 SERPINB2P05120 415 aa4.6□□□□□ -1.67
HMGB3-203ENST00000430118 PRKCBP05771 671 aa4.6□□□□□ -1.67
HMGB3-203ENST00000430118 PPIFP30405 207 aaKnown RBP4.6□□□□□ -1.67
HMGB3-203ENST00000430118 TM4SF1P30408 202 aa4.6□□□□□ -1.67
HMGB3-203ENST00000430118 ATICP31939 592 aa4.6□□□□□ -1.67
HMGB3-203ENST00000430118 AARSP49588 968 aaKnown RBP eCLIP4.6□□□□□ -1.67
HMGB3-203ENST00000430118 PNLIPRP1P54315 467 aa4.6□□□□□ -1.67
HMGB3-203ENST00000430118 SLFN5Q08AF3 891 aa4.6□□□□□ -1.67
HMGB3-203ENST00000430118 SCAPQ12770 1279 aa4.6□□□□□ -1.67
HMGB3-203ENST00000430118 KCTD2Q14681 263 aa4.6□□□□□ -1.67
HMGB3-203ENST00000430118 ZNF385BQ569K4 471 aa4.6□□□□□ -1.67
HMGB3-203ENST00000430118 NAA35Q5VZE5 725 aa4.6□□□□□ -1.67
HMGB3-203ENST00000430118 RAP1GAP2Q684P5 730 aa4.6□□□□□ -1.67
HMGB3-203ENST00000430118 ANKS6Q68DC2 871 aa4.6□□□□□ -1.67
HMGB3-203ENST00000430118 SFRP4Q6FHJ7 346 aaPredicted RBP4.6□□□□□ -1.67
HMGB3-203ENST00000430118 NFRKBQ6P4R8 1299 aa4.6□□□□□ -1.67
HMGB3-203ENST00000430118 BBS12Q6ZW61 710 aa4.6□□□□□ -1.67
HMGB3-203ENST00000430118 ANKS1BQ7Z6G8 1248 aa4.6□□□□□ -1.67
HMGB3-203ENST00000430118 CPOQ8IVL8 374 aa4.6□□□□□ -1.67
HMGB3-203ENST00000430118 TMEM151BQ8IW70 566 aa4.6□□□□□ -1.67
HMGB3-203ENST00000430118 ZFPM1Q8IX07 1006 aa4.6□□□□□ -1.67
HMGB3-203ENST00000430118 CFAP52Q8N1V2 620 aa4.6□□□□□ -1.67
HMGB3-203ENST00000430118 LINC01356Q8N9X3 169 aa4.6□□□□□ -1.67
HMGB3-203ENST00000430118 BHLHE22Q8NFJ8 381 aaPredicted RBP4.6□□□□□ -1.67
HMGB3-203ENST00000430118 POC1BQ8TC44 478 aa4.6□□□□□ -1.67
HMGB3-203ENST00000430118 WDR60Q8WVS4 1066 aa4.6□□□□□ -1.67
HMGB3-203ENST00000430118 ST8SIA2Q92186 375 aa4.6□□□□□ -1.67
HMGB3-203ENST00000430118 MAELQ96JY0 434 aaKnown RBP4.6□□□□□ -1.67
HMGB3-203ENST00000430118 SLC46A1Q96NT5 459 aa4.6□□□□□ -1.67
HMGB3-203ENST00000430118 FMNL2Q96PY5 1086 aa4.6□□□□□ -1.67
HMGB3-203ENST00000430118 PNKPQ96T60 521 aa4.6□□□□□ -1.67
HMGB3-203ENST00000430118 KRTAP9-9Q9BYP9 154 aa4.6□□□□□ -1.67
HMGB3-203ENST00000430118 KRTAP9-4Q9BYQ2 154 aa4.6□□□□□ -1.67
Retrieved 100 of 20,778 RNA–protein pairs in 58.7 ms