RNA–Protein interactions for RNA: ENST00000427112.6

USP40-203, Transcript of ubiquitin specific peptidase 40, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene USP40, Length 3,744 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-203ENST00000427112 STOML1Q9UBI4 398 aa8.97□□□□□ -0.97
USP40-203ENST00000427112 TSPAN16Q9UKR8 245 aa8.97□□□□□ -0.97
USP40-203ENST00000427112 EVPLQ92817 2033 aa8.97□□□□□ -0.97
USP40-203ENST00000427112 PAPSS1O43252 624 aaPredicted RBP8.96□□□□□ -0.97
USP40-203ENST00000427112 CIB2O75838 187 aa8.96□□□□□ -0.97
USP40-203ENST00000427112 HDCP19113 662 aa8.96□□□□□ -0.97
USP40-203ENST00000427112 CDK16Q00536 496 aa8.96□□□□□ -0.97
USP40-203ENST00000427112 ACAP1Q15027 740 aa8.96□□□□□ -0.97
USP40-203ENST00000427112 TRIP10Q15642 601 aa8.96□□□□□ -0.97
USP40-203ENST00000427112 GOLGA7BQ2TAP0 167 aa8.96□□□□□ -0.97
USP40-203ENST00000427112 ZNF618Q5T7W0 954 aa8.96□□□□□ -0.97
USP40-203ENST00000427112 ATF7IP2Q5U623 682 aa8.96□□□□□ -0.97
USP40-203ENST00000427112 C12orf56Q8IXR9 622 aa8.96□□□□□ -0.97
USP40-203ENST00000427112 ZNF280CQ8ND82 737 aa8.96□□□□□ -0.97
USP40-203ENST00000427112 NLRP7Q8WX94 980 aa8.96□□□□□ -0.97
USP40-203ENST00000427112 TTC25Q96NG3 672 aa8.96□□□□□ -0.97
USP40-203ENST00000427112 ATXN3LQ9H3M9 355 aa8.96□□□□□ -0.97
USP40-203ENST00000427112 ACSS3Q9H6R3 686 aa8.96□□□□□ -0.97
USP40-203ENST00000427112 ACAD9Q9H845 621 aa8.96□□□□□ -0.97
USP40-203ENST00000427112 ZNF214Q9UL59 606 aaPredicted RBP8.96□□□□□ -0.97
USP40-203ENST00000427112 TIMM13Q9Y5L4 95 aaPredicted RBP8.96□□□□□ -0.97
USP40-203ENST00000427112 DYTNA2CJ06 578 aa8.96□□□□□ -0.97
USP40-203ENST00000427112 C9JVG2 144 aa8.96□□□□□ -0.97
USP40-203ENST00000427112 STX16-NPEPL1H3BU86 382 aa8.96□□□□□ -0.97
USP40-203ENST00000427112 TSPAN8P19075 237 aa8.96□□□□□ -0.97
USP40-203ENST00000427112 OSBPP22059 807 aa8.96□□□□□ -0.97
USP40-203ENST00000427112 FGFR3P22607 806 aa8.96□□□□□ -0.97
USP40-203ENST00000427112 MGAT1P26572 445 aa8.96□□□□□ -0.97
USP40-203ENST00000427112 HOXA7P31268 230 aaPredicted RBP8.96□□□□□ -0.97
USP40-203ENST00000427112 CCNFP41002 786 aa8.96□□□□□ -0.97
USP40-203ENST00000427112 YWHAZP63104 245 aaKnown RBP8.96□□□□□ -0.97
USP40-203ENST00000427112 SLC25A11Q02978 314 aaKnown RBP8.96□□□□□ -0.97
USP40-203ENST00000427112 PIGHQ14442 188 aaPredicted RBP8.96□□□□□ -0.97
USP40-203ENST00000427112 KIZQ2M2Z5 673 aa8.96□□□□□ -0.97
USP40-203ENST00000427112 SPDYCQ5MJ68 293 aa8.96□□□□□ -0.97
USP40-203ENST00000427112 N4BP2L1Q5TBK1 243 aaPredicted RBP8.96□□□□□ -0.97
USP40-203ENST00000427112 PMF1Q6P1K2 205 aa8.96□□□□□ -0.97
USP40-203ENST00000427112 IYDQ6PHW0 289 aa8.96□□□□□ -0.97
USP40-203ENST00000427112 C15orf39Q6ZRI6 1047 aa8.96□□□□□ -0.97
USP40-203ENST00000427112 PCGF5Q86SE9 256 aa8.96□□□□□ -0.97
USP40-203ENST00000427112 XYLT1Q86Y38 959 aa8.96□□□□□ -0.97
USP40-203ENST00000427112 C1orf127Q8N9H9 656 aa8.96□□□□□ -0.97
USP40-203ENST00000427112 SLC35B2Q8TB61 432 aa8.96□□□□□ -0.97
USP40-203ENST00000427112 PANX3Q96QZ0 392 aa8.96□□□□□ -0.97
USP40-203ENST00000427112 EBF3Q9H4W6 596 aa8.96□□□□□ -0.97
USP40-203ENST00000427112 EURLQ9NYK6 297 aa8.96□□□□□ -0.97
USP40-203ENST00000427112 SCOCQ9UIL1 159 aa8.96□□□□□ -0.97
USP40-203ENST00000427112 APPL1Q9UKG1 709 aa8.96□□□□□ -0.97
USP40-203ENST00000427112 PCDHGB4Q9UN71 923 aa8.96□□□□□ -0.97
USP40-203ENST00000427112 PCDHGB5Q9Y5G0 923 aa8.96□□□□□ -0.97
USP40-203ENST00000427112 XIRP2A4UGR9 3374 aa8.96□□□□□ -0.98
USP40-203ENST00000427112 A6NJR5 290 aa8.96□□□□□ -0.98
USP40-203ENST00000427112 ADCY6O43306 1168 aa8.96□□□□□ -0.98
USP40-203ENST00000427112 VHLP40337 213 aa8.96□□□□□ -0.98
USP40-203ENST00000427112 ASPAP45381 313 aa8.96□□□□□ -0.98
USP40-203ENST00000427112 NME5P56597 212 aa8.96□□□□□ -0.98
USP40-203ENST00000427112 PTPN11Q06124 597 aaPredicted RBP8.96□□□□□ -0.98
USP40-203ENST00000427112 ZNF460Q14592 562 aa8.96□□□□□ -0.98
USP40-203ENST00000427112 HSF5Q4G112 596 aaPredicted RBP8.96□□□□□ -0.98
USP40-203ENST00000427112 PAN2Q504Q3 1202 aaKnown RBP8.96□□□□□ -0.98
USP40-203ENST00000427112 FASTKD1Q53R41 847 aaKnown RBP8.96□□□□□ -0.98
USP40-203ENST00000427112 EFHC2Q5JST6 749 aa8.96□□□□□ -0.98
USP40-203ENST00000427112 PPM1LQ5SGD2 360 aa8.96□□□□□ -0.98
USP40-203ENST00000427112 UNC5AQ6ZN44 842 aa8.96□□□□□ -0.98
USP40-203ENST00000427112 SYDE1Q6ZW31 735 aaPredicted RBP8.96□□□□□ -0.98
USP40-203ENST00000427112 ENOSF1Q7L5Y1 443 aa8.96□□□□□ -0.98
USP40-203ENST00000427112 RASSF3Q86WH2 238 aa8.96□□□□□ -0.98
USP40-203ENST00000427112 C18orf25Q96B23 403 aaPredicted RBP8.96□□□□□ -0.98
USP40-203ENST00000427112 GRAMD1AQ96CP6 724 aa8.96□□□□□ -0.98
USP40-203ENST00000427112 MRPL4Q9BYD3 311 aaKnown RBP8.96□□□□□ -0.98
USP40-203ENST00000427112 DCLRE1BQ9H816 532 aa8.96□□□□□ -0.98
USP40-203ENST00000427112 DDX18Q9NVP1 670 aaKnown RBP8.96□□□□□ -0.98
USP40-203ENST00000427112 GGA3Q9NZ52 723 aa8.96□□□□□ -0.98
USP40-203ENST00000427112 CLIC5Q9NZA1 410 aa8.96□□□□□ -0.98
USP40-203ENST00000427112 SNCAIPQ9Y6H5 919 aa8.96□□□□□ -0.98
USP40-203ENST00000427112 SPECC1L-ADORA2AF8WAN1 911 aa8.95□□□□□ -0.98
USP40-203ENST00000427112 CLDN5O00501 218 aa8.95□□□□□ -0.98
USP40-203ENST00000427112 C2CD2LO14523 706 aa8.95□□□□□ -0.98
USP40-203ENST00000427112 ZWINTO95229 277 aa8.95□□□□□ -0.98
USP40-203ENST00000427112 DLDP09622 509 aaKnown RBP8.95□□□□□ -0.98
USP40-203ENST00000427112 ATP6V1C1P21283 382 aa8.95□□□□□ -0.98
USP40-203ENST00000427112 TBXAS1P24557 533 aaPredicted RBP8.95□□□□□ -0.98
USP40-203ENST00000427112 STX3Q13277 289 aa8.95□□□□□ -0.98
USP40-203ENST00000427112 MYBPC2Q14324 1141 aa8.95□□□□□ -0.98
USP40-203ENST00000427112 GK3PQ14409 553 aa8.95□□□□□ -0.98
USP40-203ENST00000427112 CTC1Q2NKJ3 1217 aa8.95□□□□□ -0.98
USP40-203ENST00000427112 KLHL38Q2WGJ6 581 aa8.95□□□□□ -0.98
USP40-203ENST00000427112 PPP1R26Q5T8A7 1209 aaPredicted RBP8.95□□□□□ -0.98
USP40-203ENST00000427112 FOXB2Q5VYV0 432 aa8.95□□□□□ -0.98
USP40-203ENST00000427112 TMEM198Q66K66 360 aa8.95□□□□□ -0.98
USP40-203ENST00000427112 SLC30A9Q6PML9 568 aa8.95□□□□□ -0.98
USP40-203ENST00000427112 CRLF3Q8IUI8 442 aa8.95□□□□□ -0.98
USP40-203ENST00000427112 SCUBE1Q8IWY4 988 aa8.95□□□□□ -0.98
USP40-203ENST00000427112 PHTF2Q8N3S3 785 aa8.95□□□□□ -0.98
USP40-203ENST00000427112 STKLD1Q8NE28 680 aa8.95□□□□□ -0.98
USP40-203ENST00000427112 TRPM4Q8TD43 1214 aa8.95□□□□□ -0.98
USP40-203ENST00000427112 UPF1Q92900 1129 aaKnown RBP eCLIP8.95□□□□□ -0.98
USP40-203ENST00000427112 KIF12Q96FN5 646 aa8.95□□□□□ -0.98
USP40-203ENST00000427112 HPDLQ96IR7 371 aa8.95□□□□□ -0.98
USP40-203ENST00000427112 TEX13BQ9BXU2 312 aa8.95□□□□□ -0.98
Retrieved 100 of 20,778 RNA–protein pairs in 31.6 ms