RNA–Protein interactions for RNA: ENST00000409435.5

SCN9A-202, Transcript of sodium voltage-gated channel alpha subunit 9, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene SCN9A, Length 5,967 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN9A-202ENST00000409435 GYG2O15488 501 aa7.55□□□□□ -1.2
SCN9A-202ENST00000409435 CNPP09543 421 aaKnown RBP7.55□□□□□ -1.2
SCN9A-202ENST00000409435 WEE2P0C1S8 567 aa7.55□□□□□ -1.2
SCN9A-202ENST00000409435 CDC27P30260 824 aa7.55□□□□□ -1.2
SCN9A-202ENST00000409435 LRPAP1P30533 357 aa7.55□□□□□ -1.2
SCN9A-202ENST00000409435 ADCY8P40145 1251 aa7.55□□□□□ -1.2
SCN9A-202ENST00000409435 PLA2G4AP47712 749 aa7.55□□□□□ -1.2
SCN9A-202ENST00000409435 BCAT1P54687 386 aa7.55□□□□□ -1.2
SCN9A-202ENST00000409435 TARBP2Q15633 366 aaKnown RBP7.55□□□□□ -1.2
SCN9A-202ENST00000409435 E4F1Q66K89 784 aaPredicted RBP7.55□□□□□ -1.2
SCN9A-202ENST00000409435 KLC3Q6P597 504 aa7.55□□□□□ -1.2
SCN9A-202ENST00000409435 DOK6Q6PKX4 331 aa7.55□□□□□ -1.2
SCN9A-202ENST00000409435 GUF1Q8N442 669 aaKnown RBP7.55□□□□□ -1.2
SCN9A-202ENST00000409435 SYT2Q8N9I0 419 aaPredicted RBP7.55□□□□□ -1.2
SCN9A-202ENST00000409435 HPS3Q969F9 1004 aa7.55□□□□□ -1.2
SCN9A-202ENST00000409435 PPP1R2P1Q96PQ5 205 aa7.55□□□□□ -1.2
SCN9A-202ENST00000409435 CCDC90BQ9GZT6 254 aa7.55□□□□□ -1.2
SCN9A-202ENST00000409435 ASB7Q9H672 318 aa7.55□□□□□ -1.2
SCN9A-202ENST00000409435 ABI3Q9P2A4 366 aa7.55□□□□□ -1.2
SCN9A-202ENST00000409435 FBXL5Q9UKA1 691 aa7.55□□□□□ -1.2
SCN9A-202ENST00000409435 GPSM3Q9Y4H4 160 aa7.55□□□□□ -1.2
SCN9A-202ENST00000409435 KLRG2A4D1S0 409 aaPredicted RBP7.54□□□□□ -1.2
SCN9A-202ENST00000409435 SEC31AO94979 1220 aaKnown RBP7.54□□□□□ -1.2
SCN9A-202ENST00000409435 IQCF3P0C7M6 154 aa7.54□□□□□ -1.2
SCN9A-202ENST00000409435 NR1D1P20393 614 aa7.54□□□□□ -1.2
SCN9A-202ENST00000409435 ITGAXP20702 1163 aa7.54□□□□□ -1.2
SCN9A-202ENST00000409435 AKT2P31751 481 aa7.54□□□□□ -1.2
SCN9A-202ENST00000409435 SKP1P63208 163 aa7.54□□□□□ -1.2
SCN9A-202ENST00000409435 TBL3Q12788 808 aaKnown RBP7.54□□□□□ -1.2
SCN9A-202ENST00000409435 TJAP1Q5JTD0 557 aa7.54□□□□□ -1.2
SCN9A-202ENST00000409435 C10orf76Q5T2E6 689 aa7.54□□□□□ -1.2
SCN9A-202ENST00000409435 LPCAT2Q7L5N7 544 aa7.54□□□□□ -1.2
SCN9A-202ENST00000409435 CCDC103Q8IW40 242 aa7.54□□□□□ -1.2
SCN9A-202ENST00000409435 SUN3Q8TAQ9 357 aa7.54□□□□□ -1.2
SCN9A-202ENST00000409435 CYFIP2Q96F07 1278 aa7.54□□□□□ -1.2
SCN9A-202ENST00000409435 PURBQ96QR8 312 aaKnown RBP7.54□□□□□ -1.2
SCN9A-202ENST00000409435 HAPLN3Q96S86 360 aa7.54□□□□□ -1.2
SCN9A-202ENST00000409435 ARHGEF4Q9NR80 690 aa7.54□□□□□ -1.2
SCN9A-202ENST00000409435 MRGBPQ9NV56 204 aa7.54□□□□□ -1.2
SCN9A-202ENST00000409435 MPP6Q9NZW5 540 aa7.54□□□□□ -1.2
SCN9A-202ENST00000409435 BARX2Q9UMQ3 279 aaPredicted RBP7.54□□□□□ -1.2
SCN9A-202ENST00000409435 HEY1Q9Y5J3 304 aa7.54□□□□□ -1.2
SCN9A-202ENST00000409435 NPHP3-ACAD11A0A0J9YXS1 232 aa7.54□□□□□ -1.2
SCN9A-202ENST00000409435 CCDC78A2IDD5 438 aa7.54□□□□□ -1.2
SCN9A-202ENST00000409435 RNASEH2AO75792 299 aaKnown RBP7.54□□□□□ -1.2
SCN9A-202ENST00000409435 SLC2A4P14672 509 aa7.54□□□□□ -1.2
SCN9A-202ENST00000409435 BDNFP23560 247 aa7.54□□□□□ -1.2
SCN9A-202ENST00000409435 ACAT1P24752 427 aaKnown RBP7.54□□□□□ -1.2
SCN9A-202ENST00000409435 PBLDP30039 288 aaPredicted RBP7.54□□□□□ -1.2
SCN9A-202ENST00000409435 TRIM71Q2Q1W2 868 aaKnown RBP7.54□□□□□ -1.2
SCN9A-202ENST00000409435 BTNL9Q6UXG8 535 aa7.54□□□□□ -1.2
SCN9A-202ENST00000409435 PLD3Q8IV08 490 aa7.54□□□□□ -1.2
SCN9A-202ENST00000409435 DCLK2Q8N568 766 aa7.54□□□□□ -1.2
SCN9A-202ENST00000409435 TNIP2Q8NFZ5 429 aa7.54□□□□□ -1.2
SCN9A-202ENST00000409435 OXER1Q8TDS5 423 aa7.54□□□□□ -1.2
SCN9A-202ENST00000409435 ARL8AQ96BM9 186 aa7.54□□□□□ -1.2
SCN9A-202ENST00000409435 SERPINB11Q96P15 392 aa7.54□□□□□ -1.2
SCN9A-202ENST00000409435 OLFM1Q99784 485 aa7.54□□□□□ -1.2
SCN9A-202ENST00000409435 REEP2Q9BRK0 252 aa7.54□□□□□ -1.2
SCN9A-202ENST00000409435 TUBGCP2Q9BSJ2 902 aa7.54□□□□□ -1.2
SCN9A-202ENST00000409435 NEUROG2Q9H2A3 272 aa7.54□□□□□ -1.2
SCN9A-202ENST00000409435 COG4Q9H9E3 785 aa7.54□□□□□ -1.2
SCN9A-202ENST00000409435 CBX8Q9HC52 389 aa7.54□□□□□ -1.2
SCN9A-202ENST00000409435 PCSK1NQ9UHG2 260 aa7.54□□□□□ -1.2
SCN9A-202ENST00000409435 TSR3Q9UJK0 312 aaKnown RBP7.54□□□□□ -1.2
SCN9A-202ENST00000409435 SHPRHQ149N8 1683 aa7.54□□□□□ -1.2
SCN9A-202ENST00000409435 DDX6P26196 483 aaKnown RBP eCLIP7.54□□□□□ -1.2
SCN9A-202ENST00000409435 GRK3P35626 688 aa7.54□□□□□ -1.2
SCN9A-202ENST00000409435 KCNA1Q09470 495 aa7.54□□□□□ -1.2
SCN9A-202ENST00000409435 PDCLQ13371 301 aa7.54□□□□□ -1.2
SCN9A-202ENST00000409435 RTL3Q8N8U3 475 aaKnown RBP7.54□□□□□ -1.2
SCN9A-202ENST00000409435 KLHL23Q8NBE8 558 aa7.54□□□□□ -1.2
SCN9A-202ENST00000409435 OR14C36Q8NHC7 312 aa7.54□□□□□ -1.2
SCN9A-202ENST00000409435 RAPGEF5Q92565 580 aa7.54□□□□□ -1.2
SCN9A-202ENST00000409435 ULK4Q96C45 1275 aa7.54□□□□□ -1.2
SCN9A-202ENST00000409435 ZNF333Q96JL9 665 aa7.54□□□□□ -1.2
SCN9A-202ENST00000409435 PSMB7Q99436 277 aa7.54□□□□□ -1.2
SCN9A-202ENST00000409435 C11orf70Q9BRQ4 267 aa7.54□□□□□ -1.2
SCN9A-202ENST00000409435 CHMP2BQ9UQN3 213 aa7.54□□□□□ -1.2
SCN9A-202ENST00000409435 ASB3Q9Y575 518 aa7.54□□□□□ -1.2
SCN9A-202ENST00000409435 ARHGEF28Q8N1W1 1705 aaKnown RBP7.54□□□□□ -1.2
SCN9A-202ENST00000409435 NEMP2A6NFY4 417 aa7.54□□□□□ -1.2
SCN9A-202ENST00000409435 SYN3O14994 580 aa7.54□□□□□ -1.2
SCN9A-202ENST00000409435 CCNE1P24864 410 aa7.54□□□□□ -1.2
SCN9A-202ENST00000409435 SULT2A1Q06520 285 aa7.54□□□□□ -1.2
SCN9A-202ENST00000409435 STX12Q86Y82 276 aa7.54□□□□□ -1.2
SCN9A-202ENST00000409435 KSR1Q8IVT5 923 aa7.54□□□□□ -1.2
SCN9A-202ENST00000409435 COLGALT1Q8NBJ5 622 aa7.54□□□□□ -1.2
SCN9A-202ENST00000409435 CALML6Q8TD86 181 aa7.54□□□□□ -1.2
SCN9A-202ENST00000409435 CXorf40BQ96DE9 158 aa7.54□□□□□ -1.2
SCN9A-202ENST00000409435 NR1H4Q96RI1 486 aaPredicted RBP7.54□□□□□ -1.2
SCN9A-202ENST00000409435 RUBCNLQ9H714 662 aa7.54□□□□□ -1.2
SCN9A-202ENST00000409435 GPRC5CQ9NQ84 441 aa7.54□□□□□ -1.2
SCN9A-202ENST00000409435 DDX56Q9NY93 547 aaKnown RBP7.54□□□□□ -1.2
SCN9A-202ENST00000409435 PHF24Q9UPV7 400 aa7.54□□□□□ -1.2
SCN9A-202ENST00000409435 PTPRJQ12913 1337 aa7.54□□□□□ -1.2
SCN9A-202ENST00000409435 NVLO15381 856 aaKnown RBP7.53□□□□□ -1.2
SCN9A-202ENST00000409435 PSMD3O43242 534 aa7.53□□□□□ -1.2
SCN9A-202ENST00000409435 JMJD7P0C870 316 aa7.53□□□□□ -1.2
SCN9A-202ENST00000409435 DARSP14868 501 aaKnown RBP7.53□□□□□ -1.2
Retrieved 100 of 20,778 RNA–protein pairs in 46.4 ms