RNA–Protein interactions for RNA: ENST00000398452.6

SKA1-202, Transcript of spindle and kinetochore associated complex subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SKA1, Length 979 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1-202ENST00000398452 NCOR1O75376 2440 aa14.85□□□□□ -0.03
SKA1-202ENST00000398452 DPYSL4O14531 572 aa14.84□□□□□ -0.03
SKA1-202ENST00000398452 PRPSAP2O60256 369 aa14.84□□□□□ -0.03
SKA1-202ENST00000398452 CLASP2O75122 1294 aaKnown RBP14.84□□□□□ -0.03
SKA1-202ENST00000398452 XYLBO75191 536 aa14.84□□□□□ -0.03
SKA1-202ENST00000398452 KRT7P08729 469 aa14.84□□□□□ -0.03
SKA1-202ENST00000398452 FLT3P36888 993 aa14.84□□□□□ -0.03
SKA1-202ENST00000398452 PTPN9P43378 593 aa14.84□□□□□ -0.03
SKA1-202ENST00000398452 DNA2P51530 1060 aa14.84□□□□□ -0.03
SKA1-202ENST00000398452 CLCN4P51793 760 aa14.84□□□□□ -0.03
SKA1-202ENST00000398452 ATP11AP98196 1134 aa14.84□□□□□ -0.03
SKA1-202ENST00000398452 TAF10Q12962 218 aa14.84□□□□□ -0.03
SKA1-202ENST00000398452 TAF5Q15542 800 aa14.84□□□□□ -0.03
SKA1-202ENST00000398452 CC2D1AQ6P1N0 951 aaPredicted RBP14.84□□□□□ -0.03
SKA1-202ENST00000398452 BEND5Q7L4P6 421 aa14.84□□□□□ -0.03
SKA1-202ENST00000398452 SLFN11Q7Z7L1 901 aa14.84□□□□□ -0.03
SKA1-202ENST00000398452 RBM23Q86U06 439 aaKnown RBP14.84□□□□□ -0.03
SKA1-202ENST00000398452 NIPA2Q8N8Q9 360 aa14.84□□□□□ -0.03
SKA1-202ENST00000398452 LRRC57Q8N9N7 239 aa14.84□□□□□ -0.03
SKA1-202ENST00000398452 NDRG1Q92597 394 aaKnown RBP14.84□□□□□ -0.03
SKA1-202ENST00000398452 PIWIL1Q96J94 861 aaKnown RBP14.84□□□□□ -0.03
SKA1-202ENST00000398452 CFAP57Q96MR6 1250 aa14.84□□□□□ -0.03
SKA1-202ENST00000398452 WDR24Q96S15 920 aa14.84□□□□□ -0.03
SKA1-202ENST00000398452 DDX23Q9BUQ8 820 aaKnown RBP14.84□□□□□ -0.03
SKA1-202ENST00000398452 FAM204AQ9H8W3 233 aa14.84□□□□□ -0.03
SKA1-202ENST00000398452 MAN1C1Q9NR34 630 aa14.84□□□□□ -0.03
SKA1-202ENST00000398452 GMIPQ9P107 970 aa14.84□□□□□ -0.03
SKA1-202ENST00000398452 HYOU1Q9Y4L1 999 aa14.84□□□□□ -0.03
SKA1-202ENST00000398452 PLXNA4Q9HCM2 1894 aa14.83□□□□□ -0.04
SKA1-202ENST00000398452 A0A1W2PQH9 124 aa14.83□□□□□ -0.04
SKA1-202ENST00000398452 TNFRSF10AO00220 468 aa14.83□□□□□ -0.04
SKA1-202ENST00000398452 ENC1O14682 589 aa14.83□□□□□ -0.04
SKA1-202ENST00000398452 URI1O94763 535 aaPredicted RBP14.83□□□□□ -0.04
SKA1-202ENST00000398452 FGF19O95750 216 aa14.83□□□□□ -0.04
SKA1-202ENST00000398452 F9P00740 461 aa14.83□□□□□ -0.04
SKA1-202ENST00000398452 TCP1P17987 556 aaKnown RBP14.83□□□□□ -0.04
SKA1-202ENST00000398452 GJC1P36383 396 aa14.83□□□□□ -0.04
SKA1-202ENST00000398452 KCNQ1P51787 676 aa14.83□□□□□ -0.04
SKA1-202ENST00000398452 DEUP1Q05D60 604 aa14.83□□□□□ -0.04
SKA1-202ENST00000398452 MTMR3Q13615 1198 aa14.83□□□□□ -0.04
SKA1-202ENST00000398452 TUBB2AQ13885 445 aa14.83□□□□□ -0.04
SKA1-202ENST00000398452 ARL13BQ3SXY8 428 aa14.83□□□□□ -0.04
SKA1-202ENST00000398452 SLC25A52Q3SY17 297 aa14.83□□□□□ -0.04
SKA1-202ENST00000398452 MEI1Q5TIA1 1274 aa14.83□□□□□ -0.04
SKA1-202ENST00000398452 SCYL2Q6P3W7 929 aa14.83□□□□□ -0.04
SKA1-202ENST00000398452 LILRA6Q6PI73 481 aa14.83□□□□□ -0.04
SKA1-202ENST00000398452 STRADAQ7RTN6 431 aa14.83□□□□□ -0.04
SKA1-202ENST00000398452 DNAJB7Q7Z6W7 309 aaPredicted RBP14.83□□□□□ -0.04
SKA1-202ENST00000398452 NT5DC3Q86UY8 548 aa14.83□□□□□ -0.04
SKA1-202ENST00000398452 FAM172AQ8WUF8 416 aa14.83□□□□□ -0.04
SKA1-202ENST00000398452 EDEM1Q92611 657 aa14.83□□□□□ -0.04
SKA1-202ENST00000398452 RNF34Q969K3 372 aa14.83□□□□□ -0.04
SKA1-202ENST00000398452 PSMG2Q969U7 264 aa14.83□□□□□ -0.04
SKA1-202ENST00000398452 MRPL38Q96DV4 380 aaKnown RBP14.83□□□□□ -0.04
SKA1-202ENST00000398452 SLC2A13Q96QE2 648 aa14.83□□□□□ -0.04
SKA1-202ENST00000398452 UHRF1Q96T88 793 aaPredicted RBP14.83□□□□□ -0.04
SKA1-202ENST00000398452 TUBB2BQ9BVA1 445 aa14.83□□□□□ -0.04
SKA1-202ENST00000398452 TTLL2Q9BWV7 592 aa14.83□□□□□ -0.04
SKA1-202ENST00000398452 TRIM7Q9C029 511 aa14.83□□□□□ -0.04
SKA1-202ENST00000398452 GOLPH3Q9H4A6 298 aa14.83□□□□□ -0.04
SKA1-202ENST00000398452 CLIC5Q9NZA1 410 aa14.83□□□□□ -0.04
SKA1-202ENST00000398452 SAR1BQ9Y6B6 198 aa14.83□□□□□ -0.04
SKA1-202ENST00000398452 SYNJ2BP-COX16A0A087WUM0 186 aa14.82□□□□□ -0.04
SKA1-202ENST00000398452 M0QYT0 321 aa14.82□□□□□ -0.04
SKA1-202ENST00000398452 KCNK3O14649 394 aa14.82□□□□□ -0.04
SKA1-202ENST00000398452 PER2O15055 1255 aa14.82□□□□□ -0.04
SKA1-202ENST00000398452 PSTPIP1O43586 416 aa14.82□□□□□ -0.04
SKA1-202ENST00000398452 ZMYND10O75800 440 aa14.82□□□□□ -0.04
SKA1-202ENST00000398452 HNRNPA1P09651 372 aaKnown RBP eCLIP14.82□□□□□ -0.04
SKA1-202ENST00000398452 RDXP35241 583 aaKnown RBP14.82□□□□□ -0.04
SKA1-202ENST00000398452 PCK1P35558 622 aa14.82□□□□□ -0.04
SKA1-202ENST00000398452 NRIP1P48552 1158 aa14.82□□□□□ -0.04
SKA1-202ENST00000398452 RWDD2BP57060 319 aa14.82□□□□□ -0.04
SKA1-202ENST00000398452 USP46P62068 366 aa14.82□□□□□ -0.04
SKA1-202ENST00000398452 CAMK1Q14012 370 aa14.82□□□□□ -0.04
SKA1-202ENST00000398452 CCDC14Q49A88 953 aa14.82□□□□□ -0.04
SKA1-202ENST00000398452 SEL1L2Q5TEA6 688 aa14.82□□□□□ -0.04
SKA1-202ENST00000398452 CCDC181Q5TID7 509 aa14.82□□□□□ -0.04
SKA1-202ENST00000398452 HFE2Q6ZVN8 426 aa14.82□□□□□ -0.04
SKA1-202ENST00000398452 CASP10Q92851 521 aa14.82□□□□□ -0.04
SKA1-202ENST00000398452 TRMT2BQ96GJ1 504 aaKnown RBP14.82□□□□□ -0.04
SKA1-202ENST00000398452 SERPINB11Q96P15 392 aa14.82□□□□□ -0.04
SKA1-202ENST00000398452 NSUN3Q9H649 340 aaKnown RBP14.82□□□□□ -0.04
SKA1-202ENST00000398452 PIDD1Q9HB75 910 aa14.82□□□□□ -0.04
SKA1-202ENST00000398452 ASAH2Q9NR71 780 aa14.82□□□□□ -0.04
SKA1-202ENST00000398452 DDX56Q9NY93 547 aaKnown RBP14.82□□□□□ -0.04
SKA1-202ENST00000398452 IL37Q9NZH6 218 aa14.82□□□□□ -0.04
SKA1-202ENST00000398452 COX16Q9P0S2 106 aa14.82□□□□□ -0.04
SKA1-202ENST00000398452 NAALADL1Q9UQQ1 740 aa14.82□□□□□ -0.04
SKA1-202ENST00000398452 BRWD1Q9NSI6 2320 aa14.81□□□□□ -0.04
SKA1-202ENST00000398452 FAM92AA1XBS5 289 aa14.81□□□□□ -0.04
SKA1-202ENST00000398452 NCK2O43639 380 aa14.81□□□□□ -0.04
SKA1-202ENST00000398452 ATP1A1P05023 1023 aaKnown RBP14.81□□□□□ -0.04
SKA1-202ENST00000398452 RARGP13631 454 aa14.81□□□□□ -0.04
SKA1-202ENST00000398452 EPCAMP16422 314 aa14.81□□□□□ -0.04
SKA1-202ENST00000398452 CTNNA2P26232 953 aa14.81□□□□□ -0.04
SKA1-202ENST00000398452 CDC25CP30307 473 aa14.81□□□□□ -0.04
SKA1-202ENST00000398452 HOXA9P31269 272 aa14.81□□□□□ -0.04
SKA1-202ENST00000398452 OGDHQ02218 1023 aa14.81□□□□□ -0.04
SKA1-202ENST00000398452 NME3Q13232 169 aa14.81□□□□□ -0.04
Retrieved 100 of 20,778 RNA–protein pairs in 64 ms