RNA–Protein interactions for RNA: ENST00000397606.7

PTPRD-204, Transcript of protein tyrosine phosphatase, receptor type D, humanhuman

TSL 1 (best) BASIC

Gene PTPRD, Length 5,038 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRD-204ENST00000397606 CARNMT1Q8N4J0 409 aa8.58□□□□□ -1.04
PTPRD-204ENST00000397606 STK32AQ8WU08 396 aa8.58□□□□□ -1.04
PTPRD-204ENST00000397606 C2orf15Q8WU43 125 aaKnown RBP8.58□□□□□ -1.04
PTPRD-204ENST00000397606 TRIM51Q9BSJ1 452 aa8.58□□□□□ -1.04
PTPRD-204ENST00000397606 BRD8Q9H0E9 1235 aa8.58□□□□□ -1.04
PTPRD-204ENST00000397606 TKTL2Q9H0I9 626 aa8.58□□□□□ -1.04
PTPRD-204ENST00000397606 R3HDMLQ9H3Y0 253 aa8.58□□□□□ -1.04
PTPRD-204ENST00000397606 ERVK-5Q9HDB9 667 aa8.58□□□□□ -1.04
PTPRD-204ENST00000397606 MID2Q9UJV3 735 aa8.58□□□□□ -1.04
PTPRD-204ENST00000397606 SSC5DA1L4H1 1573 aa8.58□□□□□ -1.04
PTPRD-204ENST00000397606 TRAV19A0A0A6YYK7 116 aa8.58□□□□□ -1.04
PTPRD-204ENST00000397606 ZNF197O14709 1029 aa8.58□□□□□ -1.04
PTPRD-204ENST00000397606 NRP1O14786 923 aa8.58□□□□□ -1.04
PTPRD-204ENST00000397606 FGF19O95750 216 aa8.58□□□□□ -1.04
PTPRD-204ENST00000397606 IQCF3P0C7M6 154 aa8.58□□□□□ -1.04
PTPRD-204ENST00000397606 RARGP13631 454 aa8.58□□□□□ -1.04
PTPRD-204ENST00000397606 GEMIN4P57678 1058 aaKnown RBP8.58□□□□□ -1.04
PTPRD-204ENST00000397606 SESN2P58004 480 aaPredicted RBP8.58□□□□□ -1.04
PTPRD-204ENST00000397606 CCDC15Q0P6D6 951 aa8.58□□□□□ -1.04
PTPRD-204ENST00000397606 ASPHQ12797 758 aa8.58□□□□□ -1.04
PTPRD-204ENST00000397606 TIGD5Q53EQ6 642 aa8.58□□□□□ -1.04
PTPRD-204ENST00000397606 ACBD5Q5T8D3 534 aaPredicted RBP8.58□□□□□ -1.04
PTPRD-204ENST00000397606 PLPP4Q5VZY2 271 aa8.58□□□□□ -1.04
PTPRD-204ENST00000397606 TTC30AQ86WT1 665 aa8.58□□□□□ -1.04
PTPRD-204ENST00000397606 KATNAL2Q8IYT4 538 aa8.58□□□□□ -1.04
PTPRD-204ENST00000397606 PPHLN1Q8NEY8 458 aaKnown RBP8.58□□□□□ -1.04
PTPRD-204ENST00000397606 OR6P1Q8NGX9 317 aa8.58□□□□□ -1.04
PTPRD-204ENST00000397606 TTYH3Q9C0H2 523 aa8.58□□□□□ -1.04
PTPRD-204ENST00000397606 RGS18Q9NS28 235 aa8.58□□□□□ -1.04
PTPRD-204ENST00000397606 EIF2AK3Q9NZJ5 1116 aaKnown RBP8.58□□□□□ -1.04
PTPRD-204ENST00000397606 VPS28Q9UK41 221 aa8.58□□□□□ -1.04
PTPRD-204ENST00000397606 RBAK-RBAKDNI3L0D1 243 aa8.57□□□□□ -1.04
PTPRD-204ENST00000397606 EBAG9O00559 213 aa8.57□□□□□ -1.04
PTPRD-204ENST00000397606 SLC9A3R1O14745 358 aaPredicted RBP8.57□□□□□ -1.04
PTPRD-204ENST00000397606 RAD51CO43502 376 aa8.57□□□□□ -1.04
PTPRD-204ENST00000397606 EDIL3O43854 480 aa8.57□□□□□ -1.04
PTPRD-204ENST00000397606 GJB6O95452 261 aa8.57□□□□□ -1.04
PTPRD-204ENST00000397606 HDCP19113 662 aa8.57□□□□□ -1.04
PTPRD-204ENST00000397606 ASPAP45381 313 aa8.57□□□□□ -1.04
PTPRD-204ENST00000397606 TUBP50607 506 aa8.57□□□□□ -1.04
PTPRD-204ENST00000397606 HGSNATQ68CP4 663 aa8.57□□□□□ -1.04
PTPRD-204ENST00000397606 KCNT2Q6UVM3 1135 aa8.57□□□□□ -1.04
PTPRD-204ENST00000397606 LINC00523Q86TU6 105 aa8.57□□□□□ -1.04
PTPRD-204ENST00000397606 DDX42Q86XP3 938 aaKnown RBP eCLIP8.57□□□□□ -1.04
PTPRD-204ENST00000397606 ATAD1Q8NBU5 361 aa8.57□□□□□ -1.04
PTPRD-204ENST00000397606 RAPGEF5Q92565 580 aa8.57□□□□□ -1.04
PTPRD-204ENST00000397606 FUBP3Q96I24 572 aaKnown RBP eCLIP8.57□□□□□ -1.04
PTPRD-204ENST00000397606 CORO1BQ9BR76 489 aa8.57□□□□□ -1.04
PTPRD-204ENST00000397606 TBK1Q9UHD2 729 aa8.57□□□□□ -1.04
PTPRD-204ENST00000397606 MRPS23Q9Y3D9 190 aaKnown RBP8.57□□□□□ -1.04
PTPRD-204ENST00000397606 ADGRA2Q96PE1 1338 aa8.57□□□□□ -1.04
PTPRD-204ENST00000397606 RNF225M0QZC1 329 aaPredicted RBP8.57□□□□□ -1.04
PTPRD-204ENST00000397606 ATP9BO43861 1147 aa8.57□□□□□ -1.04
PTPRD-204ENST00000397606 DAB1O75553 588 aa8.57□□□□□ -1.04
PTPRD-204ENST00000397606 CDC25CP30307 473 aa8.57□□□□□ -1.04
PTPRD-204ENST00000397606 NR2C2P49116 596 aa8.57□□□□□ -1.04
PTPRD-204ENST00000397606 MXRA7P84157 204 aa8.57□□□□□ -1.04
PTPRD-204ENST00000397606 PTPN20Q4JDL3 420 aa8.57□□□□□ -1.04
PTPRD-204ENST00000397606 TAF1BQ53T94 588 aaPredicted RBP8.57□□□□□ -1.04
PTPRD-204ENST00000397606 ARHGAP17Q68EM7 881 aa8.57□□□□□ -1.04
PTPRD-204ENST00000397606 RETSATQ6NUM9 610 aa8.57□□□□□ -1.04
PTPRD-204ENST00000397606 RAB44Q7Z6P3 723 aaPredicted RBP8.57□□□□□ -1.04
PTPRD-204ENST00000397606 ACTL9Q8TC94 416 aa8.57□□□□□ -1.04
PTPRD-204ENST00000397606 FIZ1Q96SL8 496 aa8.57□□□□□ -1.04
PTPRD-204ENST00000397606 TLR10Q9BXR5 811 aa8.57□□□□□ -1.04
PTPRD-204ENST00000397606 TLE6Q9H808 572 aa8.57□□□□□ -1.04
PTPRD-204ENST00000397606 KCND1Q9NSA2 647 aa8.57□□□□□ -1.04
PTPRD-204ENST00000397606 XPO7Q9UIA9 1087 aaKnown RBP8.57□□□□□ -1.04
PTPRD-204ENST00000397606 NDUFAB1O14561 156 aa8.57□□□□□ -1.04
PTPRD-204ENST00000397606 RAMP2O60895 175 aa8.57□□□□□ -1.04
PTPRD-204ENST00000397606 RNF40O75150 1001 aa8.57□□□□□ -1.04
PTPRD-204ENST00000397606 TWF1Q12792 350 aa8.57□□□□□ -1.04
PTPRD-204ENST00000397606 TRIM42Q8IWZ5 723 aa8.57□□□□□ -1.04
PTPRD-204ENST00000397606 PPIL6Q8IXY8 311 aa8.57□□□□□ -1.04
PTPRD-204ENST00000397606 SCG3Q8WXD2 468 aaKnown RBP8.57□□□□□ -1.04
PTPRD-204ENST00000397606 SUSD3Q96L08 255 aa8.57□□□□□ -1.04
PTPRD-204ENST00000397606 RBM15Q96T37 977 aaKnown RBP eCLIP8.57□□□□□ -1.04
PTPRD-204ENST00000397606 ELAC1Q9H777 363 aaKnown RBP8.57□□□□□ -1.04
PTPRD-204ENST00000397606 L2HGDHQ9H9P8 463 aa8.57□□□□□ -1.04
PTPRD-204ENST00000397606 SIX2Q9NPC8 291 aa8.57□□□□□ -1.04
PTPRD-204ENST00000397606 NEU2Q9Y3R4 380 aa8.57□□□□□ -1.04
PTPRD-204ENST00000397606 HAS3O00219 553 aa8.57□□□□□ -1.04
PTPRD-204ENST00000397606 ENPP3O14638 875 aa8.57□□□□□ -1.04
PTPRD-204ENST00000397606 OR4Q2P0C623 313 aa8.57□□□□□ -1.04
PTPRD-204ENST00000397606 SYN1P17600 705 aa8.57□□□□□ -1.04
PTPRD-204ENST00000397606 PCK1P35558 622 aa8.57□□□□□ -1.04
PTPRD-204ENST00000397606 GEMP55040 296 aa8.57□□□□□ -1.04
PTPRD-204ENST00000397606 IL9RQ01113 521 aa8.57□□□□□ -1.04
PTPRD-204ENST00000397606 SOWAHAQ2M3V2 549 aa8.57□□□□□ -1.04
PTPRD-204ENST00000397606 C15orf59Q2T9L4 293 aaPredicted RBP8.57□□□□□ -1.04
PTPRD-204ENST00000397606 KCTD16Q68DU8 428 aa8.57□□□□□ -1.04
PTPRD-204ENST00000397606 FBXO38Q6PIJ6 1188 aa8.57□□□□□ -1.04
PTPRD-204ENST00000397606 TMA16Q96EY4 203 aaKnown RBP8.57□□□□□ -1.04
PTPRD-204ENST00000397606 PCDHB18PQ96TA0 734 aa8.57□□□□□ -1.04
PTPRD-204ENST00000397606 UBXN6Q9BZV1 441 aa8.57□□□□□ -1.04
PTPRD-204ENST00000397606 AGO3Q9H9G7 860 aaKnown RBP8.57□□□□□ -1.04
PTPRD-204ENST00000397606 XAB2Q9HCS7 855 aaKnown RBP8.57□□□□□ -1.04
PTPRD-204ENST00000397606 SMYD2Q9NRG4 433 aa8.57□□□□□ -1.04
PTPRD-204ENST00000397606 NUDT5Q9UKK9 219 aa8.57□□□□□ -1.04
PTPRD-204ENST00000397606 PLAAQ9Y263 795 aa8.57□□□□□ -1.04
Retrieved 100 of 20,778 RNA–protein pairs in 32 ms