RNA–Protein interactions for RNA: ENST00000395802.7

VAPB-202, Transcript of VAMP associated protein B and C, humanhuman

TSL 1 (best) BASIC

Gene VAPB, Length 1,834 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VAPB-202ENST00000395802 SERPINB11Q96P15 392 aa14.27□□□□□ -0.12
VAPB-202ENST00000395802 FAM204AQ9H8W3 233 aa14.27□□□□□ -0.12
VAPB-202ENST00000395802 TRPM5Q9NZQ8 1165 aa14.27□□□□□ -0.12
VAPB-202ENST00000395802 NOL12Q9UGY1 213 aaKnown RBP eCLIP14.27□□□□□ -0.12
VAPB-202ENST00000395802 TTC7AQ9ULT0 858 aaPredicted RBP14.27□□□□□ -0.12
VAPB-202ENST00000395802 MAGED2Q9UNF1 606 aaPredicted RBP14.27□□□□□ -0.12
VAPB-202ENST00000395802 V9GYY5 206 aaPredicted RBP14.27□□□□□ -0.12
VAPB-202ENST00000395802 PGRMC1O00264 195 aaKnown RBP14.27□□□□□ -0.13
VAPB-202ENST00000395802 MDM4O15151 490 aa14.27□□□□□ -0.13
VAPB-202ENST00000395802 ZNF185O15231 689 aa14.27□□□□□ -0.13
VAPB-202ENST00000395802 CEP104O60308 925 aa14.27□□□□□ -0.13
VAPB-202ENST00000395802 FGF19O95750 216 aa14.27□□□□□ -0.13
VAPB-202ENST00000395802 C8AP07357 584 aa14.27□□□□□ -0.13
VAPB-202ENST00000395802 KPNA1P52294 538 aaPredicted RBP14.27□□□□□ -0.13
VAPB-202ENST00000395802 SLC25A11Q02978 314 aaKnown RBP14.27□□□□□ -0.13
VAPB-202ENST00000395802 SNX30Q5VWJ9 437 aa14.27□□□□□ -0.13
VAPB-202ENST00000395802 TRNP1Q6NT89 227 aa14.27□□□□□ -0.13
VAPB-202ENST00000395802 HFE2Q6ZVN8 426 aa14.27□□□□□ -0.13
VAPB-202ENST00000395802 GPR152Q8TDT2 470 aa14.27□□□□□ -0.13
VAPB-202ENST00000395802 COG1Q8WTW3 980 aa14.27□□□□□ -0.13
VAPB-202ENST00000395802 MAIP1Q8WWC4 291 aa14.27□□□□□ -0.13
VAPB-202ENST00000395802 KRT35Q92764 455 aa14.27□□□□□ -0.13
VAPB-202ENST00000395802 RANBP2P49792 3224 aaKnown RBP14.26□□□□□ -0.13
VAPB-202ENST00000395802 A0A1W2PPC1 479 aa14.26□□□□□ -0.13
VAPB-202ENST00000395802 A0A1W2PQH9 124 aa14.26□□□□□ -0.13
VAPB-202ENST00000395802 ARHGEF15O94989 841 aa14.26□□□□□ -0.13
VAPB-202ENST00000395802 TRUB2O95900 331 aaKnown RBP14.26□□□□□ -0.13
VAPB-202ENST00000395802 FYNP06241 537 aa14.26□□□□□ -0.13
VAPB-202ENST00000395802 SLC2A3P11169 496 aa14.26□□□□□ -0.13
VAPB-202ENST00000395802 HOXA9P31269 272 aa14.26□□□□□ -0.13
VAPB-202ENST00000395802 TUBP50607 506 aa14.26□□□□□ -0.13
VAPB-202ENST00000395802 HDAC4P56524 1084 aa14.26□□□□□ -0.13
VAPB-202ENST00000395802 TAS2R40P59535 323 aa14.26□□□□□ -0.13
VAPB-202ENST00000395802 USP46P62068 366 aa14.26□□□□□ -0.13
VAPB-202ENST00000395802 PDK2Q15119 407 aa14.26□□□□□ -0.13
VAPB-202ENST00000395802 ERCC6LQ2NKX8 1250 aa14.26□□□□□ -0.13
VAPB-202ENST00000395802 PPM1LQ5SGD2 360 aa14.26□□□□□ -0.13
VAPB-202ENST00000395802 ERMARDQ5T6L9 678 aa14.26□□□□□ -0.13
VAPB-202ENST00000395802 SYPL2Q5VXT5 272 aa14.26□□□□□ -0.13
VAPB-202ENST00000395802 DNAJB7Q7Z6W7 309 aaPredicted RBP14.26□□□□□ -0.13
VAPB-202ENST00000395802 VSIG1Q86XK7 387 aa14.26□□□□□ -0.13
VAPB-202ENST00000395802 CREG2Q8IUH2 290 aa14.26□□□□□ -0.13
VAPB-202ENST00000395802 CCDC50Q8IVM0 306 aa14.26□□□□□ -0.13
VAPB-202ENST00000395802 EDEM1Q92611 657 aa14.26□□□□□ -0.13
VAPB-202ENST00000395802 ALG3Q92685 438 aa14.26□□□□□ -0.13
VAPB-202ENST00000395802 CDCA3Q99618 268 aaPredicted RBP14.26□□□□□ -0.13
VAPB-202ENST00000395802 SMOC2Q9H3U7 446 aa14.26□□□□□ -0.13
VAPB-202ENST00000395802 DDIT4Q9NX09 232 aa14.26□□□□□ -0.13
VAPB-202ENST00000395802 GMIPQ9P107 970 aa14.26□□□□□ -0.13
VAPB-202ENST00000395802 PCSK1NQ9UHG2 260 aa14.26□□□□□ -0.13
VAPB-202ENST00000395802 GOLGA6L10A0A0M3HER8 536 aa14.25□□□□□ -0.13
VAPB-202ENST00000395802 CTAGE15A4D2H0 777 aa14.25□□□□□ -0.13
VAPB-202ENST00000395802 HNRNPA1P09651 372 aaKnown RBP eCLIP14.25□□□□□ -0.13
VAPB-202ENST00000395802 ZDHHC11BP0C7U3 371 aa14.25□□□□□ -0.13
VAPB-202ENST00000395802 CTAGE8P0CG41 777 aa14.25□□□□□ -0.13
VAPB-202ENST00000395802 ZNF135P52742 658 aaPredicted RBP14.25□□□□□ -0.13
VAPB-202ENST00000395802 NME3Q13232 169 aa14.25□□□□□ -0.13
VAPB-202ENST00000395802 NNTQ13423 1086 aa14.25□□□□□ -0.13
VAPB-202ENST00000395802 CAMK1Q14012 370 aa14.25□□□□□ -0.13
VAPB-202ENST00000395802 ELF2Q15723 593 aa14.25□□□□□ -0.13
VAPB-202ENST00000395802 ACBD5Q5T8D3 534 aaPredicted RBP14.25□□□□□ -0.13
VAPB-202ENST00000395802 BNIPLQ7Z465 357 aa14.25□□□□□ -0.13
VAPB-202ENST00000395802 SCD5Q86SK9 330 aa14.25□□□□□ -0.13
VAPB-202ENST00000395802 CTAGE6Q86UF2 777 aa14.25□□□□□ -0.13
VAPB-202ENST00000395802 CTAGE4Q8IX94 777 aa14.25□□□□□ -0.13
VAPB-202ENST00000395802 RASGEF1CQ8N431 466 aa14.25□□□□□ -0.13
VAPB-202ENST00000395802 KCTD6Q8NC69 237 aa14.25□□□□□ -0.13
VAPB-202ENST00000395802 GBF1Q92538 1859 aa14.25□□□□□ -0.13
VAPB-202ENST00000395802 CAPZA3Q96KX2 299 aa14.25□□□□□ -0.13
VAPB-202ENST00000395802 WDCPQ9H6R7 721 aa14.25□□□□□ -0.13
VAPB-202ENST00000395802 ZWILCHQ9H900 591 aa14.25□□□□□ -0.13
VAPB-202ENST00000395802 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP14.25□□□□□ -0.135e-10■■■□□ 16.6
VAPB-202ENST00000395802 PDE2AO00408 941 aaPredicted RBP14.25□□□□□ -0.13
VAPB-202ENST00000395802 XYLBO75191 536 aa14.25□□□□□ -0.13
VAPB-202ENST00000395802 KRT1P04264 644 aa14.25□□□□□ -0.13
VAPB-202ENST00000395802 RARGP13631 454 aa14.25□□□□□ -0.13
VAPB-202ENST00000395802 HMGA1P17096 107 aaKnown RBP14.25□□□□□ -0.13
VAPB-202ENST00000395802 GJC1P36383 396 aa14.25□□□□□ -0.13
VAPB-202ENST00000395802 ITIH3Q06033 890 aa14.25□□□□□ -0.13
VAPB-202ENST00000395802 MTMR3Q13615 1198 aa14.25□□□□□ -0.13
VAPB-202ENST00000395802 PPP2R5EQ16537 467 aa14.25□□□□□ -0.13
VAPB-202ENST00000395802 BRMS1LQ5PSV4 323 aa14.25□□□□□ -0.13
VAPB-202ENST00000395802 MSANTD2Q6P1R3 559 aa14.25□□□□□ -0.13
VAPB-202ENST00000395802 KLHDC10Q6PID8 442 aa14.25□□□□□ -0.13
VAPB-202ENST00000395802 ARFGAP1Q8N6T3 406 aa14.25□□□□□ -0.13
VAPB-202ENST00000395802 LEMD2Q8NC56 503 aa14.25□□□□□ -0.13
VAPB-202ENST00000395802 CMASQ8NFW8 434 aaPredicted RBP14.25□□□□□ -0.13
VAPB-202ENST00000395802 DQX1Q8TE96 717 aaKnown RBP14.25□□□□□ -0.13
VAPB-202ENST00000395802 UBXN4Q92575 508 aa14.25□□□□□ -0.13
VAPB-202ENST00000395802 RNF34Q969K3 372 aa14.25□□□□□ -0.13
VAPB-202ENST00000395802 NTAN1Q96AB6 310 aa14.25□□□□□ -0.13
VAPB-202ENST00000395802 GCNAQ96QF7 691 aa14.25□□□□□ -0.13
VAPB-202ENST00000395802 NACA2Q9H009 215 aa14.25□□□□□ -0.13
VAPB-202ENST00000395802 CERS4Q9HA82 394 aa14.25□□□□□ -0.13
VAPB-202ENST00000395802 MTPAPQ9NVV4 582 aaKnown RBP eCLIP14.25□□□□□ -0.13
VAPB-202ENST00000395802 EFR3BQ9Y2G0 817 aa14.25□□□□□ -0.13
VAPB-202ENST00000395802 LRRD1A4D1F6 860 aa14.24□□□□□ -0.13
VAPB-202ENST00000395802 SPDYE4A6NLX3 237 aa14.24□□□□□ -0.13
VAPB-202ENST00000395802 CLASP2O75122 1294 aaKnown RBP14.24□□□□□ -0.13
VAPB-202ENST00000395802 TJP3O95049 919 aa14.24□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 95.7 ms