RNA–Protein interactions for RNA: ENST00000395684.5

SHMT1-205, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 1 (best)

Gene SHMT1, Length 2,652 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-205ENST00000395684 CDT1Q9H211 546 aa13.18□□□□□ -0.3
SHMT1-205ENST00000395684 PCMTD2Q9NV79 361 aa13.18□□□□□ -0.3
SHMT1-205ENST00000395684 IGKV6-21A0A0C4DH24 114 aa13.17□□□□□ -0.3
SHMT1-205ENST00000395684 LACTBL1A8MY62 500 aa13.17□□□□□ -0.3
SHMT1-205ENST00000395684 PRR5-ARHGAP8B1AHC4 643 aa13.17□□□□□ -0.3
SHMT1-205ENST00000395684 F8W8V4 182 aa13.17□□□□□ -0.3
SHMT1-205ENST00000395684 GPR25O00155 361 aa13.17□□□□□ -0.3
SHMT1-205ENST00000395684 SNNO75324 88 aaPredicted RBP13.17□□□□□ -0.3
SHMT1-205ENST00000395684 TM7SF2O76062 418 aa13.17□□□□□ -0.3
SHMT1-205ENST00000395684 ZBED1O96006 694 aa13.17□□□□□ -0.3
SHMT1-205ENST00000395684 ALDH18A1P54886 795 aaKnown RBP13.17□□□□□ -0.3
SHMT1-205ENST00000395684 BCAR1P56945 870 aa13.17□□□□□ -0.3
SHMT1-205ENST00000395684 ARHGAP8P85298 464 aa13.17□□□□□ -0.3
SHMT1-205ENST00000395684 CA9Q16790 459 aa13.17□□□□□ -0.3
SHMT1-205ENST00000395684 CCDC14Q49A88 953 aa13.17□□□□□ -0.3
SHMT1-205ENST00000395684 DCAF15Q66K64 600 aa13.17□□□□□ -0.3
SHMT1-205ENST00000395684 OR6B2Q6IFH4 312 aa13.17□□□□□ -0.3
SHMT1-205ENST00000395684 SCYL2Q6P3W7 929 aa13.17□□□□□ -0.3
SHMT1-205ENST00000395684 RIPOR1Q6ZS17 1223 aa13.17□□□□□ -0.3
SHMT1-205ENST00000395684 ZCCHC23Q6ZST2 131 aa13.17□□□□□ -0.3
SHMT1-205ENST00000395684 ILDR2Q71H61 639 aa13.17□□□□□ -0.3
SHMT1-205ENST00000395684 ZNF534Q76KX8 674 aa13.17□□□□□ -0.3
SHMT1-205ENST00000395684 NDUFAF2Q8N183 169 aa13.17□□□□□ -0.3
SHMT1-205ENST00000395684 PPFIBP2Q8ND30 876 aa13.17□□□□□ -0.3
SHMT1-205ENST00000395684 GATA6Q92908 595 aa13.17□□□□□ -0.3
SHMT1-205ENST00000395684 ZNF184Q99676 751 aaPredicted RBP13.17□□□□□ -0.3
SHMT1-205ENST00000395684 THTPAQ9BU02 230 aa13.17□□□□□ -0.3
SHMT1-205ENST00000395684 WWP1Q9H0M0 922 aa13.17□□□□□ -0.3
SHMT1-205ENST00000395684 RPF1Q9H9Y2 349 aaKnown RBP13.17□□□□□ -0.3
SHMT1-205ENST00000395684 SLC7A8Q9UHI5 535 aa13.17□□□□□ -0.3
SHMT1-205ENST00000395684 TAGLN3Q9UI15 199 aa13.17□□□□□ -0.3
SHMT1-205ENST00000395684 MGAMO43451 1857 aa13.17□□□□□ -0.3
SHMT1-205ENST00000395684 SOWAHBA6NEL2 793 aa13.17□□□□□ -0.3
SHMT1-205ENST00000395684 MAP3K7O43318 606 aa13.17□□□□□ -0.3
SHMT1-205ENST00000395684 METTL18O95568 372 aa13.17□□□□□ -0.3
SHMT1-205ENST00000395684 BPGMP07738 259 aa13.17□□□□□ -0.3
SHMT1-205ENST00000395684 MAGEA6P43360 314 aa13.17□□□□□ -0.3
SHMT1-205ENST00000395684 SATB1Q01826 763 aa13.17□□□□□ -0.3
SHMT1-205ENST00000395684 TMEM132AQ24JP5 1023 aa13.17□□□□□ -0.3
SHMT1-205ENST00000395684 HSDL1Q3SXM5 330 aa13.17□□□□□ -0.3
SHMT1-205ENST00000395684 MICALL2Q8IY33 904 aa13.17□□□□□ -0.3
SHMT1-205ENST00000395684 ULK2Q8IYT8 1036 aa13.17□□□□□ -0.3
SHMT1-205ENST00000395684 ADGRF2Q8IZF7 708 aa13.17□□□□□ -0.3
SHMT1-205ENST00000395684 SIGLEC10Q96LC7 697 aa13.17□□□□□ -0.3
SHMT1-205ENST00000395684 TSC22D3Q99576 134 aa13.17□□□□□ -0.3
SHMT1-205ENST00000395684 FRMD8Q9BZ67 464 aaPredicted RBP13.17□□□□□ -0.3
SHMT1-205ENST00000395684 KLC2Q9H0B6 622 aa13.17□□□□□ -0.3
SHMT1-205ENST00000395684 VCXQ9H320 206 aa13.17□□□□□ -0.3
SHMT1-205ENST00000395684 MKS1Q9NXB0 559 aa13.17□□□□□ -0.3
SHMT1-205ENST00000395684 HBS1LQ9Y450 684 aaKnown RBP13.17□□□□□ -0.3
SHMT1-205ENST00000395684 BCLAF3A2AJT9 711 aaKnown RBP13.16□□□□□ -0.3
SHMT1-205ENST00000395684 APOL1O14791 398 aa13.16□□□□□ -0.3
SHMT1-205ENST00000395684 AHCYL1O43865 530 aa13.16□□□□□ -0.3
SHMT1-205ENST00000395684 KRT38O76015 456 aa13.16□□□□□ -0.3
SHMT1-205ENST00000395684 GRIA1P42261 906 aa13.16□□□□□ -0.3
SHMT1-205ENST00000395684 UBAP2LQ14157 1087 aaKnown RBP13.16□□□□□ -0.3
SHMT1-205ENST00000395684 FOXB2Q5VYV0 432 aa13.16□□□□□ -0.3
SHMT1-205ENST00000395684 JADE1Q6IE81 842 aa13.16□□□□□ -0.3
SHMT1-205ENST00000395684 METTL7BQ6UX53 244 aa13.16□□□□□ -0.3
SHMT1-205ENST00000395684 NET1Q7Z628 596 aaPredicted RBP13.16□□□□□ -0.3
SHMT1-205ENST00000395684 CRLF3Q8IUI8 442 aa13.16□□□□□ -0.3
SHMT1-205ENST00000395684 SHKBP1Q8TBC3 707 aa13.16□□□□□ -0.3
SHMT1-205ENST00000395684 JDP2Q8WYK2 163 aa13.16□□□□□ -0.3
SHMT1-205ENST00000395684 C2orf40Q9H1Z8 148 aa13.16□□□□□ -0.3
SHMT1-205ENST00000395684 PCDH18Q9HCL0 1135 aa13.16□□□□□ -0.3
SHMT1-205ENST00000395684 SCOCQ9UIL1 159 aa13.16□□□□□ -0.3
SHMT1-205ENST00000395684 MAD1L1Q9Y6D9 718 aa13.16□□□□□ -0.3
SHMT1-205ENST00000395684 DOCK1Q14185 1865 aa13.16□□□□□ -0.3
SHMT1-205ENST00000395684 SPECC1L-ADORA2AF8WAN1 911 aa13.16□□□□□ -0.3
SHMT1-205ENST00000395684 CSDE1O75534 798 aaKnown RBP13.16□□□□□ -0.3
SHMT1-205ENST00000395684 ARIH2O95376 493 aa13.16□□□□□ -0.3
SHMT1-205ENST00000395684 GSRP00390 522 aa13.16□□□□□ -0.3
SHMT1-205ENST00000395684 PFKMP08237 780 aa13.16□□□□□ -0.3
SHMT1-205ENST00000395684 VDRP11473 427 aa13.16□□□□□ -0.3
SHMT1-205ENST00000395684 ANPEPP15144 967 aa13.16□□□□□ -0.3
SHMT1-205ENST00000395684 EDNRBP24530 442 aa13.16□□□□□ -0.3
SHMT1-205ENST00000395684 CRHR1P34998 444 aa13.16□□□□□ -0.3
SHMT1-205ENST00000395684 MAGEA3P43357 314 aa13.16□□□□□ -0.3
SHMT1-205ENST00000395684 ACTR3P61158 418 aa13.16□□□□□ -0.3
SHMT1-205ENST00000395684 SLC9A4Q6AI14 798 aa13.16□□□□□ -0.3
SHMT1-205ENST00000395684 MYLK4Q86YV6 388 aaPredicted RBP13.16□□□□□ -0.3
SHMT1-205ENST00000395684 APLFQ8IW19 511 aaPredicted RBP13.16□□□□□ -0.3
SHMT1-205ENST00000395684 MAP7D3Q8IWC1 876 aa13.16□□□□□ -0.3
SHMT1-205ENST00000395684 CHST13Q8NET6 341 aa13.16□□□□□ -0.3
SHMT1-205ENST00000395684 RILPQ96NA2 401 aa13.16□□□□□ -0.3
SHMT1-205ENST00000395684 PPP1R12CQ9BZL4 782 aa13.16□□□□□ -0.3
SHMT1-205ENST00000395684 FAM159BA6NKW6 160 aa13.16□□□□□ -0.3
SHMT1-205ENST00000395684 CLGNO14967 610 aa13.16□□□□□ -0.3
SHMT1-205ENST00000395684 GNAT1P11488 350 aa13.16□□□□□ -0.3
SHMT1-205ENST00000395684 TGM2P21980 687 aa13.16□□□□□ -0.3
SHMT1-205ENST00000395684 RGS7P49802 495 aa13.16□□□□□ -0.3
SHMT1-205ENST00000395684 CACNA2D1P54289 1103 aa13.16□□□□□ -0.3
SHMT1-205ENST00000395684 IRX4P78413 519 aa13.16□□□□□ -0.3
SHMT1-205ENST00000395684 PDK2Q15119 407 aa13.16□□□□□ -0.3
SHMT1-205ENST00000395684 BOLA3Q53S33 107 aa13.16□□□□□ -0.3
SHMT1-205ENST00000395684 SMYD5Q6GMV2 418 aa13.16□□□□□ -0.3
SHMT1-205ENST00000395684 CCDC33Q8N5R6 958 aa13.16□□□□□ -0.3
SHMT1-205ENST00000395684 C12orf29Q8N999 325 aa13.16□□□□□ -0.3
SHMT1-205ENST00000395684 STKLD1Q8NE28 680 aa13.16□□□□□ -0.3
SHMT1-205ENST00000395684 MTBPQ96DY7 904 aa13.16□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 38.6 ms