RNA–Protein interactions for RNA: ENST00000389856.9

CCDC88C-203, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 1 (best) BASIC

Gene CCDC88C, Length 1,641 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-203ENST00000389856 RDXP35241 583 aaKnown RBP18.95■□□□□ 0.62
CCDC88C-203ENST00000389856 PPM1AP35813 382 aa18.95■□□□□ 0.62
CCDC88C-203ENST00000389856 GPR17Q13304 367 aa18.95■□□□□ 0.62
CCDC88C-203ENST00000389856 SIX1Q15475 284 aaPredicted RBP18.95■□□□□ 0.62
CCDC88C-203ENST00000389856 TAZQ16635 292 aa18.95■□□□□ 0.62
CCDC88C-203ENST00000389856 SMTNL2Q2TAL5 461 aa18.95■□□□□ 0.62
CCDC88C-203ENST00000389856 ATP13A4Q4VNC1 1196 aa18.95■□□□□ 0.62
CCDC88C-203ENST00000389856 ERMARDQ5T6L9 678 aa18.95■□□□□ 0.62
CCDC88C-203ENST00000389856 RAPGEF5Q92565 580 aa18.95■□□□□ 0.62
CCDC88C-203ENST00000389856 ZNF689Q96CS4 500 aaPredicted RBP18.95■□□□□ 0.62
CCDC88C-203ENST00000389856 TMEM169Q96HH4 297 aa18.95■□□□□ 0.62
CCDC88C-203ENST00000389856 IGSF21Q96ID5 467 aa18.95■□□□□ 0.62
CCDC88C-203ENST00000389856 CALN1Q9BXU9 219 aa18.95■□□□□ 0.62
CCDC88C-203ENST00000389856 TSPYL1Q9H0U9 437 aa18.95■□□□□ 0.62
CCDC88C-203ENST00000389856 DPH5Q9H2P9 285 aa18.95■□□□□ 0.62
CCDC88C-203ENST00000389856 CWH43Q9H720 699 aa18.95■□□□□ 0.62
CCDC88C-203ENST00000389856 BACE2Q9Y5Z0 518 aa18.95■□□□□ 0.62
CCDC88C-203ENST00000389856 VWA8A3KMH1 1905 aa18.94■□□□□ 0.62
CCDC88C-203ENST00000389856 ENDOD1O94919 500 aa18.94■□□□□ 0.62
CCDC88C-203ENST00000389856 NUDT17P0C025 328 aa18.94■□□□□ 0.62
CCDC88C-203ENST00000389856 USP17L7P0C7H9 530 aa18.94■□□□□ 0.62
CCDC88C-203ENST00000389856 NDUFV1P49821 464 aa18.94■□□□□ 0.62
CCDC88C-203ENST00000389856 CDH6P55285 790 aa18.94■□□□□ 0.62
CCDC88C-203ENST00000389856 HDAC4P56524 1084 aa18.94■□□□□ 0.62
CCDC88C-203ENST00000389856 GNGT1P63211 74 aa18.94■□□□□ 0.62
CCDC88C-203ENST00000389856 SLMAPQ14BN4 828 aa18.94■□□□□ 0.62
CCDC88C-203ENST00000389856 KCNT1Q5JUK3 1230 aa18.94■□□□□ 0.62
CCDC88C-203ENST00000389856 KAZNQ674X7 775 aa18.94■□□□□ 0.62
CCDC88C-203ENST00000389856 DRICH1Q6PGQ1 229 aaPredicted RBP18.94■□□□□ 0.62
CCDC88C-203ENST00000389856 KCNT2Q6UVM3 1135 aa18.94■□□□□ 0.62
CCDC88C-203ENST00000389856 HOOK3Q86VS8 718 aa18.94■□□□□ 0.62
CCDC88C-203ENST00000389856 SCN4BQ8IWT1 228 aa18.94■□□□□ 0.62
CCDC88C-203ENST00000389856 ATL2Q8NHH9 583 aa18.94■□□□□ 0.62
CCDC88C-203ENST00000389856 CCHCR1Q8TD31 782 aa18.94■□□□□ 0.62
CCDC88C-203ENST00000389856 TRAF3IP1Q8TDR0 691 aaPredicted RBP18.94■□□□□ 0.62
CCDC88C-203ENST00000389856 UBLCP1Q8WVY7 318 aaPredicted RBP18.94■□□□□ 0.62
CCDC88C-203ENST00000389856 NT5C3BQ969T7 300 aa18.94■□□□□ 0.62
CCDC88C-203ENST00000389856 CEP295NLQ96MC4 621 aa18.94■□□□□ 0.62
CCDC88C-203ENST00000389856 SLC9A7Q96T83 725 aa18.94■□□□□ 0.62
CCDC88C-203ENST00000389856 TRIM51Q9BSJ1 452 aa18.94■□□□□ 0.62
CCDC88C-203ENST00000389856 DCLK3Q9C098 648 aa18.94■□□□□ 0.62
CCDC88C-203ENST00000389856 MCOLN1Q9GZU1 580 aa18.94■□□□□ 0.62
CCDC88C-203ENST00000389856 COMMD8Q9NX08 183 aa18.94■□□□□ 0.62
CCDC88C-203ENST00000389856 USP3Q9Y6I4 520 aa18.94■□□□□ 0.62
CCDC88C-203ENST00000389856 CYP2F1P24903 491 aa18.93■□□□□ 0.62
CCDC88C-203ENST00000389856 CDR1P51861 262 aa18.93■□□□□ 0.62
CCDC88C-203ENST00000389856 CACNA2D1P54289 1103 aa18.93■□□□□ 0.62
CCDC88C-203ENST00000389856 RPL10AP62906 217 aaKnown RBP18.93■□□□□ 0.62
CCDC88C-203ENST00000389856 FPGSQ05932 587 aa18.93■□□□□ 0.62
CCDC88C-203ENST00000389856 DEUP1Q05D60 604 aa18.93■□□□□ 0.62
CCDC88C-203ENST00000389856 ZNF844Q08AG5 666 aa18.93■□□□□ 0.62
CCDC88C-203ENST00000389856 PPP1R7Q15435 360 aa18.93■□□□□ 0.62
CCDC88C-203ENST00000389856 COL13A1Q5TAT6 717 aaPredicted RBP18.93■□□□□ 0.62
CCDC88C-203ENST00000389856 TXNRD3NBQ6F5E7 133 aa18.93■□□□□ 0.62
CCDC88C-203ENST00000389856 BBS12Q6ZW61 710 aa18.93■□□□□ 0.62
CCDC88C-203ENST00000389856 YME1L1Q96TA2 773 aa18.93■□□□□ 0.62
CCDC88C-203ENST00000389856 NPY6RQ99463 290 aa18.93■□□□□ 0.62
CCDC88C-203ENST00000389856 ZNF670Q9BS34 389 aa18.93■□□□□ 0.62
CCDC88C-203ENST00000389856 RHOBTB2Q9BYZ6 727 aa18.93■□□□□ 0.62
CCDC88C-203ENST00000389856 TCRBV7S2A1N4TA0A589 114 aa18.92■□□□□ 0.62
CCDC88C-203ENST00000389856 C3orf70A6NLC5 250 aaPredicted RBP18.92■□□□□ 0.62
CCDC88C-203ENST00000389856 YJEFN3A6XGL0 299 aa18.92■□□□□ 0.62
CCDC88C-203ENST00000389856 NT5C1B-RDH14C9J2C7 533 aa18.92■□□□□ 0.62
CCDC88C-203ENST00000389856 E7ENQ6 273 aa18.92■□□□□ 0.62
CCDC88C-203ENST00000389856 NDC80O14777 642 aa18.92■□□□□ 0.62
CCDC88C-203ENST00000389856 RTN3O95197 1032 aaPredicted RBP18.92■□□□□ 0.62
CCDC88C-203ENST00000389856 FGBP02675 491 aa18.92■□□□□ 0.62
CCDC88C-203ENST00000389856 OR4Q2P0C623 313 aa18.92■□□□□ 0.62
CCDC88C-203ENST00000389856 NCAM1P13591 858 aa18.92■□□□□ 0.62
CCDC88C-203ENST00000389856 ZFXP17010 805 aaPredicted RBP18.92■□□□□ 0.62
CCDC88C-203ENST00000389856 SLC5A3P53794 718 aa18.92■□□□□ 0.62
CCDC88C-203ENST00000389856 ARL13BQ3SXY8 428 aa18.92■□□□□ 0.62
CCDC88C-203ENST00000389856 SH3PXD2AQ5TCZ1 1133 aa18.92■□□□□ 0.62
CCDC88C-203ENST00000389856 PSRC1Q6PGN9 363 aaPredicted RBP18.92■□□□□ 0.62
CCDC88C-203ENST00000389856 GPRIN1Q7Z2K8 1008 aa18.92■□□□□ 0.62
CCDC88C-203ENST00000389856 RFX6Q8HWS3 928 aa18.92■□□□□ 0.62
CCDC88C-203ENST00000389856 NUP93Q8N1F7 819 aa18.92■□□□□ 0.62
CCDC88C-203ENST00000389856 C1orf54Q8WWF1 131 aa18.92■□□□□ 0.62
CCDC88C-203ENST00000389856 VWCEQ96DN2 955 aa18.92■□□□□ 0.62
CCDC88C-203ENST00000389856 PGAP3Q96FM1 320 aaPredicted RBP18.92■□□□□ 0.62
CCDC88C-203ENST00000389856 PABPC3Q9H361 631 aaKnown RBP18.92■□□□□ 0.62
CCDC88C-203ENST00000389856 ABCC13Q9NSE7 274 aa18.92■□□□□ 0.62
CCDC88C-203ENST00000389856 SPG21Q9NZD8 308 aa18.92■□□□□ 0.62
CCDC88C-203ENST00000389856 RCOR3Q9P2K3 495 aaPredicted RBP18.92■□□□□ 0.62
CCDC88C-203ENST00000389856 MTRRQ9UBK8 725 aa18.92■□□□□ 0.62
CCDC88C-203ENST00000389856 M0QYT0 321 aa18.92■□□□□ 0.62
CCDC88C-203ENST00000389856 SOD2P04179 222 aa18.92■□□□□ 0.62
CCDC88C-203ENST00000389856 ITGB8P26012 769 aa18.92■□□□□ 0.62
CCDC88C-203ENST00000389856 ZNF135P52742 658 aaPredicted RBP18.92■□□□□ 0.62
CCDC88C-203ENST00000389856 CREMQ03060 361 aa18.92■□□□□ 0.62
CCDC88C-203ENST00000389856 CAV1Q03135 178 aa18.92■□□□□ 0.62
CCDC88C-203ENST00000389856 PSMD5Q16401 504 aa18.92■□□□□ 0.62
CCDC88C-203ENST00000389856 RTP2Q5QGT7 225 aa18.92■□□□□ 0.62
CCDC88C-203ENST00000389856 UBE2Q1Q7Z7E8 422 aa18.92■□□□□ 0.62
CCDC88C-203ENST00000389856 SPATS2Q86XZ4 545 aaKnown RBP18.92■□□□□ 0.62
CCDC88C-203ENST00000389856 ACSF2Q96CM8 615 aaPredicted RBP18.92■□□□□ 0.62
CCDC88C-203ENST00000389856 CCDC114Q96M63 670 aa18.92■□□□□ 0.62
CCDC88C-203ENST00000389856 PEBP4Q96S96 227 aa18.92■□□□□ 0.62
CCDC88C-203ENST00000389856 SNRNP25Q9BV90 132 aaKnown RBP18.92■□□□□ 0.62
CCDC88C-203ENST00000389856 TMEM109Q9BVC6 243 aa18.92■□□□□ 0.62
Retrieved 100 of 20,778 RNA–protein pairs in 19.8 ms