RNA–Protein interactions for RNA: ENST00000373720.3

SNRNP40-202, Transcript of small nuclear ribonucleoprotein U5 subunit 40, humanhuman

TSL 1 (best) BASIC

Gene SNRNP40, Length 1,087 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNRNP40-202ENST00000373720 TTC30AQ86WT1 665 aa9.06□□□□□ -0.96
SNRNP40-202ENST00000373720 CDR2LQ86X02 465 aaPredicted RBP9.06□□□□□ -0.96
SNRNP40-202ENST00000373720 TRIM42Q8IWZ5 723 aa9.06□□□□□ -0.96
SNRNP40-202ENST00000373720 VPS52Q8N1B4 723 aa9.06□□□□□ -0.96
SNRNP40-202ENST00000373720 SIX6OS1Q8N1H7 587 aa9.06□□□□□ -0.96
SNRNP40-202ENST00000373720 CCDC197Q8NCU1 140 aa9.06□□□□□ -0.96
SNRNP40-202ENST00000373720 SMG8Q8ND04 991 aaKnown RBP9.06□□□□□ -0.96
SNRNP40-202ENST00000373720 OR2W6PQ8NHA6 318 aa9.06□□□□□ -0.96
SNRNP40-202ENST00000373720 UBA3Q8TBC4 463 aa9.06□□□□□ -0.96
SNRNP40-202ENST00000373720 ZNF398Q8TD17 642 aa9.06□□□□□ -0.96
SNRNP40-202ENST00000373720 DYDC1Q8WWB3 177 aa9.06□□□□□ -0.96
SNRNP40-202ENST00000373720 WNT2BQ93097 391 aa9.06□□□□□ -0.96
SNRNP40-202ENST00000373720 SLC2A13Q96QE2 648 aa9.06□□□□□ -0.96
SNRNP40-202ENST00000373720 MRPL45Q9BRJ2 306 aaKnown RBP9.06□□□□□ -0.96
SNRNP40-202ENST00000373720 PLEKHA4Q9H4M7 779 aa9.06□□□□□ -0.96
SNRNP40-202ENST00000373720 PCDH18Q9HCL0 1135 aa9.06□□□□□ -0.96
SNRNP40-202ENST00000373720 CSNK1G1Q9HCP0 422 aa9.06□□□□□ -0.96
SNRNP40-202ENST00000373720 SAYSD1Q9NPB0 183 aa9.06□□□□□ -0.96
SNRNP40-202ENST00000373720 NAALADL1Q9UQQ1 740 aa9.06□□□□□ -0.96
SNRNP40-202ENST00000373720 FAM169AQ9Y6X4 670 aa9.06□□□□□ -0.96
SNRNP40-202ENST00000373720 RASA4BC9J798 803 aa9.05□□□□□ -0.96
SNRNP40-202ENST00000373720 H7C0C1 242 aa9.05□□□□□ -0.96
SNRNP40-202ENST00000373720 TMEM189-UBE2V1I3L0A0 370 aa9.05□□□□□ -0.96
SNRNP40-202ENST00000373720 RASA4O43374 803 aa9.05□□□□□ -0.96
SNRNP40-202ENST00000373720 HNRNPCL1O60812 293 aaKnown RBP9.05□□□□□ -0.96
SNRNP40-202ENST00000373720 OPHN1O60890 802 aa9.05□□□□□ -0.96
SNRNP40-202ENST00000373720 KRT37O76014 449 aa9.05□□□□□ -0.96
SNRNP40-202ENST00000373720 SUN1O94901 812 aa9.05□□□□□ -0.96
SNRNP40-202ENST00000373720 PARNO95453 639 aaKnown RBP9.05□□□□□ -0.96
SNRNP40-202ENST00000373720 ACSL3O95573 720 aa9.05□□□□□ -0.96
SNRNP40-202ENST00000373720 CPP00450 1065 aa9.05□□□□□ -0.96
SNRNP40-202ENST00000373720 IFNB1P01574 187 aa9.05□□□□□ -0.96
SNRNP40-202ENST00000373720 SHBGP04278 402 aa9.05□□□□□ -0.96
SNRNP40-202ENST00000373720 CYP2B6P20813 491 aa9.05□□□□□ -0.96
SNRNP40-202ENST00000373720 L1CAMP32004 1257 aa9.05□□□□□ -0.96
SNRNP40-202ENST00000373720 RPL22P35268 128 aaKnown RBP9.05□□□□□ -0.96
SNRNP40-202ENST00000373720 GJC1P36383 396 aa9.05□□□□□ -0.96
SNRNP40-202ENST00000373720 ATP5OP48047 213 aa9.05□□□□□ -0.96
SNRNP40-202ENST00000373720 GLUD2P49448 558 aa9.05□□□□□ -0.96
SNRNP40-202ENST00000373720 SERPINB9P50453 376 aa9.05□□□□□ -0.96
SNRNP40-202ENST00000373720 SLC20A2Q08357 652 aa9.05□□□□□ -0.96
SNRNP40-202ENST00000373720 PDIA2Q13087 525 aaKnown RBP9.05□□□□□ -0.96
SNRNP40-202ENST00000373720 SPARCL1Q14515 664 aa9.05□□□□□ -0.96
SNRNP40-202ENST00000373720 ATP13A4Q4VNC1 1196 aa9.05□□□□□ -0.96
SNRNP40-202ENST00000373720 RAB41Q5JT25 222 aa9.05□□□□□ -0.96
SNRNP40-202ENST00000373720 STXBP5Q5T5C0 1151 aa9.05□□□□□ -0.96
SNRNP40-202ENST00000373720 NUGGCQ68CJ6 796 aa9.05□□□□□ -0.96
SNRNP40-202ENST00000373720 C6orf89Q6UWU4 347 aa9.05□□□□□ -0.96
SNRNP40-202ENST00000373720 C4orf50Q6ZRC1 276 aa9.05□□□□□ -0.96
SNRNP40-202ENST00000373720 CCDC121Q6ZUS5 278 aa9.05□□□□□ -0.96
SNRNP40-202ENST00000373720 FAM228AQ86W67 206 aa9.05□□□□□ -0.96
SNRNP40-202ENST00000373720 SCUBE3Q8IX30 993 aa9.05□□□□□ -0.96
SNRNP40-202ENST00000373720 CCDC13Q8IYE1 715 aa9.05□□□□□ -0.96
SNRNP40-202ENST00000373720 LZTR1Q8N653 840 aa9.05□□□□□ -0.96
SNRNP40-202ENST00000373720 KLHDC9Q8NEP7 349 aa9.05□□□□□ -0.96
SNRNP40-202ENST00000373720 RAB3IL1Q8TBN0 382 aa9.05□□□□□ -0.96
SNRNP40-202ENST00000373720 PXYLP1Q8TE99 480 aa9.05□□□□□ -0.96
SNRNP40-202ENST00000373720 CKAP2Q8WWK9 683 aa9.05□□□□□ -0.96
SNRNP40-202ENST00000373720 CPT1BQ92523 772 aa9.05□□□□□ -0.96
SNRNP40-202ENST00000373720 MAML1Q92585 1016 aa9.05□□□□□ -0.96
SNRNP40-202ENST00000373720 HSPH1Q92598 858 aa9.05□□□□□ -0.96
SNRNP40-202ENST00000373720 WNT8BQ93098 351 aa9.05□□□□□ -0.96
SNRNP40-202ENST00000373720 SMARCD1Q96GM5 515 aa9.05□□□□□ -0.96
SNRNP40-202ENST00000373720 ZNF317Q96PQ6 595 aaPredicted RBP9.05□□□□□ -0.96
SNRNP40-202ENST00000373720 HERPUD2Q9BSE4 406 aa9.05□□□□□ -0.96
SNRNP40-202ENST00000373720 TMEM121Q9BTD3 319 aa9.05□□□□□ -0.96
SNRNP40-202ENST00000373720 DHRS4Q9BTZ2 278 aa9.05□□□□□ -0.96
SNRNP40-202ENST00000373720 TUBB6Q9BUF5 446 aa9.05□□□□□ -0.96
SNRNP40-202ENST00000373720 VPS11Q9H270 941 aa9.05□□□□□ -0.96
SNRNP40-202ENST00000373720 NXF3Q9H4D5 531 aaKnown RBP9.05□□□□□ -0.96
SNRNP40-202ENST00000373720 NRDE2Q9H7Z3 1164 aa9.05□□□□□ -0.96
SNRNP40-202ENST00000373720 LRRC4CQ9HCJ2 640 aa9.05□□□□□ -0.96
SNRNP40-202ENST00000373720 NGRNQ9NPE2 291 aaKnown RBP9.05□□□□□ -0.96
SNRNP40-202ENST00000373720 PPANQ9NQ55 473 aaKnown RBP9.05□□□□□ -0.96
SNRNP40-202ENST00000373720 COMMD8Q9NX08 183 aa9.05□□□□□ -0.96
SNRNP40-202ENST00000373720 FLRT1Q9NZU1 646 aa9.05□□□□□ -0.96
SNRNP40-202ENST00000373720 TUBGCP4Q9UGJ1 667 aa9.05□□□□□ -0.96
SNRNP40-202ENST00000373720 XPO7Q9UIA9 1087 aaKnown RBP9.05□□□□□ -0.96
SNRNP40-202ENST00000373720 TRHDEQ9UKU6 1024 aa9.05□□□□□ -0.96
SNRNP40-202ENST00000373720 ST3GAL5Q9UNP4 418 aa9.05□□□□□ -0.96
SNRNP40-202ENST00000373720 GINS2Q9Y248 185 aa9.05□□□□□ -0.96
SNRNP40-202ENST00000373720 M0QZQ0 153 aa9.04□□□□□ -0.96
SNRNP40-202ENST00000373720 MYO1CO00159 1063 aa9.04□□□□□ -0.96
SNRNP40-202ENST00000373720 CSDE1O75534 798 aaKnown RBP9.04□□□□□ -0.96
SNRNP40-202ENST00000373720 KRT38O76015 456 aa9.04□□□□□ -0.96
SNRNP40-202ENST00000373720 FSBPO95073 299 aa9.04□□□□□ -0.96
SNRNP40-202ENST00000373720 CALCAP01258 141 aa9.04□□□□□ -0.96
SNRNP40-202ENST00000373720 IL1BP01584 269 aa9.04□□□□□ -0.96
SNRNP40-202ENST00000373720 IL4RP24394 825 aa9.04□□□□□ -0.96
SNRNP40-202ENST00000373720 ALDH3A1P30838 453 aa9.04□□□□□ -0.96
SNRNP40-202ENST00000373720 CHKAP35790 457 aa9.04□□□□□ -0.96
SNRNP40-202ENST00000373720 SKIV2L2P42285 1042 aaKnown RBP9.04□□□□□ -0.96
SNRNP40-202ENST00000373720 MSH2P43246 934 aa9.04□□□□□ -0.96
SNRNP40-202ENST00000373720 HDAC4P56524 1084 aa9.04□□□□□ -0.96
SNRNP40-202ENST00000373720 COG7P83436 770 aa9.04□□□□□ -0.96
SNRNP40-202ENST00000373720 CDK18Q07002 472 aa9.04□□□□□ -0.96
SNRNP40-202ENST00000373720 MGAT3Q09327 533 aa9.04□□□□□ -0.96
SNRNP40-202ENST00000373720 CCDC15Q0P6D6 951 aa9.04□□□□□ -0.96
SNRNP40-202ENST00000373720 TUSC3Q13454 348 aa9.04□□□□□ -0.96
SNRNP40-202ENST00000373720 SEMA5AQ13591 1074 aa9.04□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 26.2 ms