RNA–Protein interactions for RNA: ENST00000372407.4

PTPRF-203, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 2

Gene PTPRF, Length 4,600 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-203ENST00000372407 CLPTM1O96005 669 aa11.77□□□□□ -0.53
PTPRF-203ENST00000372407 CETPP11597 493 aa11.77□□□□□ -0.53
PTPRF-203ENST00000372407 PECAM1P16284 738 aaPredicted RBP11.77□□□□□ -0.53
PTPRF-203ENST00000372407 MIB1Q86YT6 1006 aa11.77□□□□□ -0.53
PTPRF-203ENST00000372407 DDHD1Q8NEL9 900 aa11.77□□□□□ -0.53
PTPRF-203ENST00000372407 NUDT12Q9BQG2 462 aa11.77□□□□□ -0.53
PTPRF-203ENST00000372407 AGO4Q9HCK5 861 aaKnown RBP11.77□□□□□ -0.53
PTPRF-203ENST00000372407 MPP6Q9NZW5 540 aa11.77□□□□□ -0.53
PTPRF-203ENST00000372407 PCDHGC5Q9Y5F6 944 aa11.77□□□□□ -0.53
PTPRF-203ENST00000372407 GP5P40197 560 aa11.76□□□□□ -0.53
PTPRF-203ENST00000372407 ALDH1A3P47895 512 aa11.76□□□□□ -0.53
PTPRF-203ENST00000372407 PRIM2P49643 509 aa11.76□□□□□ -0.53
PTPRF-203ENST00000372407 CPT1AP50416 773 aa11.76□□□□□ -0.53
PTPRF-203ENST00000372407 SREBF2Q12772 1141 aa11.76□□□□□ -0.53
PTPRF-203ENST00000372407 ZNF268Q14587 947 aaPredicted RBP11.76□□□□□ -0.53
PTPRF-203ENST00000372407 WASHC2DQ5SRD0 308 aa11.76□□□□□ -0.53
PTPRF-203ENST00000372407 TDRD10Q5VZ19 366 aaKnown RBP11.76□□□□□ -0.53
PTPRF-203ENST00000372407 IZUMO2Q6UXV1 221 aa11.76□□□□□ -0.53
PTPRF-203ENST00000372407 CCDC81Q6ZN84 652 aa11.76□□□□□ -0.53
PTPRF-203ENST00000372407 ZBTB49Q6ZSB9 765 aa11.76□□□□□ -0.53
PTPRF-203ENST00000372407 CYP2W1Q8TAV3 490 aa11.76□□□□□ -0.53
PTPRF-203ENST00000372407 TCP10LQ8TDR4 215 aa11.76□□□□□ -0.53
PTPRF-203ENST00000372407 ABHD8Q96I13 439 aa11.76□□□□□ -0.53
PTPRF-203ENST00000372407 TUBGCP4Q9UGJ1 667 aa11.76□□□□□ -0.53
PTPRF-203ENST00000372407 FAM237AA0A1B0GTK4 181 aa11.76□□□□□ -0.53
PTPRF-203ENST00000372407 F8W810 466 aa11.76□□□□□ -0.53
PTPRF-203ENST00000372407 CYB561D2O14569 222 aa11.76□□□□□ -0.53
PTPRF-203ENST00000372407 ATP6V1G2O95670 118 aa11.76□□□□□ -0.53
PTPRF-203ENST00000372407 AVPR1AP37288 418 aa11.76□□□□□ -0.53
PTPRF-203ENST00000372407 IFI35P80217 286 aaPredicted RBP11.76□□□□□ -0.53
PTPRF-203ENST00000372407 MMRN1Q13201 1228 aa11.76□□□□□ -0.53
PTPRF-203ENST00000372407 PPP4R4Q6NUP7 873 aa11.76□□□□□ -0.53
PTPRF-203ENST00000372407 CCDC33Q8N5R6 958 aa11.76□□□□□ -0.53
PTPRF-203ENST00000372407 COLGALT1Q8NBJ5 622 aa11.76□□□□□ -0.53
PTPRF-203ENST00000372407 ZKSCAN4Q969J2 545 aaPredicted RBP11.76□□□□□ -0.53
PTPRF-203ENST00000372407 GPAMQ9HCL2 828 aa11.76□□□□□ -0.53
PTPRF-203ENST00000372407 MAGEB16A2A368 324 aa11.76□□□□□ -0.53
PTPRF-203ENST00000372407 FCHO1O14526 889 aa11.76□□□□□ -0.53
PTPRF-203ENST00000372407 SLITRK3O94933 977 aa11.76□□□□□ -0.53
PTPRF-203ENST00000372407 UPP2O95045 317 aa11.76□□□□□ -0.53
PTPRF-203ENST00000372407 TFRCP02786 760 aaKnown RBP11.76□□□□□ -0.53
PTPRF-203ENST00000372407 DDX39BQ13838 428 aaKnown RBP11.76□□□□□ -0.53
PTPRF-203ENST00000372407 HIST2H2ACQ16777 129 aaPredicted RBP11.76□□□□□ -0.53
PTPRF-203ENST00000372407 TRIM16LQ309B1 348 aa11.76□□□□□ -0.53
PTPRF-203ENST00000372407 HIST2H2AA3Q6FI13 130 aa11.76□□□□□ -0.53
PTPRF-203ENST00000372407 IYDQ6PHW0 289 aa11.76□□□□□ -0.53
PTPRF-203ENST00000372407 TCF7L2Q9NQB0 619 aa11.76□□□□□ -0.53
PTPRF-203ENST00000372407 PXMP2Q9NR77 195 aa11.76□□□□□ -0.53
PTPRF-203ENST00000372407 ITM2BQ9Y287 266 aa11.76□□□□□ -0.53
PTPRF-203ENST00000372407 MAP2K7O14733 419 aa11.75□□□□□ -0.53
PTPRF-203ENST00000372407 STRNO43815 780 aa11.75□□□□□ -0.53
PTPRF-203ENST00000372407 IRF1P10914 325 aa11.75□□□□□ -0.53
PTPRF-203ENST00000372407 SSTR1P30872 391 aa11.75□□□□□ -0.53
PTPRF-203ENST00000372407 NFYCQ13952 458 aa11.75□□□□□ -0.53
PTPRF-203ENST00000372407 FUT11Q495W5 492 aa11.75□□□□□ -0.53
PTPRF-203ENST00000372407 MFSD7Q6UXD7 560 aa11.75□□□□□ -0.53
PTPRF-203ENST00000372407 PLEKHM3Q6ZWE6 761 aa11.75□□□□□ -0.53
PTPRF-203ENST00000372407 OTOP1Q7RTM1 612 aa11.75□□□□□ -0.53
PTPRF-203ENST00000372407 DEFB107AQ8IZN7 70 aa11.75□□□□□ -0.53
PTPRF-203ENST00000372407 KYQ8NBH2 561 aa11.75□□□□□ -0.53
PTPRF-203ENST00000372407 RIN3Q8TB24 985 aa11.75□□□□□ -0.53
PTPRF-203ENST00000372407 SEPT8Q92599 483 aa11.75□□□□□ -0.53
PTPRF-203ENST00000372407 TADA1Q96BN2 335 aa11.75□□□□□ -0.53
PTPRF-203ENST00000372407 KLHL4Q9C0H6 718 aa11.75□□□□□ -0.53
PTPRF-203ENST00000372407 ZFYVE28Q9HCC9 887 aa11.75□□□□□ -0.53
PTPRF-203ENST00000372407 GDF3Q9NR23 364 aa11.75□□□□□ -0.53
PTPRF-203ENST00000372407 KCND1Q9NSA2 647 aa11.75□□□□□ -0.53
PTPRF-203ENST00000372407 INTS13Q9NVM9 706 aa11.75□□□□□ -0.53
PTPRF-203ENST00000372407 NMRK1Q9NWW6 199 aa11.75□□□□□ -0.53
PTPRF-203ENST00000372407 SERPINE1P05121 402 aa11.75□□□□□ -0.53
PTPRF-203ENST00000372407 PLIN5Q00G26 463 aa11.75□□□□□ -0.53
PTPRF-203ENST00000372407 PRKAA1Q13131 559 aa11.75□□□□□ -0.53
PTPRF-203ENST00000372407 CDH18Q13634 790 aa11.75□□□□□ -0.53
PTPRF-203ENST00000372407 ITGA9Q13797 1035 aa11.75□□□□□ -0.53
PTPRF-203ENST00000372407 SLC44A4Q53GD3 710 aa11.75□□□□□ -0.53
PTPRF-203ENST00000372407 AGKQ53H12 422 aa11.75□□□□□ -0.53
PTPRF-203ENST00000372407 METTL7BQ6UX53 244 aa11.75□□□□□ -0.53
PTPRF-203ENST00000372407 YAF2Q8IY57 180 aa11.75□□□□□ -0.53
PTPRF-203ENST00000372407 GLT1D1Q96MS3 346 aa11.75□□□□□ -0.53
PTPRF-203ENST00000372407 SPATA16Q9BXB7 569 aa11.75□□□□□ -0.53
PTPRF-203ENST00000372407 ZCWPW1Q9H0M4 648 aa11.75□□□□□ -0.53
PTPRF-203ENST00000372407 NINJ2Q9NZG7 142 aa11.75□□□□□ -0.53
PTPRF-203ENST00000372407 RAD54BQ9Y620 910 aa11.75□□□□□ -0.53
PTPRF-203ENST00000372407 TRIM13O60858 407 aa11.75□□□□□ -0.53
PTPRF-203ENST00000372407 TGFB3P10600 412 aa11.75□□□□□ -0.53
PTPRF-203ENST00000372407 CYP2F1P24903 491 aa11.75□□□□□ -0.53
PTPRF-203ENST00000372407 PRKCIP41743 596 aa11.75□□□□□ -0.53
PTPRF-203ENST00000372407 BST2Q10589 180 aaKnown RBP11.75□□□□□ -0.53
PTPRF-203ENST00000372407 SNX30Q5VWJ9 437 aa11.75□□□□□ -0.53
PTPRF-203ENST00000372407 PDPK2PQ6A1A2 396 aa11.75□□□□□ -0.53
PTPRF-203ENST00000372407 LRRC8DQ7L1W4 858 aa11.75□□□□□ -0.53
PTPRF-203ENST00000372407 ADGRF2Q8IZF7 708 aa11.75□□□□□ -0.53
PTPRF-203ENST00000372407 L3MBTL3Q96JM7 780 aaPredicted RBP11.75□□□□□ -0.53
PTPRF-203ENST00000372407 SH3GL1Q99961 368 aa11.75□□□□□ -0.53
PTPRF-203ENST00000372407 SOAT1P35610 550 aa11.75□□□□□ -0.53
PTPRF-203ENST00000372407 RAD23AP54725 363 aa11.75□□□□□ -0.53
PTPRF-203ENST00000372407 CSE1LP55060 971 aaKnown RBP11.75□□□□□ -0.53
PTPRF-203ENST00000372407 SPDYCQ5MJ68 293 aa11.75□□□□□ -0.53
PTPRF-203ENST00000372407 MROH8Q9H579 483 aa11.75□□□□□ -0.53
PTPRF-203ENST00000372407 THAP1Q9NVV9 213 aa11.75□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 30.6 ms