RNA–Protein interactions for RNA: ENST00000360280.7

VPS13A-203, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene VPS13A, Length 15,320 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-203ENST00000360280 HIRAP54198 1017 aaPredicted RBP9.55□□□□□ -0.88
VPS13A-203ENST00000360280 KCNB2Q92953 911 aa9.55□□□□□ -0.88
VPS13A-203ENST00000360280 NACC2Q96BF6 587 aa9.55□□□□□ -0.88
VPS13A-203ENST00000360280 CACNA1FO60840 1977 aa9.55□□□□□ -0.88
VPS13A-203ENST00000360280 TRPM1Q7Z4N2 1603 aa9.55□□□□□ -0.88
VPS13A-203ENST00000360280 SDR42E2A6NKP2 422 aa9.55□□□□□ -0.88
VPS13A-203ENST00000360280 KHDRBS3O75525 346 aaKnown RBP9.55□□□□□ -0.88
VPS13A-203ENST00000360280 DDX39BQ13838 428 aaKnown RBP9.55□□□□□ -0.88
VPS13A-203ENST00000360280 DHFR2Q86XF0 187 aa9.55□□□□□ -0.88
VPS13A-203ENST00000360280 FAM172AQ8WUF8 416 aa9.55□□□□□ -0.88
VPS13A-203ENST00000360280 DYNLL2Q96FJ2 89 aa9.55□□□□□ -0.88
VPS13A-203ENST00000360280 TET3O43151 1660 aa9.55□□□□□ -0.88
VPS13A-203ENST00000360280 C15orf38-AP3S2A0A0A6YYH1 394 aa9.55□□□□□ -0.88
VPS13A-203ENST00000360280 PTSQ03393 145 aa9.55□□□□□ -0.88
VPS13A-203ENST00000360280 NFIAQ12857 509 aa9.55□□□□□ -0.88
VPS13A-203ENST00000360280 GRM4Q14833 912 aa9.55□□□□□ -0.88
VPS13A-203ENST00000360280 ARPINQ7Z6K5 226 aa9.55□□□□□ -0.88
VPS13A-203ENST00000360280 RFT1Q96AA3 541 aa9.55□□□□□ -0.88
VPS13A-203ENST00000360280 REPS1Q96D71 796 aa9.55□□□□□ -0.88
VPS13A-203ENST00000360280 SH3BP1Q9Y3L3 701 aa9.55□□□□□ -0.88
VPS13A-203ENST00000360280 MYH13Q9UKX3 1938 aa9.55□□□□□ -0.88
VPS13A-203ENST00000360280 LOC100506127A0A0U1RQW1 187 aa9.55□□□□□ -0.88
VPS13A-203ENST00000360280 MTTPP55157 894 aa9.55□□□□□ -0.88
VPS13A-203ENST00000360280 SAMD4BQ5PRF9 694 aaKnown RBP9.55□□□□□ -0.88
VPS13A-203ENST00000360280 ADHFE1Q8IWW8 467 aa9.55□□□□□ -0.88
VPS13A-203ENST00000360280 FAM71DQ8N9W8 422 aa9.55□□□□□ -0.88
VPS13A-203ENST00000360280 SPIRE2Q8WWL2 714 aa9.55□□□□□ -0.88
VPS13A-203ENST00000360280 WDR12Q9GZL7 423 aaKnown RBP9.55□□□□□ -0.88
VPS13A-203ENST00000360280 TCF7L2Q9NQB0 619 aa9.55□□□□□ -0.88
VPS13A-203ENST00000360280 RRN3Q9NYV6 651 aa9.55□□□□□ -0.88
VPS13A-203ENST00000360280 PRRG1O14668 218 aa9.55□□□□□ -0.88
VPS13A-203ENST00000360280 DGAT1O75907 488 aa9.55□□□□□ -0.88
VPS13A-203ENST00000360280 PCNAP12004 261 aa9.55□□□□□ -0.88
VPS13A-203ENST00000360280 ADAMTS12P58397 1594 aa9.55□□□□□ -0.88
VPS13A-203ENST00000360280 SRP54P61011 504 aaKnown RBP9.55□□□□□ -0.88
VPS13A-203ENST00000360280 ITGADQ13349 1161 aa9.55□□□□□ -0.88
VPS13A-203ENST00000360280 CELF4Q9BZC1 486 aaKnown RBP9.55□□□□□ -0.88
VPS13A-203ENST00000360280 GANQ9H2C0 597 aa9.55□□□□□ -0.88
VPS13A-203ENST00000360280 AHSPQ9NZD4 102 aa9.55□□□□□ -0.88
VPS13A-203ENST00000360280 INPP4BO15327 924 aa9.55□□□□□ -0.88
VPS13A-203ENST00000360280 DSG3P32926 999 aa9.55□□□□□ -0.88
VPS13A-203ENST00000360280 GRIK3Q13003 919 aa9.55□□□□□ -0.88
VPS13A-203ENST00000360280 PHACTR4Q8IZ21 702 aa9.55□□□□□ -0.88
VPS13A-203ENST00000360280 SAMD3Q8N6K7 520 aa9.55□□□□□ -0.88
VPS13A-203ENST00000360280 KBTBD8Q8NFY9 601 aa9.55□□□□□ -0.88
VPS13A-203ENST00000360280 FAM49BQ9NUQ9 324 aa9.55□□□□□ -0.88
VPS13A-203ENST00000360280 TMEM253P0C7T8 217 aa9.55□□□□□ -0.88
VPS13A-203ENST00000360280 PRKAA2P54646 552 aa9.55□□□□□ -0.88
VPS13A-203ENST00000360280 FAM228AQ86W67 206 aa9.55□□□□□ -0.88
VPS13A-203ENST00000360280 FIG4Q92562 907 aa9.55□□□□□ -0.88
VPS13A-203ENST00000360280 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP9.55□□□□□ -0.88
VPS13A-203ENST00000360280 PRKAG3Q9UGI9 489 aa9.55□□□□□ -0.88
VPS13A-203ENST00000360280 CLOCKO15516 846 aa9.54□□□□□ -0.88
VPS13A-203ENST00000360280 CYP2E1P05181 493 aaPredicted RBP9.54□□□□□ -0.88
VPS13A-203ENST00000360280 ARHGEF19Q8IW93 802 aa9.54□□□□□ -0.88
VPS13A-203ENST00000360280 SERAC1Q96JX3 654 aa9.54□□□□□ -0.88
VPS13A-203ENST00000360280 STX16-NPEPL1H3BU86 382 aa9.54□□□□□ -0.88
VPS13A-203ENST00000360280 STX16O14662 325 aa9.54□□□□□ -0.88
VPS13A-203ENST00000360280 SEMA3DO95025 777 aa9.54□□□□□ -0.88
VPS13A-203ENST00000360280 CRTAMO95727 393 aa9.54□□□□□ -0.88
VPS13A-203ENST00000360280 PIK3C3Q8NEB9 887 aa9.54□□□□□ -0.88
VPS13A-203ENST00000360280 DGCR14Q96DF8 476 aaKnown RBP9.54□□□□□ -0.88
VPS13A-203ENST00000360280 JMJD4Q9H9V9 463 aa9.54□□□□□ -0.88
VPS13A-203ENST00000360280 LY9Q9HBG7 655 aa9.54□□□□□ -0.88
VPS13A-203ENST00000360280 CHORDC1Q9UHD1 332 aaPredicted RBP9.54□□□□□ -0.88
VPS13A-203ENST00000360280 CACNB2Q08289 660 aaPredicted RBP9.54□□□□□ -0.88
VPS13A-203ENST00000360280 NCOA4Q13772 614 aa9.54□□□□□ -0.88
VPS13A-203ENST00000360280 TOB2Q14106 344 aaPredicted RBP9.54□□□□□ -0.88
VPS13A-203ENST00000360280 ZNF222Q9UK12 451 aa9.54□□□□□ -0.88
VPS13A-203ENST00000360280 OSBP2Q969R2 916 aa9.54□□□□□ -0.88
VPS13A-203ENST00000360280 TPD52L3Q96J77 140 aa9.54□□□□□ -0.88
VPS13A-203ENST00000360280 AIFM3Q96NN9 605 aa9.54□□□□□ -0.88
VPS13A-203ENST00000360280 SLITRK1Q96PX8 696 aa9.54□□□□□ -0.88
VPS13A-203ENST00000360280 CLCC1Q96S66 551 aa9.54□□□□□ -0.88
VPS13A-203ENST00000360280 MGAT4AQ9UM21 535 aa9.54□□□□□ -0.88
VPS13A-203ENST00000360280 LRRC14BA6NHZ5 514 aa9.54□□□□□ -0.88
VPS13A-203ENST00000360280 CDH18Q13634 790 aa9.54□□□□□ -0.88
VPS13A-203ENST00000360280 SMTNL2Q2TAL5 461 aa9.54□□□□□ -0.88
VPS13A-203ENST00000360280 TCHHL1Q5QJ38 904 aaPredicted RBP9.54□□□□□ -0.88
VPS13A-203ENST00000360280 KCTD17Q8N5Z5 321 aa9.54□□□□□ -0.88
VPS13A-203ENST00000360280 COX4I2Q96KJ9 171 aa9.54□□□□□ -0.88
VPS13A-203ENST00000360280 CCSER1Q9C0I3 900 aa9.54□□□□□ -0.88
VPS13A-203ENST00000360280 CHKBQ9Y259 395 aa9.54□□□□□ -0.88
VPS13A-203ENST00000360280 GSAPA4D1B5 854 aa9.54□□□□□ -0.88
VPS13A-203ENST00000360280 HAT1O14929 419 aa9.54□□□□□ -0.88
VPS13A-203ENST00000360280 CST8O60676 142 aa9.54□□□□□ -0.88
VPS13A-203ENST00000360280 TPBGLP0DKB5 382 aa9.54□□□□□ -0.88
VPS13A-203ENST00000360280 CYP2C8P10632 490 aa9.54□□□□□ -0.88
VPS13A-203ENST00000360280 CDH3P22223 829 aa9.54□□□□□ -0.88
VPS13A-203ENST00000360280 TMPRSS6Q8IU80 811 aa9.54□□□□□ -0.88
VPS13A-203ENST00000360280 SCUBE2Q9NQ36 999 aa9.54□□□□□ -0.88
VPS13A-203ENST00000360280 BSDC1Q9NW68 430 aaPredicted RBP9.54□□□□□ -0.88
VPS13A-203ENST00000360280 ITGA3P26006 1051 aa9.54□□□□□ -0.88
VPS13A-203ENST00000360280 BST2Q10589 180 aaKnown RBP9.54□□□□□ -0.88
VPS13A-203ENST00000360280 NR1I3Q14994 352 aa9.54□□□□□ -0.88
VPS13A-203ENST00000360280 AADATQ8N5Z0 425 aa9.54□□□□□ -0.88
VPS13A-203ENST00000360280 POP5Q969H6 163 aaKnown RBP9.54□□□□□ -0.88
VPS13A-203ENST00000360280 SEPHS2Q99611 448 aa9.54□□□□□ -0.88
VPS13A-203ENST00000360280 C7orf25Q9BPX7 421 aa9.54□□□□□ -0.88
VPS13A-203ENST00000360280 HS6ST1O60243 411 aa9.54□□□□□ -0.88
Retrieved 100 of 20,778 RNA–protein pairs in 28.9 ms