RNA–Protein interactions for RNA: ENST00000353578.8

COL6A3-203, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 5 BASIC

Gene COL6A3, Length 9,963 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-203ENST00000353578 THRBP10828 461 aa12.95□□□□□ -0.34
COL6A3-203ENST00000353578 PTGES3Q15185 160 aaKnown RBP12.95□□□□□ -0.34
COL6A3-203ENST00000353578 SNRNP48Q6IEG0 339 aaKnown RBP12.95□□□□□ -0.34
COL6A3-203ENST00000353578 ZNF280DQ6N043 979 aa12.95□□□□□ -0.34
COL6A3-203ENST00000353578 ERI1Q8IV48 349 aaKnown RBP12.95□□□□□ -0.34
COL6A3-203ENST00000353578 CITED4Q96RK1 184 aa12.95□□□□□ -0.34
COL6A3-203ENST00000353578 SLC52A2Q9HAB3 445 aa12.95□□□□□ -0.34
COL6A3-203ENST00000353578 ECE2O60344 883 aa12.95□□□□□ -0.34
COL6A3-203ENST00000353578 ATG16L2Q8NAA4 619 aa12.95□□□□□ -0.34
COL6A3-203ENST00000353578 CAMSAP3Q9P1Y5 1249 aaPredicted RBP12.95□□□□□ -0.34
COL6A3-203ENST00000353578 TRIM10Q9UDY6 481 aa12.95□□□□□ -0.34
COL6A3-203ENST00000353578 DRG1Q9Y295 367 aaKnown RBP12.95□□□□□ -0.34
COL6A3-203ENST00000353578 ANXA1P04083 346 aa12.95□□□□□ -0.34
COL6A3-203ENST00000353578 NTRK1P04629 796 aa12.95□□□□□ -0.34
COL6A3-203ENST00000353578 GYS1P13807 737 aa12.95□□□□□ -0.34
COL6A3-203ENST00000353578 ACMSDQ8TDX5 336 aa12.95□□□□□ -0.34
COL6A3-203ENST00000353578 CAMKK2Q96RR4 588 aa12.95□□□□□ -0.34
COL6A3-203ENST00000353578 ELOVL6Q9H5J4 265 aa12.95□□□□□ -0.34
COL6A3-203ENST00000353578 SP140LQ9H930 580 aa12.95□□□□□ -0.34
COL6A3-203ENST00000353578 MED11Q9P086 117 aa12.95□□□□□ -0.34
COL6A3-203ENST00000353578 SMNDC1O75940 238 aaKnown RBP eCLIP12.95□□□□□ -0.34
COL6A3-203ENST00000353578 PPP2R1BP30154 601 aa12.95□□□□□ -0.34
COL6A3-203ENST00000353578 DGKKQ5KSL6 1271 aa12.95□□□□□ -0.34
COL6A3-203ENST00000353578 C2orf40Q9H1Z8 148 aa12.95□□□□□ -0.34
COL6A3-203ENST00000353578 CDC42EP4Q9H3Q1 356 aaKnown RBP12.95□□□□□ -0.34
COL6A3-203ENST00000353578 INO80Q9ULG1 1556 aaPredicted RBP12.95□□□□□ -0.34
COL6A3-203ENST00000353578 CLDN3O15551 220 aa12.95□□□□□ -0.34
COL6A3-203ENST00000353578 ZNF211Q13398 564 aaPredicted RBP12.95□□□□□ -0.34
COL6A3-203ENST00000353578 PPM1LQ5SGD2 360 aa12.95□□□□□ -0.34
COL6A3-203ENST00000353578 CKAP2Q8WWK9 683 aa12.95□□□□□ -0.34
COL6A3-203ENST00000353578 PAFAH2Q99487 392 aa12.95□□□□□ -0.34
COL6A3-203ENST00000353578 THUMPD3Q9BV44 507 aaKnown RBP12.95□□□□□ -0.34
COL6A3-203ENST00000353578 NUP50Q9UKX7 468 aa12.95□□□□□ -0.34
COL6A3-203ENST00000353578 ERGIC3Q9Y282 383 aa12.95□□□□□ -0.34
COL6A3-203ENST00000353578 PALLDQ8WX93 1383 aa12.95□□□□□ -0.34
COL6A3-203ENST00000353578 TSPAN19P0C672 248 aa12.95□□□□□ -0.34
COL6A3-203ENST00000353578 TCN1P20061 433 aaPredicted RBP12.95□□□□□ -0.34
COL6A3-203ENST00000353578 USP10Q14694 798 aaKnown RBP12.95□□□□□ -0.34
COL6A3-203ENST00000353578 EIF5AL1Q6IS14 154 aaKnown RBP12.95□□□□□ -0.34
COL6A3-203ENST00000353578 DCAF4Q8WV16 495 aa12.95□□□□□ -0.34
COL6A3-203ENST00000353578 FAR1Q8WVX9 515 aa12.95□□□□□ -0.34
COL6A3-203ENST00000353578 NOL11Q9H8H0 719 aaKnown RBP12.95□□□□□ -0.34
COL6A3-203ENST00000353578 PCDH9Q9HC56 1237 aa12.95□□□□□ -0.34
COL6A3-203ENST00000353578 RAB6BQ9NRW1 208 aa12.95□□□□□ -0.34
COL6A3-203ENST00000353578 TMEM9Q9P0T7 183 aa12.95□□□□□ -0.34
COL6A3-203ENST00000353578 SFI1A8K8P3 1242 aa12.95□□□□□ -0.34
COL6A3-203ENST00000353578 KCNK1O00180 336 aa12.95□□□□□ -0.34
COL6A3-203ENST00000353578 POU4F1Q01851 419 aa12.95□□□□□ -0.34
COL6A3-203ENST00000353578 POLD3Q15054 466 aaPredicted RBP12.95□□□□□ -0.34
COL6A3-203ENST00000353578 TMEM126BQ8IUX1 230 aa12.95□□□□□ -0.34
COL6A3-203ENST00000353578 STAT3P40763 770 aa12.95□□□□□ -0.34
COL6A3-203ENST00000353578 ITGA7Q13683 1181 aa12.95□□□□□ -0.34
COL6A3-203ENST00000353578 C15orf40Q8WUR7 153 aa12.95□□□□□ -0.34
COL6A3-203ENST00000353578 K7ERI5 159 aa12.94□□□□□ -0.34
COL6A3-203ENST00000353578 TEX28O15482 410 aa12.94□□□□□ -0.34
COL6A3-203ENST00000353578 ITGA10O75578 1167 aa12.94□□□□□ -0.34
COL6A3-203ENST00000353578 NFIL3Q16649 462 aa12.94□□□□□ -0.34
COL6A3-203ENST00000353578 MED15Q96RN5 788 aa12.94□□□□□ -0.34
COL6A3-203ENST00000353578 TCEAL7Q9BRU2 100 aa12.94□□□□□ -0.34
COL6A3-203ENST00000353578 SFMBT1Q9UHJ3 866 aa12.94□□□□□ -0.34
COL6A3-203ENST00000353578 ANXA9O76027 345 aa12.94□□□□□ -0.34
COL6A3-203ENST00000353578 CDC42P60953 191 aa12.94□□□□□ -0.34
COL6A3-203ENST00000353578 SUZ12Q15022 739 aaKnown RBP12.94□□□□□ -0.34
COL6A3-203ENST00000353578 PDK4Q16654 411 aa12.94□□□□□ -0.34
COL6A3-203ENST00000353578 TXNDC11Q6PKC3 985 aa12.94□□□□□ -0.34
COL6A3-203ENST00000353578 C18orf8Q96DM3 657 aa12.94□□□□□ -0.34
COL6A3-203ENST00000353578 MGRN1O60291 552 aa12.94□□□□□ -0.34
COL6A3-203ENST00000353578 TGDSO95455 350 aa12.94□□□□□ -0.34
COL6A3-203ENST00000353578 PCCAP05165 728 aaPredicted RBP12.94□□□□□ -0.34
COL6A3-203ENST00000353578 YES1P07947 543 aa12.94□□□□□ -0.34
COL6A3-203ENST00000353578 IDO1P14902 403 aa12.94□□□□□ -0.34
COL6A3-203ENST00000353578 DCAF15Q66K64 600 aa12.94□□□□□ -0.34
COL6A3-203ENST00000353578 DENND1BQ6P3S1 775 aa12.94□□□□□ -0.34
COL6A3-203ENST00000353578 PJA1Q8NG27 643 aa12.94□□□□□ -0.34
COL6A3-203ENST00000353578 MED28Q9H204 178 aa12.94□□□□□ -0.34
COL6A3-203ENST00000353578 KDM6AO15550 1401 aaPredicted RBP12.94□□□□□ -0.34
COL6A3-203ENST00000353578 FAM172BPA6NC97 362 aa12.94□□□□□ -0.34
COL6A3-203ENST00000353578 H7C2Y5 167 aa12.94□□□□□ -0.34
COL6A3-203ENST00000353578 ENO2P09104 434 aaPredicted RBP12.94□□□□□ -0.34
COL6A3-203ENST00000353578 SMIM11AP58511 58 aa12.94□□□□□ -0.34
COL6A3-203ENST00000353578 SPDYAQ5MJ70 313 aa12.94□□□□□ -0.34
COL6A3-203ENST00000353578 G2E3Q7L622 706 aa12.94□□□□□ -0.34
COL6A3-203ENST00000353578 MIER2Q8N344 545 aa12.94□□□□□ -0.34
COL6A3-203ENST00000353578 EEF2KMTQ96G04 330 aa12.94□□□□□ -0.34
COL6A3-203ENST00000353578 TBC1D10AQ9BXI6 508 aa12.94□□□□□ -0.34
COL6A3-203ENST00000353578 CLRN2A0PK11 232 aa12.94□□□□□ -0.34
COL6A3-203ENST00000353578 SLC22A1O15245 554 aa12.94□□□□□ -0.34
COL6A3-203ENST00000353578 RIPK2O43353 540 aa12.94□□□□□ -0.34
COL6A3-203ENST00000353578 GPD2P43304 727 aa12.94□□□□□ -0.34
COL6A3-203ENST00000353578 KRT28Q7Z3Y7 464 aa12.94□□□□□ -0.34
COL6A3-203ENST00000353578 NFATC2IPQ8NCF5 419 aa12.94□□□□□ -0.34
COL6A3-203ENST00000353578 C11orf70Q9BRQ4 267 aa12.94□□□□□ -0.34
COL6A3-203ENST00000353578 ABCB10Q9NRK6 738 aa12.94□□□□□ -0.34
COL6A3-203ENST00000353578 DNAAF2Q9NVR5 837 aaKnown RBP12.94□□□□□ -0.34
COL6A3-203ENST00000353578 CYP2C9P11712 490 aa12.94□□□□□ -0.34
COL6A3-203ENST00000353578 ARHGDIBP52566 201 aa12.94□□□□□ -0.34
COL6A3-203ENST00000353578 GNG2P59768 71 aa12.94□□□□□ -0.34
COL6A3-203ENST00000353578 SMCO1Q147U7 214 aa12.94□□□□□ -0.34
COL6A3-203ENST00000353578 HM13Q8TCT9 377 aa12.94□□□□□ -0.34
COL6A3-203ENST00000353578 GLS2Q9UI32 602 aa12.94□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 68.2 ms