RNA–Protein interactions for RNA: ENST00000341423.9

HMGB1-203, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HMGB1, Length 5,485 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-203ENST00000341423 USB1Q9BQ65 265 aaKnown RBP8.71□□□□□ -1.01
HMGB1-203ENST00000341423 NIF3L1Q9GZT8 377 aa8.71□□□□□ -1.01
HMGB1-203ENST00000341423 TRIT1Q9H3H1 467 aaKnown RBP8.71□□□□□ -1.01
HMGB1-203ENST00000341423 DDX4Q9NQI0 724 aaKnown RBP8.71□□□□□ -1.01
HMGB1-203ENST00000341423 SPTLC3Q9NUV7 552 aa8.71□□□□□ -1.01
HMGB1-203ENST00000341423 NMRK1Q9NWW6 199 aa8.71□□□□□ -1.01
HMGB1-203ENST00000341423 BFARQ9NZS9 450 aa8.71□□□□□ -1.01
HMGB1-203ENST00000341423 TDRKHQ9Y2W6 561 aaKnown RBP8.71□□□□□ -1.01
HMGB1-203ENST00000341423 LRRC53A6NM62 1247 aa8.71□□□□□ -1.01
HMGB1-203ENST00000341423 RASA4BC9J798 803 aa8.71□□□□□ -1.01
HMGB1-203ENST00000341423 RASA4O43374 803 aa8.71□□□□□ -1.01
HMGB1-203ENST00000341423 RAMP2O60895 175 aa8.71□□□□□ -1.01
HMGB1-203ENST00000341423 KRT3P12035 628 aa8.71□□□□□ -1.01
HMGB1-203ENST00000341423 UGT1A1P22309 533 aa8.71□□□□□ -1.01
HMGB1-203ENST00000341423 TRIM14Q14142 442 aa8.71□□□□□ -1.01
HMGB1-203ENST00000341423 NAA25Q14CX7 972 aa8.71□□□□□ -1.01
HMGB1-203ENST00000341423 PARGQ86W56 976 aa8.71□□□□□ -1.01
HMGB1-203ENST00000341423 ZBTB18Q99592 522 aa8.71□□□□□ -1.01
HMGB1-203ENST00000341423 PSD3Q9NYI0 1048 aa8.71□□□□□ -1.01
HMGB1-203ENST00000341423 HCN2Q9UL51 889 aa8.71□□□□□ -1.01
HMGB1-203ENST00000341423 C10orf71Q711Q0 1435 aa8.71□□□□□ -1.01
HMGB1-203ENST00000341423 E9PMD0 336 aa8.71□□□□□ -1.02
HMGB1-203ENST00000341423 KLHL18O94889 574 aa8.71□□□□□ -1.02
HMGB1-203ENST00000341423 SOD2P04179 222 aa8.71□□□□□ -1.02
HMGB1-203ENST00000341423 PDGFRAP16234 1089 aa8.71□□□□□ -1.02
HMGB1-203ENST00000341423 DYNLT1P63172 113 aa8.71□□□□□ -1.02
HMGB1-203ENST00000341423 TRIM72Q6ZMU5 477 aa8.71□□□□□ -1.02
HMGB1-203ENST00000341423 MLKLQ8NB16 471 aa8.71□□□□□ -1.02
HMGB1-203ENST00000341423 ASB2Q96Q27 587 aa8.71□□□□□ -1.02
HMGB1-203ENST00000341423 MAP3K3Q99759 626 aa8.71□□□□□ -1.02
HMGB1-203ENST00000341423 GSDMCQ9BYG8 508 aa8.71□□□□□ -1.02
HMGB1-203ENST00000341423 WDR6Q9NNW5 1121 aaKnown RBP8.71□□□□□ -1.02
HMGB1-203ENST00000341423 FAM227AF5H4B4 570 aa8.71□□□□□ -1.02
HMGB1-203ENST00000341423 HMGB3O15347 200 aaKnown RBP8.71□□□□□ -1.02
HMGB1-203ENST00000341423 EXTL3O43909 919 aa8.71□□□□□ -1.02
HMGB1-203ENST00000341423 TLR5O60602 858 aa8.71□□□□□ -1.02
HMGB1-203ENST00000341423 CDK4P11802 303 aa8.71□□□□□ -1.02
HMGB1-203ENST00000341423 ITGB6P18564 788 aa8.71□□□□□ -1.02
HMGB1-203ENST00000341423 OR1E1P30953 314 aa8.71□□□□□ -1.02
HMGB1-203ENST00000341423 RABL6Q3YEC7 729 aaPredicted RBP8.71□□□□□ -1.02
HMGB1-203ENST00000341423 MLIPQ5VWP3 458 aa8.71□□□□□ -1.02
HMGB1-203ENST00000341423 ARL6IP4Q66PJ3 421 aaKnown RBP8.71□□□□□ -1.02
HMGB1-203ENST00000341423 PEX26Q7Z412 305 aa8.71□□□□□ -1.02
HMGB1-203ENST00000341423 MRRFQ96E11 262 aaKnown RBP8.71□□□□□ -1.02
HMGB1-203ENST00000341423 EPSTI1Q96J88 318 aa8.71□□□□□ -1.02
HMGB1-203ENST00000341423 MAGED4Q96JG8 741 aa8.71□□□□□ -1.02
HMGB1-203ENST00000341423 CDH19Q9H159 772 aa8.71□□□□□ -1.02
HMGB1-203ENST00000341423 DNAJC25Q9H1X3 360 aa8.71□□□□□ -1.02
HMGB1-203ENST00000341423 ZBTB40Q9NUA8 1239 aa8.71□□□□□ -1.02
HMGB1-203ENST00000341423 TDP1Q9NUW8 608 aa8.71□□□□□ -1.02
HMGB1-203ENST00000341423 VAV3Q9UKW4 847 aa8.71□□□□□ -1.02
HMGB1-203ENST00000341423 SLC6A14Q9UN76 642 aa8.71□□□□□ -1.02
HMGB1-203ENST00000341423 LRRIQ1Q96JM4 1722 aa8.71□□□□□ -1.02
HMGB1-203ENST00000341423 MKRN2OSH3BPM6 223 aa8.7□□□□□ -1.02
HMGB1-203ENST00000341423 TDP2O95551 362 aa8.7□□□□□ -1.02
HMGB1-203ENST00000341423 NIPA1Q7RTP0 329 aa8.7□□□□□ -1.02
HMGB1-203ENST00000341423 EXT2Q93063 718 aa8.7□□□□□ -1.02
HMGB1-203ENST00000341423 DPYSL5Q9BPU6 564 aa8.7□□□□□ -1.02
HMGB1-203ENST00000341423 AGO4Q9HCK5 861 aaKnown RBP8.7□□□□□ -1.02
HMGB1-203ENST00000341423 ZDHHC7Q9NXF8 308 aa8.7□□□□□ -1.02
HMGB1-203ENST00000341423 CHORDC1Q9UHD1 332 aaPredicted RBP8.7□□□□□ -1.02
HMGB1-203ENST00000341423 MUTYHQ9UIF7 546 aa8.7□□□□□ -1.02
HMGB1-203ENST00000341423 CDH9Q9ULB4 789 aa8.7□□□□□ -1.02
HMGB1-203ENST00000341423 COL14A1Q05707 1796 aaKnown RBP8.7□□□□□ -1.02
HMGB1-203ENST00000341423 ISM1B1AKI9 464 aa8.7□□□□□ -1.02
HMGB1-203ENST00000341423 PALMO75781 387 aa8.7□□□□□ -1.02
HMGB1-203ENST00000341423 ENO2P09104 434 aaPredicted RBP8.7□□□□□ -1.02
HMGB1-203ENST00000341423 H2AFZP0C0S5 128 aa8.7□□□□□ -1.02
HMGB1-203ENST00000341423 JADE1Q6IE81 842 aa8.7□□□□□ -1.02
HMGB1-203ENST00000341423 H2AFVQ71UI9 128 aa8.7□□□□□ -1.02
HMGB1-203ENST00000341423 ECHDC2Q86YB7 292 aa8.7□□□□□ -1.02
HMGB1-203ENST00000341423 SH3RF2Q8TEC5 729 aa8.7□□□□□ -1.02
HMGB1-203ENST00000341423 PDE7BQ9NP56 450 aa8.7□□□□□ -1.02
HMGB1-203ENST00000341423 FBXL12Q9NXK8 326 aa8.7□□□□□ -1.02
HMGB1-203ENST00000341423 GDE1Q9NZC3 331 aa8.7□□□□□ -1.02
HMGB1-203ENST00000341423 ARHGAP26Q9UNA1 814 aa8.7□□□□□ -1.02
HMGB1-203ENST00000341423 CICQ96RK0 1608 aaPredicted RBP8.7□□□□□ -1.02
HMGB1-203ENST00000341423 PIPSLA2A3N6 862 aa8.7□□□□□ -1.02
HMGB1-203ENST00000341423 I3L4J1 428 aa8.7□□□□□ -1.02
HMGB1-203ENST00000341423 ACAT1P24752 427 aaKnown RBP8.7□□□□□ -1.02
HMGB1-203ENST00000341423 RALGDSQ12967 914 aa8.7□□□□□ -1.02
HMGB1-203ENST00000341423 LLGL1Q15334 1064 aa8.7□□□□□ -1.02
HMGB1-203ENST00000341423 SNX30Q5VWJ9 437 aa8.7□□□□□ -1.02
HMGB1-203ENST00000341423 SIRT2Q8IXJ6 389 aa8.7□□□□□ -1.02
HMGB1-203ENST00000341423 PHC3Q8NDX5 983 aa8.7□□□□□ -1.02
HMGB1-203ENST00000341423 SLC22A17Q8WUG5 538 aa8.7□□□□□ -1.02
HMGB1-203ENST00000341423 C17orf80Q9BSJ5 609 aa8.7□□□□□ -1.02
HMGB1-203ENST00000341423 GCNT4Q9P109 453 aa8.7□□□□□ -1.02
HMGB1-203ENST00000341423 LIMA1Q9UHB6 759 aaKnown RBP8.7□□□□□ -1.02
HMGB1-203ENST00000341423 AMFRQ9UKV5 643 aa8.7□□□□□ -1.02
HMGB1-203ENST00000341423 NEDD4P46934 1319 aa8.7□□□□□ -1.02
HMGB1-203ENST00000341423 B4DGG1 531 aa8.7□□□□□ -1.02
HMGB1-203ENST00000341423 SGK1O00141 431 aa8.7□□□□□ -1.02
HMGB1-203ENST00000341423 MTSS1O43312 755 aa8.7□□□□□ -1.02
HMGB1-203ENST00000341423 ABOP16442 354 aa8.7□□□□□ -1.02
HMGB1-203ENST00000341423 TCN2P20062 427 aa8.7□□□□□ -1.02
HMGB1-203ENST00000341423 ELK3P41970 407 aa8.7□□□□□ -1.02
HMGB1-203ENST00000341423 ADKP55263 362 aaKnown RBP8.7□□□□□ -1.02
HMGB1-203ENST00000341423 WDR5P61964 334 aaKnown RBP8.7□□□□□ -1.02
HMGB1-203ENST00000341423 RBBP7Q16576 425 aa8.7□□□□□ -1.02
Retrieved 100 of 20,778 RNA–protein pairs in 21.7 ms