RNA–Protein interactions for RNA: ENST00000339997.8

RTN3-202, Transcript of reticulon 3, humanhuman

TSL 1 (best) BASIC

Gene RTN3, Length 4,886 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-202ENST00000339997 ELMO1Q92556 727 aa8.94□□□□□ -0.98
RTN3-202ENST00000339997 FIG4Q92562 907 aa8.94□□□□□ -0.98
RTN3-202ENST00000339997 OMA1Q96E52 524 aa8.94□□□□□ -0.98
RTN3-202ENST00000339997 ABHD8Q96I13 439 aa8.94□□□□□ -0.98
RTN3-202ENST00000339997 ZC3H4Q9UPT8 1303 aaKnown RBP8.94□□□□□ -0.98
RTN3-202ENST00000339997 A0A1W2PPM1 405 aa8.94□□□□□ -0.98
RTN3-202ENST00000339997 KRT87PA6NCN2 255 aa8.94□□□□□ -0.98
RTN3-202ENST00000339997 IQCJ-SCHIP1C9J366 451 aaPredicted RBP8.94□□□□□ -0.98
RTN3-202ENST00000339997 EML1O00423 815 aa8.94□□□□□ -0.98
RTN3-202ENST00000339997 GLRA3O75311 464 aa8.94□□□□□ -0.98
RTN3-202ENST00000339997 ZBTB11O95625 1053 aaPredicted RBP8.94□□□□□ -0.98
RTN3-202ENST00000339997 TCF3P15923 654 aa8.94□□□□□ -0.98
RTN3-202ENST00000339997 CHRNB3Q05901 458 aa8.94□□□□□ -0.98
RTN3-202ENST00000339997 CCNG2Q16589 344 aa8.94□□□□□ -0.98
RTN3-202ENST00000339997 ELMSAN1Q6PJG2 1045 aa8.94□□□□□ -0.98
RTN3-202ENST00000339997 SAMD7Q7Z3H4 446 aa8.94□□□□□ -0.98
RTN3-202ENST00000339997 HDDC2Q7Z4H3 204 aa8.94□□□□□ -0.98
RTN3-202ENST00000339997 VN1R5Q7Z5H4 357 aa8.94□□□□□ -0.98
RTN3-202ENST00000339997 AMIGO2Q86SJ2 522 aa8.94□□□□□ -0.98
RTN3-202ENST00000339997 EXOC3L1Q86VI1 746 aa8.94□□□□□ -0.98
RTN3-202ENST00000339997 ATG16L2Q8NAA4 619 aa8.94□□□□□ -0.98
RTN3-202ENST00000339997 KYQ8NBH2 561 aa8.94□□□□□ -0.98
RTN3-202ENST00000339997 WDR48Q8TAF3 677 aa8.94□□□□□ -0.98
RTN3-202ENST00000339997 SCFD2Q8WU76 684 aa8.94□□□□□ -0.98
RTN3-202ENST00000339997 ASZ1Q8WWH4 475 aa8.94□□□□□ -0.98
RTN3-202ENST00000339997 CASP10Q92851 521 aa8.94□□□□□ -0.98
RTN3-202ENST00000339997 PHF21AQ96BD5 680 aa8.94□□□□□ -0.98
RTN3-202ENST00000339997 ZNF512Q96ME7 567 aaPredicted RBP8.94□□□□□ -0.98
RTN3-202ENST00000339997 ELP3Q9H9T3 547 aa8.94□□□□□ -0.98
RTN3-202ENST00000339997 SLC8A2Q9UPR5 921 aa8.94□□□□□ -0.98
RTN3-202ENST00000339997 SMAPO00193 183 aa8.94□□□□□ -0.98
RTN3-202ENST00000339997 SCAMP3O14828 347 aaKnown RBP8.94□□□□□ -0.98
RTN3-202ENST00000339997 AVILO75366 819 aa8.94□□□□□ -0.98
RTN3-202ENST00000339997 PSMG1O95456 288 aa8.94□□□□□ -0.98
RTN3-202ENST00000339997 GUCA1CO95843 209 aa8.94□□□□□ -0.98
RTN3-202ENST00000339997 GARTP22102 1010 aa8.94□□□□□ -0.98
RTN3-202ENST00000339997 IREB2P48200 963 aaKnown RBP8.94□□□□□ -0.98
RTN3-202ENST00000339997 DEFA1P59665 94 aa8.94□□□□□ -0.98
RTN3-202ENST00000339997 DEFA3P59666 94 aa8.94□□□□□ -0.98
RTN3-202ENST00000339997 RRP1BQ14684 758 aaKnown RBP8.94□□□□□ -0.98
RTN3-202ENST00000339997 BOLA3Q53S33 107 aa8.94□□□□□ -0.98
RTN3-202ENST00000339997 ARHGAP17Q68EM7 881 aa8.94□□□□□ -0.98
RTN3-202ENST00000339997 PKN3Q6P5Z2 889 aa8.94□□□□□ -0.98
RTN3-202ENST00000339997 NPNTQ6UXI9 565 aa8.94□□□□□ -0.98
RTN3-202ENST00000339997 TNS4Q8IZW8 715 aa8.94□□□□□ -0.98
RTN3-202ENST00000339997 UXS1Q8NBZ7 420 aa8.94□□□□□ -0.98
RTN3-202ENST00000339997 ZNF606Q8WXB4 792 aa8.94□□□□□ -0.98
RTN3-202ENST00000339997 CPB2Q96IY4 423 aa8.94□□□□□ -0.98
RTN3-202ENST00000339997 GPAMQ9HCL2 828 aa8.94□□□□□ -0.98
RTN3-202ENST00000339997 CAB39Q9Y376 341 aaPredicted RBP8.94□□□□□ -0.98
RTN3-202ENST00000339997 TBX3O15119 743 aa8.94□□□□□ -0.98
RTN3-202ENST00000339997 ERVK-10P10266 1014 aa8.94□□□□□ -0.98
RTN3-202ENST00000339997 AMPD1P23109 780 aa8.94□□□□□ -0.98
RTN3-202ENST00000339997 ACAT1P24752 427 aaKnown RBP8.94□□□□□ -0.98
RTN3-202ENST00000339997 MGAT1P26572 445 aa8.94□□□□□ -0.98
RTN3-202ENST00000339997 PEX5P50542 639 aa8.94□□□□□ -0.98
RTN3-202ENST00000339997 SEMA3FQ13275 785 aa8.94□□□□□ -0.98
RTN3-202ENST00000339997 MPP3Q13368 585 aa8.94□□□□□ -0.98
RTN3-202ENST00000339997 ERMARDQ5T6L9 678 aa8.94□□□□□ -0.98
RTN3-202ENST00000339997 DDI2Q5TDH0 399 aa8.94□□□□□ -0.98
RTN3-202ENST00000339997 SYTL1Q8IYJ3 562 aa8.94□□□□□ -0.98
RTN3-202ENST00000339997 COLGALT1Q8NBJ5 622 aa8.94□□□□□ -0.98
RTN3-202ENST00000339997 B3GALNT2Q8NCR0 500 aa8.94□□□□□ -0.98
RTN3-202ENST00000339997 PPP2R3CQ969Q6 453 aa8.94□□□□□ -0.98
RTN3-202ENST00000339997 GFM2Q969S9 779 aaKnown RBP8.94□□□□□ -0.98
RTN3-202ENST00000339997 MMP19Q99542 508 aa8.94□□□□□ -0.98
RTN3-202ENST00000339997 FOXP3Q9BZS1 431 aa8.94□□□□□ -0.98
RTN3-202ENST00000339997 SENP6Q9GZR1 1112 aaPredicted RBP8.94□□□□□ -0.98
RTN3-202ENST00000339997 ABI2Q9NYB9 513 aaPredicted RBP8.94□□□□□ -0.98
RTN3-202ENST00000339997 AP4S1Q9Y587 144 aa8.94□□□□□ -0.98
RTN3-202ENST00000339997 USP54Q70EL1 1684 aa8.93□□□□□ -0.98
RTN3-202ENST00000339997 CFAP74Q9C0B2 1584 aa8.93□□□□□ -0.98
RTN3-202ENST00000339997 IGSF9BQ9UPX0 1349 aa8.93□□□□□ -0.98
RTN3-202ENST00000339997 SPAG6O75602 509 aa8.93□□□□□ -0.98
RTN3-202ENST00000339997 CPSF4O95639 269 aaKnown RBP8.93□□□□□ -0.98
RTN3-202ENST00000339997 VTNP04004 478 aa8.93□□□□□ -0.98
RTN3-202ENST00000339997 NAGLUP54802 743 aa8.93□□□□□ -0.98
RTN3-202ENST00000339997 VAC14Q08AM6 782 aa8.93□□□□□ -0.98
RTN3-202ENST00000339997 ATP6AP1LQ52LC2 224 aa8.93□□□□□ -0.98
RTN3-202ENST00000339997 DALRD3Q5D0E6 543 aaKnown RBP8.93□□□□□ -0.98
RTN3-202ENST00000339997 ALYREFQ86V81 257 aaKnown RBP8.93□□□□□ -0.98
RTN3-202ENST00000339997 SPATA2LQ8IUW3 424 aaPredicted RBP8.93□□□□□ -0.98
RTN3-202ENST00000339997 MCOLN2Q8IZK6 566 aa8.93□□□□□ -0.98
RTN3-202ENST00000339997 FLAD1Q8NFF5 587 aa8.93□□□□□ -0.98
RTN3-202ENST00000339997 RBM46Q8TBY0 533 aaKnown RBP8.93□□□□□ -0.98
RTN3-202ENST00000339997 GPRASP2Q96D09 838 aa8.93□□□□□ -0.98
RTN3-202ENST00000339997 RMND5BQ96G75 393 aaPredicted RBP8.93□□□□□ -0.98
RTN3-202ENST00000339997 PLEKHA8Q96JA3 519 aa8.93□□□□□ -0.98
RTN3-202ENST00000339997 OMDQ99983 421 aa8.93□□□□□ -0.98
RTN3-202ENST00000339997 GPR63Q9BZJ6 419 aa8.93□□□□□ -0.98
RTN3-202ENST00000339997 MUC3BQ9H195 1237 aa8.93□□□□□ -0.98
RTN3-202ENST00000339997 VPS33BQ9H267 617 aa8.93□□□□□ -0.98
RTN3-202ENST00000339997 NSMCE4AQ9NXX6 385 aa8.93□□□□□ -0.98
RTN3-202ENST00000339997 ACOT9Q9Y305 439 aa8.93□□□□□ -0.98
RTN3-202ENST00000339997 PRKAB1Q9Y478 270 aa8.93□□□□□ -0.98
RTN3-202ENST00000339997 BRWD1Q9NSI6 2320 aa8.93□□□□□ -0.98
RTN3-202ENST00000339997 AKAP12Q02952 1782 aa8.93□□□□□ -0.98
RTN3-202ENST00000339997 A0A1B0GW55 424 aa8.93□□□□□ -0.98
RTN3-202ENST00000339997 ZNF862O60290 1169 aa8.93□□□□□ -0.98
RTN3-202ENST00000339997 UNC5CO95185 931 aa8.93□□□□□ -0.98
Retrieved 100 of 20,778 RNA–protein pairs in 34 ms