RNA–Protein interactions for RNA: ENST00000333496.14

CLN3-201, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,608 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-201ENST00000333496 LAMTOR5O43504 91 aa16.58■□□□□ 0.24
CLN3-201ENST00000333496 KLKB1P03952 638 aa16.58■□□□□ 0.24
CLN3-201ENST00000333496 SP9P0CG40 484 aa16.58■□□□□ 0.24
CLN3-201ENST00000333496 UCHL3P15374 230 aa16.58■□□□□ 0.24
CLN3-201ENST00000333496 DRAP1Q14919 205 aaPredicted RBP16.58■□□□□ 0.24
CLN3-201ENST00000333496 LY6G5CQ5SRR4 150 aa16.58■□□□□ 0.24
CLN3-201ENST00000333496 BTBD8Q5XKL5 378 aa16.58■□□□□ 0.24
CLN3-201ENST00000333496 SMYD5Q6GMV2 418 aa16.58■□□□□ 0.24
CLN3-201ENST00000333496 TADA2BQ86TJ2 420 aa16.58■□□□□ 0.24
CLN3-201ENST00000333496 SLC47A2Q86VL8 602 aa16.58■□□□□ 0.24
CLN3-201ENST00000333496 WDTC1Q8N5D0 677 aa16.58■□□□□ 0.24
CLN3-201ENST00000333496 EDEM1Q92611 657 aa16.58■□□□□ 0.24
CLN3-201ENST00000333496 CD101Q93033 1021 aa16.58■□□□□ 0.24
CLN3-201ENST00000333496 CDK5RAP1Q96SZ6 601 aaKnown RBP16.58■□□□□ 0.24
CLN3-201ENST00000333496 GANQ9H2C0 597 aa16.58■□□□□ 0.24
CLN3-201ENST00000333496 RTN4Q9NQC3 1192 aaKnown RBP16.58■□□□□ 0.24
CLN3-201ENST00000333496 C2orf42Q9NWW7 574 aa16.58■□□□□ 0.24
CLN3-201ENST00000333496 RASAL2Q9UJF2 1139 aa16.58■□□□□ 0.24
CLN3-201ENST00000333496 ATP1A3P13637 1013 aa16.57■□□□□ 0.24
CLN3-201ENST00000333496 PTK2Q05397 1052 aa16.57■□□□□ 0.24
CLN3-201ENST00000333496 MESP2Q0VG99 397 aa16.57■□□□□ 0.24
CLN3-201ENST00000333496 GRSF1Q12849 480 aaKnown RBP eCLIP16.57■□□□□ 0.24
CLN3-201ENST00000333496 RAPGEF1Q13905 1077 aa16.57■□□□□ 0.24
CLN3-201ENST00000333496 PKN3Q6P5Z2 889 aa16.57■□□□□ 0.24
CLN3-201ENST00000333496 Q6ZNB5 142 aa16.57■□□□□ 0.24
CLN3-201ENST00000333496 C12orf40Q86WS4 652 aa16.57■□□□□ 0.24
CLN3-201ENST00000333496 TMEM25Q86YD3 366 aa16.57■□□□□ 0.24
CLN3-201ENST00000333496 DHX40Q8IX18 779 aaKnown RBP16.57■□□□□ 0.24
CLN3-201ENST00000333496 STK32AQ8WU08 396 aa16.57■□□□□ 0.24
CLN3-201ENST00000333496 BPIFA3Q9BQP9 254 aa16.57■□□□□ 0.24
CLN3-201ENST00000333496 IER2Q9BTL4 223 aa16.57■□□□□ 0.24
CLN3-201ENST00000333496 SLC4A5Q9BY07 1137 aa16.57■□□□□ 0.24
CLN3-201ENST00000333496 MIS12Q9H081 205 aa16.57■□□□□ 0.24
CLN3-201ENST00000333496 PLCB1Q9NQ66 1216 aa16.57■□□□□ 0.24
CLN3-201ENST00000333496 PRMT8Q9NR22 394 aaPredicted RBP16.57■□□□□ 0.24
CLN3-201ENST00000333496 MARCH2Q9P0N8 246 aa16.57■□□□□ 0.24
CLN3-201ENST00000333496 FBXO4Q9UKT5 387 aa16.57■□□□□ 0.24
CLN3-201ENST00000333496 PCDHGC3Q9UN70 934 aa16.57■□□□□ 0.24
CLN3-201ENST00000333496 SIK3Q9Y2K2 1263 aa16.57■□□□□ 0.24
CLN3-201ENST00000333496 EPHB6O15197 1021 aa16.56■□□□□ 0.24
CLN3-201ENST00000333496 HMBSP08397 361 aa16.56■□□□□ 0.24
CLN3-201ENST00000333496 DRD1P21728 446 aa16.56■□□□□ 0.24
CLN3-201ENST00000333496 SLC6A11P48066 632 aa16.56■□□□□ 0.24
CLN3-201ENST00000333496 COG7P83436 770 aa16.56■□□□□ 0.24
CLN3-201ENST00000333496 GOLGA8FQ08AF8 430 aa16.56■□□□□ 0.24
CLN3-201ENST00000333496 GOLGA8DPQ0D2H9 430 aa16.56■□□□□ 0.24
CLN3-201ENST00000333496 TSSK4Q6SA08 328 aa16.56■□□□□ 0.24
CLN3-201ENST00000333496 RSRC2Q7L4I2 434 aaKnown RBP16.56■□□□□ 0.24
CLN3-201ENST00000333496 SCUBE3Q8IX30 993 aa16.56■□□□□ 0.24
CLN3-201ENST00000333496 SYNPOQ8N3V7 929 aa16.56■□□□□ 0.24
CLN3-201ENST00000333496 SPEM1Q8N4L4 309 aa16.56■□□□□ 0.24
CLN3-201ENST00000333496 IRGQQ8WZA9 623 aa16.56■□□□□ 0.24
CLN3-201ENST00000333496 SPHK2Q9NRA0 654 aa16.56■□□□□ 0.24
CLN3-201ENST00000333496 ST7Q9NRC1 585 aa16.56■□□□□ 0.24
CLN3-201ENST00000333496 ABCC13Q9NSE7 274 aa16.56■□□□□ 0.24
CLN3-201ENST00000333496 TJP2Q9UDY2 1190 aa16.56■□□□□ 0.24
CLN3-201ENST00000333496 SFMBT1Q9UHJ3 866 aa16.56■□□□□ 0.24
CLN3-201ENST00000333496 EML5Q05BV3 1969 aa16.56■□□□□ 0.24
CLN3-201ENST00000333496 SYCE3A1L190 88 aa16.56■□□□□ 0.24
CLN3-201ENST00000333496 ANTXRLA6NF34 631 aa16.56■□□□□ 0.24
CLN3-201ENST00000333496 ADH1CP00326 375 aa16.56■□□□□ 0.24
CLN3-201ENST00000333496 ADH5P11766 374 aa16.56■□□□□ 0.24
CLN3-201ENST00000333496 NBL1P41271 181 aa16.56■□□□□ 0.24
CLN3-201ENST00000333496 ZNF445P59923 1031 aa16.56■□□□□ 0.24
CLN3-201ENST00000333496 SATB1Q01826 763 aa16.56■□□□□ 0.24
CLN3-201ENST00000333496 TMEM110Q86TL2 294 aa16.56■□□□□ 0.24
CLN3-201ENST00000333496 P2RY11Q96G91 374 aa16.56■□□□□ 0.24
CLN3-201ENST00000333496 STK33Q9BYT3 514 aa16.56■□□□□ 0.24
CLN3-201ENST00000333496 NAT10Q9H0A0 1025 aaKnown RBP16.56■□□□□ 0.24
CLN3-201ENST00000333496 OLA1Q9NTK5 396 aaKnown RBP16.56■□□□□ 0.24
CLN3-201ENST00000333496 LSM7Q9UK45 103 aaKnown RBP16.56■□□□□ 0.24
CLN3-201ENST00000333496 SLC12A8A0AV02 714 aa16.55■□□□□ 0.24
CLN3-201ENST00000333496 LGALS16A8MUM7 142 aa16.55■□□□□ 0.24
CLN3-201ENST00000333496 E5RJQ4 531 aa16.55■□□□□ 0.24
CLN3-201ENST00000333496 PAPSS1O43252 624 aaPredicted RBP16.55■□□□□ 0.24
CLN3-201ENST00000333496 FBXO21O94952 628 aa16.55■□□□□ 0.24
CLN3-201ENST00000333496 LTFP02788 710 aa16.55■□□□□ 0.24
CLN3-201ENST00000333496 FYNP06241 537 aa16.55■□□□□ 0.24
CLN3-201ENST00000333496 TPM2P07951 284 aa16.55■□□□□ 0.24
CLN3-201ENST00000333496 TDGF1P13385 188 aa16.55■□□□□ 0.24
CLN3-201ENST00000333496 CDK11BP21127 795 aaKnown RBP16.55■□□□□ 0.24
CLN3-201ENST00000333496 HOXC13P31276 330 aa16.55■□□□□ 0.24
CLN3-201ENST00000333496 ACADSBP45954 432 aa16.55■□□□□ 0.24
CLN3-201ENST00000333496 CSTF1Q05048 431 aaKnown RBP16.55■□□□□ 0.24
CLN3-201ENST00000333496 GAD2Q05329 585 aa16.55■□□□□ 0.24
CLN3-201ENST00000333496 PDCLQ13371 301 aa16.55■□□□□ 0.24
CLN3-201ENST00000333496 ZNF528Q3MIS6 628 aa16.55■□□□□ 0.24
CLN3-201ENST00000333496 FKBP15Q5T1M5 1219 aa16.55■□□□□ 0.24
CLN3-201ENST00000333496 MSANTD2Q6P1R3 559 aa16.55■□□□□ 0.24
CLN3-201ENST00000333496 PASD1Q8IV76 773 aa16.55■□□□□ 0.24
CLN3-201ENST00000333496 FMNL3Q8IVF7 1028 aa16.55■□□□□ 0.24
CLN3-201ENST00000333496 SFTPA1Q8IWL2 248 aa16.55■□□□□ 0.24
CLN3-201ENST00000333496 ETFBKMTQ8IXQ9 262 aa16.55■□□□□ 0.24
CLN3-201ENST00000333496 PHTF2Q8N3S3 785 aa16.55■□□□□ 0.24
CLN3-201ENST00000333496 NELL1Q92832 810 aa16.55■□□□□ 0.24
CLN3-201ENST00000333496 LHX5Q9H2C1 402 aa16.55■□□□□ 0.24
CLN3-201ENST00000333496 FAM207AQ9NSI2 230 aaPredicted RBP16.55■□□□□ 0.24
CLN3-201ENST00000333496 F8VZ95 297 aa16.54■□□□□ 0.24
CLN3-201ENST00000333496 K7EQS6 105 aa16.54■□□□□ 0.24
CLN3-201ENST00000333496 HOXC11O43248 304 aaPredicted RBP16.54■□□□□ 0.24
Retrieved 100 of 20,778 RNA–protein pairs in 34.5 ms