RNA–Protein interactions for RNA: ENST00000323668.11

TCOF1-201, Transcript of treacle ribosome biogenesis factor 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene TCOF1, Length 4,832 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-201ENST00000323668 RARBP10826 455 aa15.2■□□□□ 0.02
TCOF1-201ENST00000323668 TBL3Q12788 808 aaKnown RBP15.2■□□□□ 0.02
TCOF1-201ENST00000323668 C15orf59Q2T9L4 293 aaPredicted RBP15.2■□□□□ 0.02
TCOF1-201ENST00000323668 SEL1L3Q68CR1 1132 aa15.2■□□□□ 0.02
TCOF1-201ENST00000323668 SCUBE3Q8IX30 993 aa15.2■□□□□ 0.02
TCOF1-201ENST00000323668 PIWIL2Q8TC59 973 aaKnown RBP15.2■□□□□ 0.02
TCOF1-201ENST00000323668 ELMO2Q96JJ3 720 aa15.2■□□□□ 0.02
TCOF1-201ENST00000323668 COL20A1Q9P218 1284 aa15.2■□□□□ 0.02
TCOF1-201ENST00000323668 hCG_2014768A0A024R1R8 64 aa15.2■□□□□ 0.02
TCOF1-201ENST00000323668 TNFSF9P41273 254 aa15.2■□□□□ 0.02
TCOF1-201ENST00000323668 ZNF143P52747 638 aaPredicted RBP15.2■□□□□ 0.02
TCOF1-201ENST00000323668 THEM5Q8N1Q8 247 aa15.2■□□□□ 0.02
TCOF1-201ENST00000323668 HTR3CQ8WXA8 447 aa15.2■□□□□ 0.02
TCOF1-201ENST00000323668 BORCS6Q96GS4 357 aa15.2■□□□□ 0.02
TCOF1-201ENST00000323668 RNF157Q96PX1 679 aa15.2■□□□□ 0.02
TCOF1-201ENST00000323668 ING2Q9H160 280 aa15.2■□□□□ 0.02
TCOF1-201ENST00000323668 ARHGEF38Q9NXL2 777 aa15.2■□□□□ 0.02
TCOF1-201ENST00000323668 ARHGAP28Q9P2N2 729 aa15.2■□□□□ 0.02
TCOF1-201ENST00000323668 UBQLN1Q9UMX0 589 aaKnown RBP15.2■□□□□ 0.02
TCOF1-201ENST00000323668 SORCS3Q9UPU3 1222 aa15.2■□□□□ 0.02
TCOF1-201ENST00000323668 LRP6O75581 1613 aa15.2■□□□□ 0.02
TCOF1-201ENST00000323668 ASMTLO95671 621 aa15.2■□□□□ 0.02
TCOF1-201ENST00000323668 FOXN2P32314 431 aa15.2■□□□□ 0.02
TCOF1-201ENST00000323668 NR2C2P49116 596 aa15.2■□□□□ 0.02
TCOF1-201ENST00000323668 LY6KQ17RY6 165 aa15.2■□□□□ 0.02
TCOF1-201ENST00000323668 TRIM62Q9BVG3 475 aa15.2■□□□□ 0.02
TCOF1-201ENST00000323668 NRDE2Q9H7Z3 1164 aa15.2■□□□□ 0.02
TCOF1-201ENST00000323668 WDR27A2RRH5 827 aa15.2■□□□□ 0.02
TCOF1-201ENST00000323668 LACTBL1A8MY62 500 aa15.2■□□□□ 0.02
TCOF1-201ENST00000323668 TOMM70O94826 608 aa15.2■□□□□ 0.02
TCOF1-201ENST00000323668 TRUB2O95900 331 aaKnown RBP15.2■□□□□ 0.02
TCOF1-201ENST00000323668 STX5Q13190 355 aa15.2■□□□□ 0.02
TCOF1-201ENST00000323668 CAPSQ13938 189 aa15.2■□□□□ 0.02
TCOF1-201ENST00000323668 BNC2Q6ZN30 1099 aaPredicted RBP15.2■□□□□ 0.02
TCOF1-201ENST00000323668 ANKS1BQ7Z6G8 1248 aa15.2■□□□□ 0.02
TCOF1-201ENST00000323668 DDIASQ8IXT1 998 aa15.2■□□□□ 0.02
TCOF1-201ENST00000323668 SGF29Q96ES7 293 aa15.2■□□□□ 0.02
TCOF1-201ENST00000323668 CPB2Q96IY4 423 aa15.2■□□□□ 0.02
TCOF1-201ENST00000323668 TSPYL2Q9H2G4 693 aaPredicted RBP15.2■□□□□ 0.02
TCOF1-201ENST00000323668 ITGA11Q9UKX5 1188 aa15.2■□□□□ 0.02
TCOF1-201ENST00000323668 ORC6Q9Y5N6 252 aa15.2■□□□□ 0.02
TCOF1-201ENST00000323668 LAMB4A4D0S4 1761 aa15.19■□□□□ 0.02
TCOF1-201ENST00000323668 MPP3Q13368 585 aa15.19■□□□□ 0.02
TCOF1-201ENST00000323668 SV2CQ496J9 727 aa15.19■□□□□ 0.02
TCOF1-201ENST00000323668 WLSQ5T9L3 541 aa15.19■□□□□ 0.02
TCOF1-201ENST00000323668 ATPAF2Q8N5M1 289 aa15.19■□□□□ 0.02
TCOF1-201ENST00000323668 IPMKQ8NFU5 416 aa15.19■□□□□ 0.02
TCOF1-201ENST00000323668 MEI4A8MW99 385 aa15.19■□□□□ 0.02
TCOF1-201ENST00000323668 AKAP10O43572 662 aa15.19■□□□□ 0.02
TCOF1-201ENST00000323668 SH3BP5O60239 455 aa15.19■□□□□ 0.02
TCOF1-201ENST00000323668 H2AFYO75367 372 aaKnown RBP15.19■□□□□ 0.02
TCOF1-201ENST00000323668 PROCP04070 461 aa15.19■□□□□ 0.02
TCOF1-201ENST00000323668 PGK2P07205 417 aa15.19■□□□□ 0.02
TCOF1-201ENST00000323668 TAF6P49848 677 aa15.19■□□□□ 0.02
TCOF1-201ENST00000323668 WDR4P57081 412 aaKnown RBP15.19■□□□□ 0.02
TCOF1-201ENST00000323668 TSPY1Q01534 308 aa15.19■□□□□ 0.02
TCOF1-201ENST00000323668 MMRN1Q13201 1228 aa15.19■□□□□ 0.02
TCOF1-201ENST00000323668 PDCD2Q16342 344 aaPredicted RBP15.19■□□□□ 0.02
TCOF1-201ENST00000323668 HABP4Q5JVS0 413 aaKnown RBP15.19■□□□□ 0.02
TCOF1-201ENST00000323668 RNASEH2BQ5TBB1 312 aaKnown RBP15.19■□□□□ 0.02
TCOF1-201ENST00000323668 BTBD8Q5XKL5 378 aa15.19■□□□□ 0.02
TCOF1-201ENST00000323668 C16orf46Q6P387 395 aa15.19■□□□□ 0.02
TCOF1-201ENST00000323668 LRRC43Q8N309 656 aa15.19■□□□□ 0.02
TCOF1-201ENST00000323668 PCYOX1LQ8NBM8 494 aa15.19■□□□□ 0.02
TCOF1-201ENST00000323668 IFT43Q96FT9 208 aa15.19■□□□□ 0.02
TCOF1-201ENST00000323668 ARL8BQ9NVJ2 186 aa15.19■□□□□ 0.02
TCOF1-201ENST00000323668 GSC2O15499 205 aa15.19■□□□□ 0.02
TCOF1-201ENST00000323668 MYL3P08590 195 aa15.19■□□□□ 0.02
TCOF1-201ENST00000323668 NCAM1P13591 858 aa15.19■□□□□ 0.02
TCOF1-201ENST00000323668 PNPLA4P41247 253 aa15.19■□□□□ 0.02
TCOF1-201ENST00000323668 CDKN2BP42772 138 aa15.19■□□□□ 0.02
TCOF1-201ENST00000323668 HSPA13P48723 471 aa15.19■□□□□ 0.02
TCOF1-201ENST00000323668 IL1RL1Q01638 556 aa15.19■□□□□ 0.02
TCOF1-201ENST00000323668 CYLC2Q14093 348 aaPredicted RBP15.19■□□□□ 0.02
TCOF1-201ENST00000323668 DCAF4L1Q3SXM0 396 aa15.19■□□□□ 0.02
TCOF1-201ENST00000323668 NOTUMQ6P988 496 aa15.19■□□□□ 0.02
TCOF1-201ENST00000323668 SERBP1Q8NC51 408 aaKnown RBP eCLIP15.19■□□□□ 0.02
TCOF1-201ENST00000323668 JOSD2Q8TAC2 188 aa15.19■□□□□ 0.02
TCOF1-201ENST00000323668 AKT1S1Q96B36 256 aa15.19■□□□□ 0.02
TCOF1-201ENST00000323668 NTPCRQ9BSD7 190 aaKnown RBP15.19■□□□□ 0.02
TCOF1-201ENST00000323668 TCF7L2Q9NQB0 619 aa15.19■□□□□ 0.02
TCOF1-201ENST00000323668 CHKBQ9Y259 395 aa15.19■□□□□ 0.02
TCOF1-201ENST00000323668 TRPC5OSA6NMA1 111 aa15.19■□□□□ 0.02
TCOF1-201ENST00000323668 ANGPT2O15123 496 aa15.19■□□□□ 0.02
TCOF1-201ENST00000323668 AMPD1P23109 780 aa15.19■□□□□ 0.02
TCOF1-201ENST00000323668 LINC00523Q86TU6 105 aa15.19■□□□□ 0.02
TCOF1-201ENST00000323668 RFWD2Q8NHY2 731 aa15.19■□□□□ 0.02
TCOF1-201ENST00000323668 TRAPPC12Q8WVT3 735 aa15.19■□□□□ 0.02
TCOF1-201ENST00000323668 CPT1BQ92523 772 aa15.19■□□□□ 0.02
TCOF1-201ENST00000323668 TSPAN17Q96FV3 270 aa15.19■□□□□ 0.02
TCOF1-201ENST00000323668 PIH1D1Q9NWS0 290 aaKnown RBP15.19■□□□□ 0.02
TCOF1-201ENST00000323668 DDIT4Q9NX09 232 aa15.19■□□□□ 0.02
TCOF1-201ENST00000323668 LAMA4Q16363 1823 aa15.18■□□□□ 0.02
TCOF1-201ENST00000323668 SNUPNO95149 360 aaKnown RBP15.18■□□□□ 0.02
TCOF1-201ENST00000323668 SLC6A3Q01959 620 aa15.18■□□□□ 0.02
TCOF1-201ENST00000323668 OR6J1Q8NGC5 347 aa15.18■□□□□ 0.02
TCOF1-201ENST00000323668 CCT7Q99832 543 aa15.18■□□□□ 0.02
TCOF1-201ENST00000323668 APOL2Q9BQE5 337 aa15.18■□□□□ 0.02
TCOF1-201ENST00000323668 CAMSAP3Q9P1Y5 1249 aaPredicted RBP15.18■□□□□ 0.02
TCOF1-201ENST00000323668 DNAJC6O75061 913 aa15.18■□□□□ 0.02
Retrieved 100 of 20,778 RNA–protein pairs in 33.1 ms