RNA–Protein interactions for RNA: ENST00000263274.11

LIG1-201, Transcript of DNA ligase 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIG1, Length 3,384 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-201ENST00000263274 CATSPERGQ6ZRH7 1159 aa13.11□□□□□ -0.31
LIG1-201ENST00000263274 SESTD1Q86VW0 696 aa13.11□□□□□ -0.31
LIG1-201ENST00000263274 TREML1Q86YW5 311 aa13.11□□□□□ -0.31
LIG1-201ENST00000263274 MPP5Q8N3R9 675 aa13.11□□□□□ -0.31
LIG1-201ENST00000263274 RBM15BQ8NDT2 890 aaKnown RBP13.11□□□□□ -0.31
LIG1-201ENST00000263274 FAM149B1Q96BN6 582 aa13.11□□□□□ -0.31
LIG1-201ENST00000263274 LPIN3Q9BQK8 851 aa13.11□□□□□ -0.31
LIG1-201ENST00000263274 EBF4Q9BQW3 602 aa13.11□□□□□ -0.31
LIG1-201ENST00000263274 CDT1Q9H211 546 aa13.11□□□□□ -0.31
LIG1-201ENST00000263274 SNX9Q9Y5X1 595 aa13.11□□□□□ -0.31
LIG1-201ENST00000263274 CENPFP49454 3210 aa13.11□□□□□ -0.31
LIG1-201ENST00000263274 PRR5-ARHGAP8B1AHC4 643 aa13.11□□□□□ -0.31
LIG1-201ENST00000263274 PIGRP01833 764 aa13.11□□□□□ -0.31
LIG1-201ENST00000263274 SLC18A1P54219 525 aa13.11□□□□□ -0.31
LIG1-201ENST00000263274 ARHGAP8P85298 464 aa13.11□□□□□ -0.31
LIG1-201ENST00000263274 MXD4Q14582 209 aaPredicted RBP13.11□□□□□ -0.31
LIG1-201ENST00000263274 SULF1Q8IWU6 871 aa13.11□□□□□ -0.31
LIG1-201ENST00000263274 ITFG2Q969R8 447 aa13.11□□□□□ -0.31
LIG1-201ENST00000263274 MTBPQ96DY7 904 aa13.11□□□□□ -0.31
LIG1-201ENST00000263274 CLMNQ96JQ2 1002 aa13.11□□□□□ -0.31
LIG1-201ENST00000263274 RNF157Q96PX1 679 aa13.11□□□□□ -0.31
LIG1-201ENST00000263274 CNPY3Q9BT09 278 aa13.11□□□□□ -0.31
LIG1-201ENST00000263274 WWP1Q9H0M0 922 aa13.11□□□□□ -0.31
LIG1-201ENST00000263274 KCNK13Q9HB14 408 aa13.11□□□□□ -0.31
LIG1-201ENST00000263274 PACSIN3Q9UKS6 424 aa13.11□□□□□ -0.31
LIG1-201ENST00000263274 PCDHGC3Q9UN70 934 aa13.11□□□□□ -0.31
LIG1-201ENST00000263274 CCDC78A2IDD5 438 aa13.11□□□□□ -0.31
LIG1-201ENST00000263274 GPR25O00155 361 aa13.11□□□□□ -0.31
LIG1-201ENST00000263274 VTNP04004 478 aa13.11□□□□□ -0.31
LIG1-201ENST00000263274 PDGFRBP09619 1106 aa13.11□□□□□ -0.31
LIG1-201ENST00000263274 CSH1P0DML2 217 aa13.11□□□□□ -0.31
LIG1-201ENST00000263274 CSH2P0DML3 217 aa13.11□□□□□ -0.31
LIG1-201ENST00000263274 P4HA1P13674 534 aa13.11□□□□□ -0.31
LIG1-201ENST00000263274 LCP1P13796 627 aa13.11□□□□□ -0.31
LIG1-201ENST00000263274 PHKA2P46019 1235 aa13.11□□□□□ -0.31
LIG1-201ENST00000263274 SLC25A3Q00325 362 aa13.11□□□□□ -0.31
LIG1-201ENST00000263274 GHRHRQ02643 423 aa13.11□□□□□ -0.31
LIG1-201ENST00000263274 NOMO1Q15155 1222 aa13.11□□□□□ -0.31
LIG1-201ENST00000263274 CTC1Q2NKJ3 1217 aa13.11□□□□□ -0.31
LIG1-201ENST00000263274 DENND5BQ6ZUT9 1274 aa13.11□□□□□ -0.31
LIG1-201ENST00000263274 SCUBE1Q8IWY4 988 aa13.11□□□□□ -0.31
LIG1-201ENST00000263274 FBXO16Q8IX29 292 aaPredicted RBP13.11□□□□□ -0.31
LIG1-201ENST00000263274 NME8Q8N427 588 aa13.11□□□□□ -0.31
LIG1-201ENST00000263274 SLC26A7Q8TE54 656 aa13.11□□□□□ -0.31
LIG1-201ENST00000263274 CYLDQ9NQC7 956 aa13.11□□□□□ -0.31
LIG1-201ENST00000263274 A0A087WZ62 844 aa13.1□□□□□ -0.31
LIG1-201ENST00000263274 COL2A1P02458 1487 aaPredicted RBP13.1□□□□□ -0.31
LIG1-201ENST00000263274 ADORA2BP29275 332 aa13.1□□□□□ -0.31
LIG1-201ENST00000263274 GPR162Q16538 588 aa13.1□□□□□ -0.31
LIG1-201ENST00000263274 GOLGA7BQ2TAP0 167 aa13.1□□□□□ -0.31
LIG1-201ENST00000263274 RASIP1Q5U651 963 aa13.1□□□□□ -0.31
LIG1-201ENST00000263274 PLD5Q8N7P1 536 aa13.1□□□□□ -0.31
LIG1-201ENST00000263274 NIPA2Q8N8Q9 360 aa13.1□□□□□ -0.31
LIG1-201ENST00000263274 CMASQ8NFW8 434 aaPredicted RBP13.1□□□□□ -0.31
LIG1-201ENST00000263274 OR6B3Q8NGW1 331 aa13.1□□□□□ -0.31
LIG1-201ENST00000263274 AGAP3Q96P47 875 aa13.1□□□□□ -0.31
LIG1-201ENST00000263274 GBP5Q96PP8 586 aa13.1□□□□□ -0.31
LIG1-201ENST00000263274 FDXACB1Q9BRP7 624 aaPredicted RBP13.1□□□□□ -0.31
LIG1-201ENST00000263274 PIDD1Q9HB75 910 aa13.1□□□□□ -0.31
LIG1-201ENST00000263274 ACSS2Q9NR19 701 aa13.1□□□□□ -0.31
LIG1-201ENST00000263274 ETNK2Q9NVF9 386 aa13.1□□□□□ -0.31
LIG1-201ENST00000263274 PIM2Q9P1W9 311 aa13.1□□□□□ -0.31
LIG1-201ENST00000263274 HESX1Q9UBX0 185 aa13.1□□□□□ -0.31
LIG1-201ENST00000263274 TEX264Q9Y6I9 313 aa13.1□□□□□ -0.31
LIG1-201ENST00000263274 HNRNPCL1O60812 293 aaKnown RBP13.1□□□□□ -0.31
LIG1-201ENST00000263274 SERPINB6P35237 376 aa13.1□□□□□ -0.31
LIG1-201ENST00000263274 ABCG1P45844 678 aa13.1□□□□□ -0.31
LIG1-201ENST00000263274 TMEM62Q0P6H9 643 aa13.1□□□□□ -0.31
LIG1-201ENST00000263274 TTLL12Q14166 644 aaPredicted RBP13.1□□□□□ -0.31
LIG1-201ENST00000263274 GLRA4Q5JXX5 417 aa13.1□□□□□ -0.31
LIG1-201ENST00000263274 TREML2Q5T2D2 321 aa13.1□□□□□ -0.31
LIG1-201ENST00000263274 REPS2Q8NFH8 660 aa13.1□□□□□ -0.31
LIG1-201ENST00000263274 ZNF398Q8TD17 642 aa13.1□□□□□ -0.31
LIG1-201ENST00000263274 NRG4Q8WWG1 115 aa13.1□□□□□ -0.31
LIG1-201ENST00000263274 NIFKQ9BYG3 293 aaKnown RBP13.1□□□□□ -0.31
LIG1-201ENST00000263274 R3HDMLQ9H3Y0 253 aa13.1□□□□□ -0.31
LIG1-201ENST00000263274 SIX4Q9UIU6 781 aa13.1□□□□□ -0.31
LIG1-201ENST00000263274 DNAJC16Q9Y2G8 782 aa13.1□□□□□ -0.31
LIG1-201ENST00000263274 ZMPSTE24O75844 475 aa13.09□□□□□ -0.31
LIG1-201ENST00000263274 PDE5AO76074 875 aa13.09□□□□□ -0.31
LIG1-201ENST00000263274 GBE1Q04446 702 aa13.09□□□□□ -0.31
LIG1-201ENST00000263274 PEX6Q13608 980 aa13.09□□□□□ -0.31
LIG1-201ENST00000263274 MAP1SQ66K74 1059 aaPredicted RBP13.09□□□□□ -0.31
LIG1-201ENST00000263274 IZUMO2Q6UXV1 221 aa13.09□□□□□ -0.31
LIG1-201ENST00000263274 WDR75Q8IWA0 830 aaKnown RBP13.09□□□□□ -0.31
LIG1-201ENST00000263274 MTMR14Q8NCE2 650 aa13.09□□□□□ -0.31
LIG1-201ENST00000263274 KIF12Q96FN5 646 aa13.09□□□□□ -0.31
LIG1-201ENST00000263274 ZNF333Q96JL9 665 aa13.09□□□□□ -0.31
LIG1-201ENST00000263274 SMYD2Q9NRG4 433 aa13.09□□□□□ -0.31
LIG1-201ENST00000263274 LNPEPQ9UIQ6 1025 aa13.09□□□□□ -0.31
LIG1-201ENST00000263274 PLLPQ9Y342 182 aa13.09□□□□□ -0.31
LIG1-201ENST00000263274 DCAF8L1A6NGE4 600 aa13.09□□□□□ -0.31
LIG1-201ENST00000263274 ACKR2O00590 384 aa13.09□□□□□ -0.31
LIG1-201ENST00000263274 ARIH2O95376 493 aa13.09□□□□□ -0.31
LIG1-201ENST00000263274 ZNF143P52747 638 aaPredicted RBP13.09□□□□□ -0.31
LIG1-201ENST00000263274 PDCD2Q16342 344 aaPredicted RBP13.09□□□□□ -0.31
LIG1-201ENST00000263274 HEATR6Q6AI08 1181 aaKnown RBP13.09□□□□□ -0.31
LIG1-201ENST00000263274 UNC5AQ6ZN44 842 aa13.09□□□□□ -0.31
LIG1-201ENST00000263274 TRIM42Q8IWZ5 723 aa13.09□□□□□ -0.31
LIG1-201ENST00000263274 MZB1Q8WU39 189 aa13.09□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 28.2 ms