RNA–Protein interactions for RNA: ENST00000254950.12

VPS4A-201, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS4A, Length 4,100 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-201ENST00000254950 SLC26A9Q7LBE3 791 aa12.02□□□□□ -0.48
VPS4A-201ENST00000254950 NUP93Q8N1F7 819 aa12.02□□□□□ -0.48
VPS4A-201ENST00000254950 GIPC2Q8TF65 315 aa12.02□□□□□ -0.48
VPS4A-201ENST00000254950 SNRNP25Q9BV90 132 aaKnown RBP12.02□□□□□ -0.48
VPS4A-201ENST00000254950 XPO7Q9UIA9 1087 aaKnown RBP12.02□□□□□ -0.48
VPS4A-201ENST00000254950 IQANK1A0A1B0GTG1 560 aa12.02□□□□□ -0.49
VPS4A-201ENST00000254950 F5H5T6 163 aa12.02□□□□□ -0.49
VPS4A-201ENST00000254950 PSMD3O43242 534 aa12.02□□□□□ -0.49
VPS4A-201ENST00000254950 BNIP3LO60238 219 aa12.02□□□□□ -0.49
VPS4A-201ENST00000254950 KRT37O76014 449 aa12.02□□□□□ -0.49
VPS4A-201ENST00000254950 MBL2P11226 248 aaPredicted RBP12.02□□□□□ -0.49
VPS4A-201ENST00000254950 GPD2P43304 727 aa12.02□□□□□ -0.49
VPS4A-201ENST00000254950 RECQLP46063 649 aaPredicted RBP12.02□□□□□ -0.49
VPS4A-201ENST00000254950 DAB2IPQ5VWQ8 1189 aa12.02□□□□□ -0.49
VPS4A-201ENST00000254950 FBXO46Q6PJ61 603 aaPredicted RBP12.02□□□□□ -0.49
VPS4A-201ENST00000254950 CCDC110Q8TBZ0 833 aa12.02□□□□□ -0.49
VPS4A-201ENST00000254950 USP33Q8TEY7 942 aa12.02□□□□□ -0.49
VPS4A-201ENST00000254950 DEPDC1BQ8WUY9 529 aa12.02□□□□□ -0.49
VPS4A-201ENST00000254950 IFT43Q96FT9 208 aa12.02□□□□□ -0.49
VPS4A-201ENST00000254950 WHRNQ9P202 907 aa12.02□□□□□ -0.49
VPS4A-201ENST00000254950 APOC4-APOC2K7ER74 178 aa12.02□□□□□ -0.49
VPS4A-201ENST00000254950 APOC2P02655 101 aa12.02□□□□□ -0.49
VPS4A-201ENST00000254950 KLRC2P26717 231 aa12.02□□□□□ -0.49
VPS4A-201ENST00000254950 FLT3P36888 993 aa12.02□□□□□ -0.49
VPS4A-201ENST00000254950 PPIGQ13427 754 aaKnown RBP eCLIP12.02□□□□□ -0.498e-7■■□□□ 11.4
VPS4A-201ENST00000254950 TRIM60Q495X7 471 aa12.02□□□□□ -0.49
VPS4A-201ENST00000254950 ARHGAP15Q53QZ3 475 aa12.02□□□□□ -0.49
VPS4A-201ENST00000254950 PLCD3Q8N3E9 789 aa12.02□□□□□ -0.49
VPS4A-201ENST00000254950 SMG8Q8ND04 991 aaKnown RBP12.02□□□□□ -0.49
VPS4A-201ENST00000254950 FBXO25Q8TCJ0 367 aa12.02□□□□□ -0.49
VPS4A-201ENST00000254950 PCED1BQ96HM7 432 aa12.02□□□□□ -0.49
VPS4A-201ENST00000254950 PAWRQ96IZ0 340 aaKnown RBP12.02□□□□□ -0.49
VPS4A-201ENST00000254950 EMILIN2Q9BXX0 1053 aa12.02□□□□□ -0.49
VPS4A-201ENST00000254950 SDCBP2Q9H190 292 aa12.02□□□□□ -0.49
VPS4A-201ENST00000254950 PCDH9Q9HC56 1237 aa12.02□□□□□ -0.49
VPS4A-201ENST00000254950 CACNG4Q9UBN1 327 aa12.02□□□□□ -0.49
VPS4A-201ENST00000254950 DPP7Q9UHL4 492 aa12.02□□□□□ -0.49
VPS4A-201ENST00000254950 RAB21Q9UL25 225 aa12.02□□□□□ -0.49
VPS4A-201ENST00000254950 AP3B1O00203 1094 aa12.01□□□□□ -0.49
VPS4A-201ENST00000254950 PIRO00625 290 aa12.01□□□□□ -0.49
VPS4A-201ENST00000254950 SAT1P21673 171 aa12.01□□□□□ -0.49
VPS4A-201ENST00000254950 OR1D2P34982 312 aa12.01□□□□□ -0.49
VPS4A-201ENST00000254950 SESN2P58004 480 aaPredicted RBP12.01□□□□□ -0.49
VPS4A-201ENST00000254950 MTA1Q13330 715 aa12.01□□□□□ -0.49
VPS4A-201ENST00000254950 STAT4Q14765 748 aa12.01□□□□□ -0.49
VPS4A-201ENST00000254950 MTFR1Q15390 333 aa12.01□□□□□ -0.49
VPS4A-201ENST00000254950 BEND6Q5SZJ8 279 aaPredicted RBP12.01□□□□□ -0.49
VPS4A-201ENST00000254950 AGMOQ6ZNB7 445 aa12.01□□□□□ -0.49
VPS4A-201ENST00000254950 UNC45BQ8IWX7 931 aa12.01□□□□□ -0.49
VPS4A-201ENST00000254950 CNOT10Q9H9A5 744 aaKnown RBP12.01□□□□□ -0.49
VPS4A-201ENST00000254950 ARHGAP42A6NI28 874 aa12.01□□□□□ -0.49
VPS4A-201ENST00000254950 FSCN2O14926 492 aa12.01□□□□□ -0.49
VPS4A-201ENST00000254950 NCAM2O15394 837 aa12.01□□□□□ -0.49
VPS4A-201ENST00000254950 SLC4A1P02730 911 aa12.01□□□□□ -0.49
VPS4A-201ENST00000254950 PAMP19021 973 aa12.01□□□□□ -0.49
VPS4A-201ENST00000254950 AMPD1P23109 780 aa12.01□□□□□ -0.49
VPS4A-201ENST00000254950 PSEN1P49768 467 aa12.01□□□□□ -0.49
VPS4A-201ENST00000254950 PLD1Q13393 1074 aa12.01□□□□□ -0.49
VPS4A-201ENST00000254950 FYB2Q5VWT5 728 aa12.01□□□□□ -0.49
VPS4A-201ENST00000254950 IL31Q6EBC2 164 aa12.01□□□□□ -0.49
VPS4A-201ENST00000254950 OTOP2Q7RTS6 562 aa12.01□□□□□ -0.49
VPS4A-201ENST00000254950 HDAC7Q8WUI4 952 aa12.01□□□□□ -0.49
VPS4A-201ENST00000254950 PPP1R2P1Q96PQ5 205 aa12.01□□□□□ -0.49
VPS4A-201ENST00000254950 RABEP2Q9H5N1 569 aa12.01□□□□□ -0.49
VPS4A-201ENST00000254950 CHST7Q9NS84 486 aa12.01□□□□□ -0.49
VPS4A-201ENST00000254950 MARCH2Q9P0N8 246 aa12.01□□□□□ -0.49
VPS4A-201ENST00000254950 UXTQ9UBK9 157 aaPredicted RBP12.01□□□□□ -0.49
VPS4A-201ENST00000254950 FGBP02675 491 aa12.01□□□□□ -0.49
VPS4A-201ENST00000254950 OR4Q2P0C623 313 aa12.01□□□□□ -0.49
VPS4A-201ENST00000254950 NR1H3Q13133 447 aa12.01□□□□□ -0.49
VPS4A-201ENST00000254950 VARS2Q5ST30 1063 aaKnown RBP12.01□□□□□ -0.49
VPS4A-201ENST00000254950 SYCP2LQ5T4T6 812 aa12.01□□□□□ -0.49
VPS4A-201ENST00000254950 STRADAQ7RTN6 431 aa12.01□□□□□ -0.49
VPS4A-201ENST00000254950 ANKMY2Q8IV38 441 aa12.01□□□□□ -0.49
VPS4A-201ENST00000254950 PRELID2Q8N945 189 aa12.01□□□□□ -0.49
VPS4A-201ENST00000254950 EXOC4Q96A65 974 aa12.01□□□□□ -0.49
VPS4A-201ENST00000254950 SUSD3Q96L08 255 aa12.01□□□□□ -0.49
VPS4A-201ENST00000254950 OXCT2Q9BYC2 517 aaPredicted RBP12.01□□□□□ -0.49
VPS4A-201ENST00000254950 TKTL2Q9H0I9 626 aa12.01□□□□□ -0.49
VPS4A-201ENST00000254950 PRDM16Q9HAZ2 1276 aa12.01□□□□□ -0.49
VPS4A-201ENST00000254950 NUDT5Q9UKK9 219 aa12.01□□□□□ -0.49
VPS4A-201ENST00000254950 KIAA0100Q14667 2235 aaKnown RBP12.01□□□□□ -0.49
VPS4A-201ENST00000254950 DDX3YO15523 660 aaKnown RBP12.01□□□□□ -0.49
VPS4A-201ENST00000254950 ZBTB24O43167 697 aaPredicted RBP12.01□□□□□ -0.49
VPS4A-201ENST00000254950 KRT38O76015 456 aa12.01□□□□□ -0.49
VPS4A-201ENST00000254950 NNMTP40261 264 aa12.01□□□□□ -0.49
VPS4A-201ENST00000254950 MAGEA4P43358 317 aa12.01□□□□□ -0.49
VPS4A-201ENST00000254950 NR2C2P49116 596 aa12.01□□□□□ -0.49
VPS4A-201ENST00000254950 CREMQ03060 361 aa12.01□□□□□ -0.49
VPS4A-201ENST00000254950 RABGAP1LQ5R372 815 aa12.01□□□□□ -0.49
VPS4A-201ENST00000254950 BBS12Q6ZW61 710 aa12.01□□□□□ -0.49
VPS4A-201ENST00000254950 PPM1NQ8N819 430 aa12.01□□□□□ -0.49
VPS4A-201ENST00000254950 ATAD1Q8NBU5 361 aa12.01□□□□□ -0.49
VPS4A-201ENST00000254950 RAPGEF5Q92565 580 aa12.01□□□□□ -0.49
VPS4A-201ENST00000254950 MAGEB5Q9BZ81 275 aa12.01□□□□□ -0.49
VPS4A-201ENST00000254950 GPR88Q9GZN0 384 aa12.01□□□□□ -0.49
VPS4A-201ENST00000254950 DNPEPQ9ULA0 475 aa12.01□□□□□ -0.49
VPS4A-201ENST00000254950 SLC27A5Q9Y2P5 690 aa12.01□□□□□ -0.49
VPS4A-201ENST00000254950 SLC4A7Q9Y6M7 1214 aa12.01□□□□□ -0.49
VPS4A-201ENST00000254950 SIPA1L1O43166 1804 aa12□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 22.2 ms