RNA–Protein interactions for RNA: ENST00000252444.9

LDLR-201, Transcript of low density lipoprotein receptor, humanhuman

APPRIS ALT2 TSL 1 (best)

Gene LDLR, Length 5,337 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-201ENST00000252444 DENND5BQ6ZUT9 1274 aa14.12□□□□□ -0.15
LDLR-201ENST00000252444 MON1AQ86VX9 555 aa14.12□□□□□ -0.15
LDLR-201ENST00000252444 GPR88Q9GZN0 384 aa14.12□□□□□ -0.15
LDLR-201ENST00000252444 STN1Q9H668 368 aaKnown RBP14.12□□□□□ -0.15
LDLR-201ENST00000252444 EVA1BQ9NVM1 165 aa14.12□□□□□ -0.15
LDLR-201ENST00000252444 PTPRJQ12913 1337 aa14.12□□□□□ -0.15
LDLR-201ENST00000252444 CHUKO15111 745 aa14.12□□□□□ -0.15
LDLR-201ENST00000252444 SNUPNO95149 360 aaKnown RBP14.12□□□□□ -0.15
LDLR-201ENST00000252444 TPD52P55327 224 aaPredicted RBP14.12□□□□□ -0.15
LDLR-201ENST00000252444 IRX5P78411 483 aaPredicted RBP14.12□□□□□ -0.15
LDLR-201ENST00000252444 CCDC38Q502W7 563 aa14.12□□□□□ -0.15
LDLR-201ENST00000252444 PPP1R16AQ96I34 528 aa14.12□□□□□ -0.15
LDLR-201ENST00000252444 SHANK3Q9BYB0 1731 aa14.12□□□□□ -0.15
LDLR-201ENST00000252444 DHX15O43143 795 aaKnown RBP14.12□□□□□ -0.15
LDLR-201ENST00000252444 LCA5LO95447 670 aa14.12□□□□□ -0.15
LDLR-201ENST00000252444 SAT1P21673 171 aa14.12□□□□□ -0.15
LDLR-201ENST00000252444 CYP2F1P24903 491 aa14.12□□□□□ -0.15
LDLR-201ENST00000252444 POLR2LP62875 67 aaKnown RBP14.12□□□□□ -0.15
LDLR-201ENST00000252444 STARD3Q14849 445 aa14.12□□□□□ -0.15
LDLR-201ENST00000252444 SEZ6Q53EL9 994 aa14.12□□□□□ -0.15
LDLR-201ENST00000252444 NOP9Q86U38 636 aaKnown RBP14.12□□□□□ -0.15
LDLR-201ENST00000252444 IFNLR1Q8IU57 520 aaPredicted RBP14.12□□□□□ -0.15
LDLR-201ENST00000252444 AMACRQ9UHK6 382 aa14.12□□□□□ -0.15
LDLR-201ENST00000252444 TMEM247A6NEH6 219 aa14.12□□□□□ -0.15
LDLR-201ENST00000252444 PI4K2BG5E9Z4 385 aa14.12□□□□□ -0.15
LDLR-201ENST00000252444 DDX3XO00571 662 aaKnown RBP eCLIP14.12□□□□□ -0.154e-8■□□□□ 9.1
LDLR-201ENST00000252444 CCDC22O60826 627 aa14.12□□□□□ -0.15
LDLR-201ENST00000252444 RAMP2O60895 175 aa14.12□□□□□ -0.15
LDLR-201ENST00000252444 PBX1P40424 430 aa14.12□□□□□ -0.15
LDLR-201ENST00000252444 MMEL1Q495T6 779 aa14.12□□□□□ -0.15
LDLR-201ENST00000252444 LYPLAL1Q5VWZ2 237 aa14.12□□□□□ -0.15
LDLR-201ENST00000252444 PPM1NQ8N819 430 aa14.12□□□□□ -0.15
LDLR-201ENST00000252444 PABPC5Q96DU9 382 aaKnown RBP14.12□□□□□ -0.15
LDLR-201ENST00000252444 BAG5Q9UL15 447 aa14.12□□□□□ -0.15
LDLR-201ENST00000252444 NOL3O60936 208 aaKnown RBP14.11□□□□□ -0.15
LDLR-201ENST00000252444 BAIAP3O94812 1187 aa14.11□□□□□ -0.15
LDLR-201ENST00000252444 MAP4P27816 1152 aaKnown RBP14.11□□□□□ -0.15
LDLR-201ENST00000252444 SPIRE1Q08AE8 756 aa14.11□□□□□ -0.15
LDLR-201ENST00000252444 EFEMP1Q12805 493 aa14.11□□□□□ -0.15
LDLR-201ENST00000252444 ZDHHC20Q5W0Z9 365 aa14.11□□□□□ -0.15
LDLR-201ENST00000252444 ERAP2Q6P179 960 aa14.11□□□□□ -0.15
LDLR-201ENST00000252444 TAS2R42Q7RTR8 314 aa14.11□□□□□ -0.15
LDLR-201ENST00000252444 CDR2LQ86X02 465 aaPredicted RBP14.11□□□□□ -0.15
LDLR-201ENST00000252444 PTPRN2Q92932 1015 aa14.11□□□□□ -0.15
LDLR-201ENST00000252444 SKA1Q96BD8 255 aa14.11□□□□□ -0.15
LDLR-201ENST00000252444 ZBTB45Q96K62 511 aaPredicted RBP14.11□□□□□ -0.15
LDLR-201ENST00000252444 SEPT3Q9UH03 358 aa14.11□□□□□ -0.15
LDLR-201ENST00000252444 TNRC6CQ9HCJ0 1690 aaKnown RBP14.11□□□□□ -0.15
LDLR-201ENST00000252444 PALM2-AKAP2B1ALY0 433 aaPredicted RBP14.11□□□□□ -0.15
LDLR-201ENST00000252444 HGSO14964 777 aaPredicted RBP14.11□□□□□ -0.15
LDLR-201ENST00000252444 USP17L7P0C7H9 530 aa14.11□□□□□ -0.15
LDLR-201ENST00000252444 TYK2P29597 1187 aa14.11□□□□□ -0.15
LDLR-201ENST00000252444 CTNNB1P35222 781 aa14.11□□□□□ -0.15
LDLR-201ENST00000252444 CASP5P51878 434 aa14.11□□□□□ -0.15
LDLR-201ENST00000252444 SLC7A5Q01650 507 aa14.11□□□□□ -0.15
LDLR-201ENST00000252444 TEDDM1Q5T9Z0 273 aa14.11□□□□□ -0.15
LDLR-201ENST00000252444 TRIM67Q6ZTA4 783 aa14.11□□□□□ -0.15
LDLR-201ENST00000252444 SAPCD2Q86UD0 394 aa14.11□□□□□ -0.15
LDLR-201ENST00000252444 SPATA16Q9BXB7 569 aa14.11□□□□□ -0.15
LDLR-201ENST00000252444 HACD3Q9P035 362 aa14.11□□□□□ -0.15
LDLR-201ENST00000252444 PADI3Q9ULW8 664 aa14.11□□□□□ -0.15
LDLR-201ENST00000252444 QSOX1O00391 747 aa14.11□□□□□ -0.15
LDLR-201ENST00000252444 CILPO75339 1184 aa14.11□□□□□ -0.15
LDLR-201ENST00000252444 MAGEA4P43358 317 aa14.11□□□□□ -0.15
LDLR-201ENST00000252444 SH3BGRP55822 239 aaPredicted RBP14.11□□□□□ -0.15
LDLR-201ENST00000252444 EVX2Q03828 476 aa14.11□□□□□ -0.15
LDLR-201ENST00000252444 STYXL1Q9Y6J8 313 aa14.11□□□□□ -0.15
LDLR-201ENST00000252444 H3BMM5 538 aa14.11□□□□□ -0.15
LDLR-201ENST00000252444 ZNF263O14978 683 aa14.11□□□□□ -0.15
LDLR-201ENST00000252444 ATP5BP06576 529 aaKnown RBP14.11□□□□□ -0.15
LDLR-201ENST00000252444 CLTBP09497 229 aa14.11□□□□□ -0.15
LDLR-201ENST00000252444 KCNE1P15382 129 aa14.11□□□□□ -0.15
LDLR-201ENST00000252444 ITGALP20701 1170 aa14.11□□□□□ -0.15
LDLR-201ENST00000252444 ECM1Q16610 540 aa14.11□□□□□ -0.15
LDLR-201ENST00000252444 FAM117BQ6P1L5 589 aa14.11□□□□□ -0.15
LDLR-201ENST00000252444 GIPC2Q8TF65 315 aa14.11□□□□□ -0.15
LDLR-201ENST00000252444 SMIM28A0A1B0GU29 152 aa14.11□□□□□ -0.15
LDLR-201ENST00000252444 SPANXN3Q5MJ09 141 aa14.11□□□□□ -0.15
LDLR-201ENST00000252444 OR6P1Q8NGX9 317 aa14.11□□□□□ -0.15
LDLR-201ENST00000252444 PDCD6IPQ8WUM4 868 aaKnown RBP14.11□□□□□ -0.15
LDLR-201ENST00000252444 HBS1LQ9Y450 684 aaKnown RBP14.11□□□□□ -0.15
LDLR-201ENST00000252444 ATP2C2O75185 946 aa14.1□□□□□ -0.15
LDLR-201ENST00000252444 MTA2O94776 668 aa14.1□□□□□ -0.15
LDLR-201ENST00000252444 GJB1P08034 283 aa14.1□□□□□ -0.15
LDLR-201ENST00000252444 PNMA6AP0CW24 399 aaPredicted RBP14.1□□□□□ -0.15
LDLR-201ENST00000252444 PDAP1Q13442 181 aaKnown RBP14.1□□□□□ -0.15
LDLR-201ENST00000252444 DGKZQ13574 1117 aa14.1□□□□□ -0.15
LDLR-201ENST00000252444 PRUNE1Q86TP1 453 aa14.1□□□□□ -0.15
LDLR-201ENST00000252444 BCAS4Q8TDM0 211 aa14.1□□□□□ -0.15
LDLR-201ENST00000252444 CSGALNACT1Q8TDX6 532 aa14.1□□□□□ -0.15
LDLR-201ENST00000252444 BAP1Q92560 729 aa14.1□□□□□ -0.15
LDLR-201ENST00000252444 KCTD5Q9NXV2 234 aa14.1□□□□□ -0.15
LDLR-201ENST00000252444 CNTN3Q9P232 1028 aa14.1□□□□□ -0.15
LDLR-201ENST00000252444 UBR3Q6ZT12 1888 aa14.1□□□□□ -0.15
LDLR-201ENST00000252444 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP14.1□□□□□ -0.15
LDLR-201ENST00000252444 USP27XA6NNY8 438 aa14.1□□□□□ -0.15
LDLR-201ENST00000252444 IRF1P10914 325 aa14.1□□□□□ -0.15
LDLR-201ENST00000252444 RARGP13631 454 aa14.1□□□□□ -0.15
LDLR-201ENST00000252444 ABCE1P61221 599 aaKnown RBP14.1□□□□□ -0.15
LDLR-201ENST00000252444 NOMO3P69849 1222 aa14.1□□□□□ -0.15
Retrieved 100 of 20,778 RNA–protein pairs in 46.9 ms