RNA–Protein interactions for RNA: ENST00000249440.4

HOXD3-201, Transcript of homeobox D3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HOXD3, Length 2,303 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD3-201ENST00000249440 ZDHHC17Q8IUH5 632 aa17.03■□□□□ 0.32
HOXD3-201ENST00000249440 CDKL3Q8IVW4 592 aaPredicted RBP17.03■□□□□ 0.32
HOXD3-201ENST00000249440 TRIM42Q8IWZ5 723 aa17.03■□□□□ 0.32
HOXD3-201ENST00000249440 SKA1Q96BD8 255 aa17.03■□□□□ 0.32
HOXD3-201ENST00000249440 BTBD10Q9BSF8 475 aa17.03■□□□□ 0.32
HOXD3-201ENST00000249440 HESX1Q9UBX0 185 aa17.03■□□□□ 0.32
HOXD3-201ENST00000249440 NKX1-2Q9UD57 310 aaPredicted RBP17.03■□□□□ 0.32
HOXD3-201ENST00000249440 PLXNA1Q9UIW2 1896 aa17.03■□□□□ 0.32
HOXD3-201ENST00000249440 SCN1AP35498 2009 aa17.03■□□□□ 0.32
HOXD3-201ENST00000249440 SLC15A5A6NIM6 579 aa17.03■□□□□ 0.32
HOXD3-201ENST00000249440 TSPAN1O60635 241 aa17.03■□□□□ 0.32
HOXD3-201ENST00000249440 KRT38O76015 456 aa17.03■□□□□ 0.32
HOXD3-201ENST00000249440 TOMM70O94826 608 aa17.03■□□□□ 0.32
HOXD3-201ENST00000249440 APOEP02649 317 aa17.03■□□□□ 0.32
HOXD3-201ENST00000249440 GNAZP19086 355 aa17.03■□□□□ 0.32
HOXD3-201ENST00000249440 CA9Q16790 459 aa17.03■□□□□ 0.32
HOXD3-201ENST00000249440 TTC30AQ86WT1 665 aa17.03■□□□□ 0.32
HOXD3-201ENST00000249440 ANKRD13AQ8IZ07 590 aa17.03■□□□□ 0.32
HOXD3-201ENST00000249440 VPS52Q8N1B4 723 aa17.03■□□□□ 0.32
HOXD3-201ENST00000249440 ENDOVQ8N8Q3 282 aaKnown RBP17.03■□□□□ 0.32
HOXD3-201ENST00000249440 SLC35F5Q8WV83 523 aa17.03■□□□□ 0.32
HOXD3-201ENST00000249440 KHSRPQ92945 711 aaKnown RBP eCLIP17.03■□□□□ 0.32
HOXD3-201ENST00000249440 NSL1Q96IY1 281 aa17.03■□□□□ 0.32
HOXD3-201ENST00000249440 CLMNQ96JQ2 1002 aa17.03■□□□□ 0.32
HOXD3-201ENST00000249440 CENPFP49454 3210 aa17.03■□□□□ 0.32
HOXD3-201ENST00000249440 COL1A2P08123 1366 aa17.02■□□□□ 0.32
HOXD3-201ENST00000249440 SPDYE5A6NIY4 337 aa17.02■□□□□ 0.32
HOXD3-201ENST00000249440 CXorf49A8MYA2 514 aaPredicted RBP17.02■□□□□ 0.32
HOXD3-201ENST00000249440 MAP3K6O95382 1288 aa17.02■□□□□ 0.32
HOXD3-201ENST00000249440 LMNAP02545 664 aaKnown RBP17.02■□□□□ 0.32
HOXD3-201ENST00000249440 TPBGLP0DKB5 382 aa17.02■□□□□ 0.32
HOXD3-201ENST00000249440 GM2AP17900 193 aa17.02■□□□□ 0.32
HOXD3-201ENST00000249440 FAM182AQ5T1J6 154 aa17.02■□□□□ 0.32
HOXD3-201ENST00000249440 ARMCX2Q7L311 632 aa17.02■□□□□ 0.32
HOXD3-201ENST00000249440 ACOT1Q86TX2 421 aa17.02■□□□□ 0.32
HOXD3-201ENST00000249440 CCDC110Q8TBZ0 833 aa17.02■□□□□ 0.32
HOXD3-201ENST00000249440 MIEF2Q96C03 454 aa17.02■□□□□ 0.32
HOXD3-201ENST00000249440 MTBPQ96DY7 904 aa17.02■□□□□ 0.32
HOXD3-201ENST00000249440 DENND2DQ9H6A0 471 aaPredicted RBP17.02■□□□□ 0.32
HOXD3-201ENST00000249440 NRDE2Q9H7Z3 1164 aa17.02■□□□□ 0.32
HOXD3-201ENST00000249440 PLLPQ9Y342 182 aa17.02■□□□□ 0.32
HOXD3-201ENST00000249440 SNX9Q9Y5X1 595 aa17.02■□□□□ 0.32
HOXD3-201ENST00000249440 I3L4J1 428 aa17.02■□□□□ 0.31
HOXD3-201ENST00000249440 ZFXP17010 805 aaPredicted RBP17.02■□□□□ 0.31
HOXD3-201ENST00000249440 HDAC4P56524 1084 aa17.02■□□□□ 0.31
HOXD3-201ENST00000249440 MTHFD1LQ6UB35 978 aa17.02■□□□□ 0.31
HOXD3-201ENST00000249440 CDHR3Q6ZTQ4 885 aa17.02■□□□□ 0.31
HOXD3-201ENST00000249440 PTCD3Q96EY7 689 aaKnown RBP17.02■□□□□ 0.31
HOXD3-201ENST00000249440 MRPL45Q9BRJ2 306 aaKnown RBP17.02■□□□□ 0.31
HOXD3-201ENST00000249440 ARL8BQ9NVJ2 186 aa17.02■□□□□ 0.31
HOXD3-201ENST00000249440 KCNH4Q9UQ05 1017 aa17.02■□□□□ 0.31
HOXD3-201ENST00000249440 A6NJR5 290 aa17.01■□□□□ 0.31
HOXD3-201ENST00000249440 PAPSS1O43252 624 aaPredicted RBP17.01■□□□□ 0.31
HOXD3-201ENST00000249440 GCATO75600 419 aa17.01■□□□□ 0.31
HOXD3-201ENST00000249440 MYL2P10916 166 aa17.01■□□□□ 0.31
HOXD3-201ENST00000249440 CYP2F1P24903 491 aa17.01■□□□□ 0.31
HOXD3-201ENST00000249440 GRM5P41594 1212 aa17.01■□□□□ 0.31
HOXD3-201ENST00000249440 KRT72Q14CN4 511 aa17.01■□□□□ 0.31
HOXD3-201ENST00000249440 ATG16L1Q676U5 607 aa17.01■□□□□ 0.31
HOXD3-201ENST00000249440 UNC5AQ6ZN44 842 aa17.01■□□□□ 0.31
HOXD3-201ENST00000249440 MIPEPQ99797 713 aa17.01■□□□□ 0.31
HOXD3-201ENST00000249440 CADM1Q9BY67 442 aaKnown RBP17.01■□□□□ 0.31
HOXD3-201ENST00000249440 DCLRE1BQ9H816 532 aa17.01■□□□□ 0.31
HOXD3-201ENST00000249440 FAM49BQ9NUQ9 324 aa17.01■□□□□ 0.31
HOXD3-201ENST00000249440 MKS1Q9NXB0 559 aa17.01■□□□□ 0.31
HOXD3-201ENST00000249440 GYG2O15488 501 aa17.01■□□□□ 0.31
HOXD3-201ENST00000249440 TPSB2P20231 275 aa17.01■□□□□ 0.31
HOXD3-201ENST00000249440 MAGEA3P43357 314 aa17.01■□□□□ 0.31
HOXD3-201ENST00000249440 NR2C2P49116 596 aa17.01■□□□□ 0.31
HOXD3-201ENST00000249440 TPSAB1Q15661 275 aa17.01■□□□□ 0.31
HOXD3-201ENST00000249440 DPYSL2Q16555 572 aa17.01■□□□□ 0.31
HOXD3-201ENST00000249440 GJC2Q5T442 439 aaPredicted RBP17.01■□□□□ 0.31
HOXD3-201ENST00000249440 C4orf50Q6ZRC1 276 aa17.01■□□□□ 0.31
HOXD3-201ENST00000249440 BZW1Q7L1Q6 419 aaKnown RBP17.01■□□□□ 0.31
HOXD3-201ENST00000249440 FASTKD5Q7L8L6 764 aaKnown RBP17.01■□□□□ 0.31
HOXD3-201ENST00000249440 PPTC7Q8NI37 304 aa17.01■□□□□ 0.31
HOXD3-201ENST00000249440 GSDMBQ8TAX9 411 aa17.01■□□□□ 0.31
HOXD3-201ENST00000249440 OXNAD1Q96HP4 312 aaPredicted RBP17.01■□□□□ 0.31
HOXD3-201ENST00000249440 C7orf26Q96N11 449 aa17.01■□□□□ 0.31
HOXD3-201ENST00000249440 PLEKHA5Q9HAU0 1116 aa17.01■□□□□ 0.31
HOXD3-201ENST00000249440 PLAC1Q9HBJ0 212 aa17.01■□□□□ 0.31
HOXD3-201ENST00000249440 FBXO6Q9NRD1 293 aaPredicted RBP17.01■□□□□ 0.31
HOXD3-201ENST00000249440 SCN4AP35499 1836 aa17■□□□□ 0.31
HOXD3-201ENST00000249440 ENTPD5O75356 428 aa17■□□□□ 0.31
HOXD3-201ENST00000249440 RFPL1O75677 317 aa17■□□□□ 0.31
HOXD3-201ENST00000249440 PTPN9P43378 593 aa17■□□□□ 0.31
HOXD3-201ENST00000249440 TAF11Q15544 211 aa17■□□□□ 0.31
HOXD3-201ENST00000249440 KCNV2Q8TDN2 545 aa17■□□□□ 0.31
HOXD3-201ENST00000249440 SIGLEC10Q96LC7 697 aa17■□□□□ 0.31
HOXD3-201ENST00000249440 EBNA1BP2Q99848 306 aaKnown RBP17■□□□□ 0.31
HOXD3-201ENST00000249440 B3GNT5Q9BYG0 378 aa17■□□□□ 0.31
HOXD3-201ENST00000249440 SLC13A1Q9BZW2 595 aa17■□□□□ 0.31
HOXD3-201ENST00000249440 SMYD2Q9NRG4 433 aa17■□□□□ 0.31
HOXD3-201ENST00000249440 DERAQ9Y315 318 aa17■□□□□ 0.31
HOXD3-201ENST00000249440 MAD1L1Q9Y6D9 718 aa17■□□□□ 0.31
HOXD3-201ENST00000249440 GSC2O15499 205 aa16.99■□□□□ 0.31
HOXD3-201ENST00000249440 LUC7L3O95232 432 aaKnown RBP16.99■□□□□ 0.31
HOXD3-201ENST00000249440 METTL18O95568 372 aa16.99■□□□□ 0.31
HOXD3-201ENST00000249440 ESRRAP11474 423 aaPredicted RBP16.99■□□□□ 0.31
HOXD3-201ENST00000249440 L1CAMP32004 1257 aa16.99■□□□□ 0.31
Retrieved 100 of 20,778 RNA–protein pairs in 63.5 ms