RNA–Protein interactions for RNA: ENST00000639002.1

CD44-239, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 1 (best) BASIC

Gene CD44, Length 528 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-239ENST00000639002 CLIC1O00299 241 aa5.04□□□□□ -1.6
CD44-239ENST00000639002 TMPRSS11DO60235 418 aa5.04□□□□□ -1.6
CD44-239ENST00000639002 HRGP04196 525 aa5.04□□□□□ -1.6
CD44-239ENST00000639002 STK3Q13188 491 aa5.04□□□□□ -1.6
CD44-239ENST00000639002 SLC14A1Q13336 389 aa5.04□□□□□ -1.6
CD44-239ENST00000639002 CYB5RLQ6IPT4 315 aa5.04□□□□□ -1.6
CD44-239ENST00000639002 UNC13DQ70J99 1090 aa5.04□□□□□ -1.6
CD44-239ENST00000639002 MRPL10Q7Z7H8 261 aaKnown RBP5.04□□□□□ -1.6
CD44-239ENST00000639002 C12orf76Q8N812 135 aaPredicted RBP5.04□□□□□ -1.6
CD44-239ENST00000639002 WIPF2Q8TF74 440 aaPredicted RBP5.04□□□□□ -1.6
CD44-239ENST00000639002 SEMA5BQ9P283 1151 aa5.04□□□□□ -1.6
CD44-239ENST00000639002 A8MVJ9 347 aa5.03□□□□□ -1.6
CD44-239ENST00000639002 TPP1O14773 563 aa5.03□□□□□ -1.6
CD44-239ENST00000639002 TLR2O60603 784 aa5.03□□□□□ -1.6
CD44-239ENST00000639002 MBPP02686 304 aaPredicted RBP5.03□□□□□ -1.6
CD44-239ENST00000639002 MTHFSP49914 203 aa5.03□□□□□ -1.6
CD44-239ENST00000639002 CACNB3P54284 484 aa5.03□□□□□ -1.6
CD44-239ENST00000639002 GPC5P78333 572 aa5.03□□□□□ -1.6
CD44-239ENST00000639002 ZNF91Q05481 1191 aa5.03□□□□□ -1.6
CD44-239ENST00000639002 KCNB1Q14721 858 aa5.03□□□□□ -1.6
CD44-239ENST00000639002 GRM3Q14832 879 aa5.03□□□□□ -1.6
CD44-239ENST00000639002 POLD3Q15054 466 aaPredicted RBP5.03□□□□□ -1.6
CD44-239ENST00000639002 MANEALQ5VSG8 457 aa5.03□□□□□ -1.6
CD44-239ENST00000639002 ZNF517Q6ZMY9 492 aaPredicted RBP5.03□□□□□ -1.6
CD44-239ENST00000639002 DEF8Q6ZN54 512 aa5.03□□□□□ -1.6
CD44-239ENST00000639002 PRR11Q96HE9 360 aaPredicted RBP5.03□□□□□ -1.6
CD44-239ENST00000639002 MSLNLQ96KJ4 702 aa5.03□□□□□ -1.6
CD44-239ENST00000639002 SELENOOQ9BVL4 669 aa5.03□□□□□ -1.6
CD44-239ENST00000639002 LRRC27Q9C0I9 530 aa5.03□□□□□ -1.6
CD44-239ENST00000639002 FAM204AQ9H8W3 233 aa5.03□□□□□ -1.6
CD44-239ENST00000639002 NKX1-2Q9UD57 310 aaPredicted RBP5.03□□□□□ -1.6
CD44-239ENST00000639002 FZD4Q9ULV1 537 aa5.03□□□□□ -1.6
CD44-239ENST00000639002 SLC27A6Q9Y2P4 619 aa5.03□□□□□ -1.6
CD44-239ENST00000639002 F8W8V4 182 aa5.02□□□□□ -1.61
CD44-239ENST00000639002 FYB1O15117 783 aa5.02□□□□□ -1.61
CD44-239ENST00000639002 PRAMEF2O60811 474 aa5.02□□□□□ -1.61
CD44-239ENST00000639002 CNOT3O75175 753 aaKnown RBP5.02□□□□□ -1.61
CD44-239ENST00000639002 MAP4K4O95819 1239 aaPredicted RBP5.02□□□□□ -1.61
CD44-239ENST00000639002 ZBED1O96006 694 aa5.02□□□□□ -1.61
CD44-239ENST00000639002 CYP19A1P11511 503 aaPredicted RBP5.02□□□□□ -1.61
CD44-239ENST00000639002 TPH1P17752 444 aa5.02□□□□□ -1.61
CD44-239ENST00000639002 HTR7P34969 479 aa5.02□□□□□ -1.61
CD44-239ENST00000639002 COPAP53621 1224 aa5.02□□□□□ -1.61
CD44-239ENST00000639002 YPEL5P62699 121 aa5.02□□□□□ -1.61
CD44-239ENST00000639002 SRSF1Q07955 248 aaKnown RBP eCLIP5.02□□□□□ -1.61
CD44-239ENST00000639002 MFSD13AQ14CX5 517 aa5.02□□□□□ -1.61
CD44-239ENST00000639002 LEXMQ3ZCV2 418 aa5.02□□□□□ -1.61
CD44-239ENST00000639002 DENND2CQ68D51 928 aa5.02□□□□□ -1.61
CD44-239ENST00000639002 GRHL2Q6ISB3 625 aa5.02□□□□□ -1.61
CD44-239ENST00000639002 CLEC9AQ6UXN8 241 aa5.02□□□□□ -1.61
CD44-239ENST00000639002 CCDC149Q6ZUS6 474 aa5.02□□□□□ -1.61
CD44-239ENST00000639002 PNPLA1Q8N8W4 532 aa5.02□□□□□ -1.61
CD44-239ENST00000639002 HIST1H2AAQ96QV6 131 aa5.02□□□□□ -1.61
CD44-239ENST00000639002 FAM83DQ9H4H8 585 aa5.02□□□□□ -1.61
CD44-239ENST00000639002 ZNF287Q9HBT7 754 aa5.02□□□□□ -1.61
CD44-239ENST00000639002 MLXIPLQ9NP71 852 aa5.02□□□□□ -1.61
CD44-239ENST00000639002 HEY2Q9UBP5 337 aa5.02□□□□□ -1.61
CD44-239ENST00000639002 ITGB1BP2Q9UKP3 347 aa5.02□□□□□ -1.61
CD44-239ENST00000639002 OGDHLQ9ULD0 1010 aa5.02□□□□□ -1.61
CD44-239ENST00000639002 AQP7P3A6NL99 342 aa5.01□□□□□ -1.61
CD44-239ENST00000639002 C16orf96A6NNT2 1141 aa5.01□□□□□ -1.61
CD44-239ENST00000639002 IKBKBO14920 756 aa5.01□□□□□ -1.61
CD44-239ENST00000639002 CA12O43570 354 aa5.01□□□□□ -1.61
CD44-239ENST00000639002 TSPAN6O43657 245 aa5.01□□□□□ -1.61
CD44-239ENST00000639002 MT-ND5P03915 603 aa5.01□□□□□ -1.61
CD44-239ENST00000639002 CTSAP10619 480 aa5.01□□□□□ -1.61
CD44-239ENST00000639002 MTAPQ13126 283 aa5.01□□□□□ -1.61
CD44-239ENST00000639002 TWIST1Q15672 202 aa5.01□□□□□ -1.61
CD44-239ENST00000639002 KIAA0753Q2KHM9 967 aa5.01□□□□□ -1.61
CD44-239ENST00000639002 TMEM63BQ5T3F8 832 aa5.01□□□□□ -1.61
CD44-239ENST00000639002 SRGAP1Q7Z6B7 1085 aa5.01□□□□□ -1.61
CD44-239ENST00000639002 YAF2Q8IY57 180 aa5.01□□□□□ -1.61
CD44-239ENST00000639002 SAMD14Q8IZD0 417 aaPredicted RBP5.01□□□□□ -1.61
CD44-239ENST00000639002 HS6ST2Q96MM7 605 aa5.01□□□□□ -1.61
CD44-239ENST00000639002 VPS45Q9NRW7 570 aa5.01□□□□□ -1.61
CD44-239ENST00000639002 DNAJB11Q9UBS4 358 aa5.01□□□□□ -1.61
CD44-239ENST00000639002 COL15A1P39059 1388 aa5.01□□□□□ -1.61
CD44-239ENST00000639002 ZMYM2Q9UBW7 1377 aa5.01□□□□□ -1.61
CD44-239ENST00000639002 LOC105371045A0A1W2PR82 267 aa5□□□□□ -1.61
CD44-239ENST00000639002 GOLIM4O00461 696 aa5□□□□□ -1.61
CD44-239ENST00000639002 INSIG1O15503 277 aa5□□□□□ -1.61
CD44-239ENST00000639002 TMEM191BP0C7N4 346 aa5□□□□□ -1.61
CD44-239ENST00000639002 CD19P15391 556 aa5□□□□□ -1.61
CD44-239ENST00000639002 ADRA1DP25100 572 aa5□□□□□ -1.61
CD44-239ENST00000639002 PEX2P28328 305 aa5□□□□□ -1.61
CD44-239ENST00000639002 CARSP49589 748 aaKnown RBP5□□□□□ -1.61
CD44-239ENST00000639002 PLCD1P51178 756 aa5□□□□□ -1.61
CD44-239ENST00000639002 POLGP54098 1239 aaPredicted RBP5□□□□□ -1.61
CD44-239ENST00000639002 GBX1Q14549 363 aa5□□□□□ -1.61
CD44-239ENST00000639002 DARS2Q6PI48 645 aaKnown RBP5□□□□□ -1.61
CD44-239ENST00000639002 VSTM1Q6UX27 236 aa5□□□□□ -1.61
CD44-239ENST00000639002 ZNF548Q8NEK5 533 aaPredicted RBP5□□□□□ -1.61
CD44-239ENST00000639002 JDP2Q8WYK2 163 aa5□□□□□ -1.61
CD44-239ENST00000639002 CUL5Q93034 780 aa5□□□□□ -1.61
CD44-239ENST00000639002 ZDHHC12Q96GR4 267 aa5□□□□□ -1.61
CD44-239ENST00000639002 ZNF668Q96K58 619 aaPredicted RBP5□□□□□ -1.61
CD44-239ENST00000639002 FOXP1Q9H334 677 aaPredicted RBP5□□□□□ -1.61
CD44-239ENST00000639002 USP29Q9HBJ7 922 aa5□□□□□ -1.61
CD44-239ENST00000639002 STEAP1Q9UHE8 339 aa5□□□□□ -1.61
CD44-239ENST00000639002 LOC105378220A0A1B0GUY1 285 aaPredicted RBP4.99□□□□□ -1.61
Retrieved 100 of 20,778 RNA–protein pairs in 40 ms