RNA–Protein interactions for RNA: ENST00000637110.1

CLN3-257, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 565 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-257ENST00000637110 NFATC1O95644 943 aa12.27□□□□□ -0.45
CLN3-257ENST00000637110 FGFR1OPO95684 399 aaKnown RBP12.27□□□□□ -0.45
CLN3-257ENST00000637110 CD19P15391 556 aa12.27□□□□□ -0.45
CLN3-257ENST00000637110 SPINK2P20155 84 aa12.27□□□□□ -0.45
CLN3-257ENST00000637110 ACO1P21399 889 aaKnown RBP12.27□□□□□ -0.45
CLN3-257ENST00000637110 BMP6P22004 513 aa12.27□□□□□ -0.45
CLN3-257ENST00000637110 FMO5P49326 533 aa12.27□□□□□ -0.45
CLN3-257ENST00000637110 SLC8A3P57103 927 aa12.27□□□□□ -0.45
CLN3-257ENST00000637110 YWHAEP62258 255 aaKnown RBP12.27□□□□□ -0.45
CLN3-257ENST00000637110 SLC7A9P82251 487 aa12.27□□□□□ -0.45
CLN3-257ENST00000637110 PPP1R26Q5T8A7 1209 aaPredicted RBP12.27□□□□□ -0.45
CLN3-257ENST00000637110 TTI2Q6NXR4 508 aa12.27□□□□□ -0.45
CLN3-257ENST00000637110 CLEC20AQ6ZU45 233 aa12.27□□□□□ -0.45
CLN3-257ENST00000637110 DDX42Q86XP3 938 aaKnown RBP eCLIP12.27□□□□□ -0.45
CLN3-257ENST00000637110 SYNPOQ8N3V7 929 aa12.27□□□□□ -0.45
CLN3-257ENST00000637110 TRIML1Q8N9V2 468 aa12.27□□□□□ -0.45
CLN3-257ENST00000637110 ZMIZ2Q8NF64 920 aa12.27□□□□□ -0.45
CLN3-257ENST00000637110 WHAMMQ8TF30 809 aa12.27□□□□□ -0.45
CLN3-257ENST00000637110 SLC35C1Q96A29 364 aa12.27□□□□□ -0.45
CLN3-257ENST00000637110 FAXDC2Q96IV6 333 aa12.27□□□□□ -0.45
CLN3-257ENST00000637110 NT5C1BQ96P26 610 aa12.27□□□□□ -0.45
CLN3-257ENST00000637110 DUSP9Q99956 384 aaKnown RBP12.27□□□□□ -0.45
CLN3-257ENST00000637110 SCNM1Q9BWG6 230 aa12.27□□□□□ -0.45
CLN3-257ENST00000637110 LINC00597Q9H2U6 94 aa12.27□□□□□ -0.45
CLN3-257ENST00000637110 TLR8Q9NR97 1041 aaKnown RBP12.27□□□□□ -0.45
CLN3-257ENST00000637110 KIAA1468Q9P260 1216 aa12.27□□□□□ -0.45
CLN3-257ENST00000637110 SH3BP1Q9Y3L3 701 aa12.27□□□□□ -0.45
CLN3-257ENST00000637110 FLNBO75369 2602 aaKnown RBP12.27□□□□□ -0.45
CLN3-257ENST00000637110 WDFY3Q8IZQ1 3526 aa12.27□□□□□ -0.45
CLN3-257ENST00000637110 KIF26AQ9ULI4 1882 aaPredicted RBP12.27□□□□□ -0.45
CLN3-257ENST00000637110 ANAPC1Q9H1A4 1944 aa12.27□□□□□ -0.45
CLN3-257ENST00000637110 OTOL1A6NHN0 477 aaPredicted RBP12.26□□□□□ -0.45
CLN3-257ENST00000637110 SLC9A3R1O14745 358 aaPredicted RBP12.26□□□□□ -0.45
CLN3-257ENST00000637110 GIPC1O14908 333 aa12.26□□□□□ -0.45
CLN3-257ENST00000637110 COCHO43405 550 aa12.26□□□□□ -0.45
CLN3-257ENST00000637110 GNA14O95837 355 aa12.26□□□□□ -0.45
CLN3-257ENST00000637110 OAS1P00973 400 aaKnown RBP12.26□□□□□ -0.45
CLN3-257ENST00000637110 IRF1P10914 325 aa12.26□□□□□ -0.45
CLN3-257ENST00000637110 CEACAM1P13688 526 aa12.26□□□□□ -0.45
CLN3-257ENST00000637110 TBXAS1P24557 533 aaPredicted RBP12.26□□□□□ -0.45
CLN3-257ENST00000637110 GJA4P35212 333 aa12.26□□□□□ -0.45
CLN3-257ENST00000637110 GALK1P51570 392 aa12.26□□□□□ -0.45
CLN3-257ENST00000637110 CUL2Q13617 745 aa12.26□□□□□ -0.45
CLN3-257ENST00000637110 TPD52L1Q16890 204 aaPredicted RBP12.26□□□□□ -0.45
CLN3-257ENST00000637110 EML3Q32P44 896 aa12.26□□□□□ -0.45
CLN3-257ENST00000637110 SH3PXD2AQ5TCZ1 1133 aa12.26□□□□□ -0.45
CLN3-257ENST00000637110 Q6ZS52 159 aa12.26□□□□□ -0.45
CLN3-257ENST00000637110 KBTBD6Q86V97 674 aa12.26□□□□□ -0.45
CLN3-257ENST00000637110 P2RY13Q9BPV8 354 aa12.26□□□□□ -0.45
CLN3-257ENST00000637110 DUSP16Q9BY84 665 aa12.26□□□□□ -0.45
CLN3-257ENST00000637110 CCSER2Q9H7U1 834 aa12.26□□□□□ -0.45
CLN3-257ENST00000637110 CSNK1G1Q9HCP0 422 aa12.26□□□□□ -0.45
CLN3-257ENST00000637110 LAMA1P25391 3075 aa12.26□□□□□ -0.45
CLN3-257ENST00000637110 NBEAQ8NFP9 2946 aa12.25□□□□□ -0.45
CLN3-257ENST00000637110 C4orf47A7E2U8 309 aa12.25□□□□□ -0.45
CLN3-257ENST00000637110 TLR5O60602 858 aa12.25□□□□□ -0.45
CLN3-257ENST00000637110 TCF3P15923 654 aa12.25□□□□□ -0.45
CLN3-257ENST00000637110 CSRP1P21291 193 aaKnown RBP12.25□□□□□ -0.45
CLN3-257ENST00000637110 RAD23BP54727 409 aa12.25□□□□□ -0.45
CLN3-257ENST00000637110 MCCD1P59942 119 aaPredicted RBP12.25□□□□□ -0.45
CLN3-257ENST00000637110 ELF2Q15723 593 aa12.25□□□□□ -0.45
CLN3-257ENST00000637110 FSTL4Q6MZW2 842 aa12.25□□□□□ -0.45
CLN3-257ENST00000637110 GPRIN1Q7Z2K8 1008 aa12.25□□□□□ -0.45
CLN3-257ENST00000637110 PPM1KQ8N3J5 372 aa12.25□□□□□ -0.45
CLN3-257ENST00000637110 SLC4A11Q8NBS3 891 aa12.25□□□□□ -0.45
CLN3-257ENST00000637110 CD101Q93033 1021 aa12.25□□□□□ -0.45
CLN3-257ENST00000637110 CHFRQ96EP1 664 aa12.25□□□□□ -0.45
CLN3-257ENST00000637110 ZC3H10Q96K80 434 aaKnown RBP12.25□□□□□ -0.45
CLN3-257ENST00000637110 SMOC1Q9H4F8 434 aa12.25□□□□□ -0.45
CLN3-257ENST00000637110 IL37Q9NZH6 218 aa12.25□□□□□ -0.45
CLN3-257ENST00000637110 HESX1Q9UBX0 185 aa12.25□□□□□ -0.45
CLN3-257ENST00000637110 NAGPAQ9UK23 515 aa12.25□□□□□ -0.45
CLN3-257ENST00000637110 SCML2Q9UQR0 700 aa12.25□□□□□ -0.45
CLN3-257ENST00000637110 COQ4Q9Y3A0 265 aa12.25□□□□□ -0.45
CLN3-257ENST00000637110 NEUROG3Q9Y4Z2 214 aa12.25□□□□□ -0.45
CLN3-257ENST00000637110 PCDHB4Q9Y5E5 795 aa12.25□□□□□ -0.45
CLN3-257ENST00000637110 UTP18Q9Y5J1 556 aaKnown RBP eCLIP12.25□□□□□ -0.45
CLN3-257ENST00000637110 DMXL2Q8TDJ6 3036 aa12.24□□□□□ -0.45
CLN3-257ENST00000637110 TRDMT1O14717 391 aaKnown RBP12.24□□□□□ -0.45
CLN3-257ENST00000637110 CYP26A1O43174 497 aa12.24□□□□□ -0.45
CLN3-257ENST00000637110 ATG13O75143 517 aa12.24□□□□□ -0.45
CLN3-257ENST00000637110 OLFM2O95897 454 aa12.24□□□□□ -0.45
CLN3-257ENST00000637110 EGFP01133 1207 aa12.24□□□□□ -0.45
CLN3-257ENST00000637110 AFPP02771 609 aaKnown RBP12.24□□□□□ -0.45
CLN3-257ENST00000637110 RALAP11233 206 aa12.24□□□□□ -0.45
CLN3-257ENST00000637110 RARGP13631 454 aa12.24□□□□□ -0.45
CLN3-257ENST00000637110 DRD1P21728 446 aa12.24□□□□□ -0.45
CLN3-257ENST00000637110 ATP5C1P36542 298 aaKnown RBP12.24□□□□□ -0.45
CLN3-257ENST00000637110 TUBP50607 506 aa12.24□□□□□ -0.45
CLN3-257ENST00000637110 ZXDBP98169 803 aa12.24□□□□□ -0.45
CLN3-257ENST00000637110 GOLGA8FQ08AF8 430 aa12.24□□□□□ -0.45
CLN3-257ENST00000637110 GOLGA8DPQ0D2H9 430 aa12.24□□□□□ -0.45
CLN3-257ENST00000637110 KCNH2Q12809 1159 aa12.24□□□□□ -0.45
CLN3-257ENST00000637110 GOLGA7BQ2TAP0 167 aa12.24□□□□□ -0.45
CLN3-257ENST00000637110 SGO2Q562F6 1265 aa12.24□□□□□ -0.45
CLN3-257ENST00000637110 TMEM196Q5HYL7 178 aa12.24□□□□□ -0.45
CLN3-257ENST00000637110 TMEM270Q6UE05 265 aa12.24□□□□□ -0.45
CLN3-257ENST00000637110 TADA2BQ86TJ2 420 aa12.24□□□□□ -0.45
CLN3-257ENST00000637110 FAM124BQ9H5Z6 455 aaPredicted RBP12.24□□□□□ -0.45
CLN3-257ENST00000637110 TBC1D14Q9P2M4 693 aa12.24□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 38.7 ms