RNA–Protein interactions for RNA: ENST00000636685.1

CLN3-249, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 801 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-249ENST00000636685 NOP14P78316 857 aaKnown RBP15.47■□□□□ 0.07
CLN3-249ENST00000636685 LY6DQ14210 128 aa15.47■□□□□ 0.07
CLN3-249ENST00000636685 SOWAHAQ2M3V2 549 aa15.47■□□□□ 0.07
CLN3-249ENST00000636685 LAYNQ6UX15 382 aa15.47■□□□□ 0.07
CLN3-249ENST00000636685 TOP6BLQ8N6T0 577 aa15.47■□□□□ 0.07
CLN3-249ENST00000636685 SNX19Q92543 992 aa15.47■□□□□ 0.07
CLN3-249ENST00000636685 TMEM176AQ96HP8 235 aa15.47■□□□□ 0.07
CLN3-249ENST00000636685 CEP295NLQ96MC4 621 aa15.47■□□□□ 0.07
CLN3-249ENST00000636685 REEP2Q9BRK0 252 aa15.47■□□□□ 0.07
CLN3-249ENST00000636685 IKZF4Q9H2S9 585 aa15.47■□□□□ 0.07
CLN3-249ENST00000636685 FOXP1Q9H334 677 aaPredicted RBP15.47■□□□□ 0.07
CLN3-249ENST00000636685 GDAP2Q9NXN4 497 aa15.47■□□□□ 0.07
CLN3-249ENST00000636685 EHD2Q9NZN4 543 aa15.47■□□□□ 0.07
CLN3-249ENST00000636685 KCND2Q9NZV8 630 aa15.47■□□□□ 0.07
CLN3-249ENST00000636685 ANKRD6Q9Y2G4 727 aa15.47■□□□□ 0.07
CLN3-249ENST00000636685 USP9XQ93008 2570 aaPredicted RBP15.47■□□□□ 0.07
CLN3-249ENST00000636685 NEDD8-MDP1E9PL57 170 aa15.46■□□□□ 0.07
CLN3-249ENST00000636685 GFRA2O00451 464 aa15.46■□□□□ 0.07
CLN3-249ENST00000636685 SLC28A2O43868 658 aa15.46■□□□□ 0.07
CLN3-249ENST00000636685 PCDHGA12O60330 932 aa15.46■□□□□ 0.07
CLN3-249ENST00000636685 BRINP1O60477 761 aa15.46■□□□□ 0.07
CLN3-249ENST00000636685 IL18RAPO95256 599 aa15.46■□□□□ 0.07
CLN3-249ENST00000636685 IRF1P10914 325 aa15.46■□□□□ 0.07
CLN3-249ENST00000636685 OXTRP30559 389 aa15.46■□□□□ 0.07
CLN3-249ENST00000636685 CCT8P50990 548 aa15.46■□□□□ 0.07
CLN3-249ENST00000636685 CACNA2D1P54289 1103 aa15.46■□□□□ 0.07
CLN3-249ENST00000636685 TDRD10Q5VZ19 366 aaKnown RBP15.46■□□□□ 0.07
CLN3-249ENST00000636685 USP49Q70CQ1 688 aa15.46■□□□□ 0.07
CLN3-249ENST00000636685 NT5DC4Q86YG4 428 aa15.46■□□□□ 0.07
CLN3-249ENST00000636685 CSGALNACT2Q8N6G5 542 aa15.46■□□□□ 0.07
CLN3-249ENST00000636685 CXorf38Q8TB03 319 aa15.46■□□□□ 0.07
CLN3-249ENST00000636685 WBP1Q96G27 269 aa15.46■□□□□ 0.07
CLN3-249ENST00000636685 NRSN2Q9GZP1 204 aa15.46■□□□□ 0.07
CLN3-249ENST00000636685 CDH9Q9ULB4 789 aa15.46■□□□□ 0.07
CLN3-249ENST00000636685 PCDHGA1Q9Y5H4 931 aa15.46■□□□□ 0.07
CLN3-249ENST00000636685 STON1Q9Y6Q2 735 aa15.46■□□□□ 0.07
CLN3-249ENST00000636685 CKAP5Q14008 2032 aa15.46■□□□□ 0.07
CLN3-249ENST00000636685 ENC1O14682 589 aa15.45■□□□□ 0.06
CLN3-249ENST00000636685 EPB41L2O43491 1005 aaKnown RBP15.45■□□□□ 0.06
CLN3-249ENST00000636685 CACNG3O60359 315 aa15.45■□□□□ 0.06
CLN3-249ENST00000636685 KRT19P08727 400 aa15.45■□□□□ 0.06
CLN3-249ENST00000636685 PDGFRBP09619 1106 aa15.45■□□□□ 0.06
CLN3-249ENST00000636685 KRT10P13645 584 aa15.45■□□□□ 0.06
CLN3-249ENST00000636685 TYRP14679 529 aa15.45■□□□□ 0.06
CLN3-249ENST00000636685 IL12RB1P42701 662 aa15.45■□□□□ 0.06
CLN3-249ENST00000636685 TRAPPC10P48553 1259 aa15.45■□□□□ 0.06
CLN3-249ENST00000636685 KCNH2Q12809 1159 aa15.45■□□□□ 0.06
CLN3-249ENST00000636685 DNAJC3Q13217 504 aa15.45■□□□□ 0.06
CLN3-249ENST00000636685 STARD3Q14849 445 aa15.45■□□□□ 0.06
CLN3-249ENST00000636685 KCNT1Q5JUK3 1230 aa15.45■□□□□ 0.06
CLN3-249ENST00000636685 HYIQ5T013 277 aa15.45■□□□□ 0.06
CLN3-249ENST00000636685 HES3Q5TGS1 186 aa15.45■□□□□ 0.06
CLN3-249ENST00000636685 FAM124AQ86V42 546 aa15.45■□□□□ 0.06
CLN3-249ENST00000636685 CACUL1Q86Y37 369 aa15.45■□□□□ 0.06
CLN3-249ENST00000636685 TMPRSS6Q8IU80 811 aa15.45■□□□□ 0.06
CLN3-249ENST00000636685 LRRC52Q8N7C0 313 aa15.45■□□□□ 0.06
CLN3-249ENST00000636685 ZSWIM2Q8NEG5 633 aa15.45■□□□□ 0.06
CLN3-249ENST00000636685 KBTBD7Q8WVZ9 684 aa15.45■□□□□ 0.06
CLN3-249ENST00000636685 IGSF8Q969P0 613 aa15.45■□□□□ 0.06
CLN3-249ENST00000636685 PCED1BQ96HM7 432 aa15.45■□□□□ 0.06
CLN3-249ENST00000636685 C8orf48Q96LL4 319 aa15.45■□□□□ 0.06
CLN3-249ENST00000636685 SLITRK1Q96PX8 696 aa15.45■□□□□ 0.06
CLN3-249ENST00000636685 XPO6Q96QU8 1125 aaKnown RBP15.45■□□□□ 0.06
CLN3-249ENST00000636685 BBS2Q9BXC9 721 aa15.45■□□□□ 0.06
CLN3-249ENST00000636685 TMEM30AQ9NV96 361 aa15.45■□□□□ 0.06
CLN3-249ENST00000636685 ODF2LQ9ULJ1 636 aa15.45■□□□□ 0.06
CLN3-249ENST00000636685 NOL7Q9UMY1 257 aaKnown RBP15.45■□□□□ 0.06
CLN3-249ENST00000636685 STYXL1Q9Y6J8 313 aa15.45■□□□□ 0.06
CLN3-249ENST00000636685 TRAK2O60296 914 aa15.44■□□□□ 0.06
CLN3-249ENST00000636685 RFPL3O75679 317 aa15.44■□□□□ 0.06
CLN3-249ENST00000636685 FAM13AO94988 1023 aa15.44■□□□□ 0.06
CLN3-249ENST00000636685 C6P13671 934 aa15.44■□□□□ 0.06
CLN3-249ENST00000636685 SCP2P22307 547 aa15.44■□□□□ 0.06
CLN3-249ENST00000636685 TOB1P50616 345 aaPredicted RBP15.44■□□□□ 0.06
CLN3-249ENST00000636685 GTF2BQ00403 316 aa15.44■□□□□ 0.06
CLN3-249ENST00000636685 POU5F1Q01860 360 aaKnown RBP15.44■□□□□ 0.06
CLN3-249ENST00000636685 RHDQ02161 417 aa15.44■□□□□ 0.06
CLN3-249ENST00000636685 ANKRD1Q15327 319 aa15.44■□□□□ 0.06
CLN3-249ENST00000636685 TEAD4Q15561 434 aa15.44■□□□□ 0.06
CLN3-249ENST00000636685 HECTD3Q5T447 861 aa15.44■□□□□ 0.06
CLN3-249ENST00000636685 SLFN12LQ6IEE8 588 aa15.44■□□□□ 0.06
CLN3-249ENST00000636685 DTHD1Q6ZMT9 781 aa15.44■□□□□ 0.06
CLN3-249ENST00000636685 TPGS1Q6ZTW0 290 aa15.44■□□□□ 0.06
CLN3-249ENST00000636685 ERICH1Q86X53 443 aa15.44■□□□□ 0.06
CLN3-249ENST00000636685 SIPA1Q96FS4 1042 aa15.44■□□□□ 0.06
CLN3-249ENST00000636685 NAF1Q96HR8 494 aaKnown RBP15.44■□□□□ 0.06
CLN3-249ENST00000636685 C8orf76Q96K31 380 aa15.44■□□□□ 0.06
CLN3-249ENST00000636685 FIZ1Q96SL8 496 aa15.44■□□□□ 0.06
CLN3-249ENST00000636685 NUP58Q9BVL2 599 aa15.44■□□□□ 0.06
CLN3-249ENST00000636685 C6orf106Q9H6K1 298 aaPredicted RBP15.44■□□□□ 0.06
CLN3-249ENST00000636685 CCSER2Q9H7U1 834 aa15.44■□□□□ 0.06
CLN3-249ENST00000636685 PARVGQ9HBI0 331 aa15.44■□□□□ 0.06
CLN3-249ENST00000636685 CPNE5Q9HCH3 593 aa15.44■□□□□ 0.06
CLN3-249ENST00000636685 TM9SF3Q9HD45 589 aa15.44■□□□□ 0.06
CLN3-249ENST00000636685 CHORDC1Q9UHD1 332 aaPredicted RBP15.44■□□□□ 0.06
CLN3-249ENST00000636685 SIX4Q9UIU6 781 aa15.44■□□□□ 0.06
CLN3-249ENST00000636685 GTF3C3Q9Y5Q9 886 aa15.44■□□□□ 0.06
CLN3-249ENST00000636685 IGLV3-19P01714 112 aa15.43■□□□□ 0.06
CLN3-249ENST00000636685 CISD3P0C7P0 127 aa15.43■□□□□ 0.06
CLN3-249ENST00000636685 YWHAQP27348 245 aa15.43■□□□□ 0.06
Retrieved 100 of 20,778 RNA–protein pairs in 54.9 ms