RNA–Protein interactions for RNA: ENST00000635578.1

SMARCB1-209, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1, humanhuman

TSL 1 (best)

Gene SMARCB1, Length 242 nt, Biotype protein coding, Subcellular localisation Cytosol, Exosome, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCB1-209ENST00000635578 ABCC1P33527 1531 aa1.36□□□□□ -2.19
SMARCB1-209ENST00000635578 ZFYVE16Q7Z3T8 1539 aa1.36□□□□□ -2.19
SMARCB1-209ENST00000635578 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP1.36□□□□□ -2.19
SMARCB1-209ENST00000635578 SYCP2Q9BX26 1530 aa1.36□□□□□ -2.19
SMARCB1-209ENST00000635578 TCF20Q9UGU0 1960 aaKnown RBP1.36□□□□□ -2.19
SMARCB1-209ENST00000635578 A0A087WYN8 130 aa1.36□□□□□ -2.19
SMARCB1-209ENST00000635578 TCRBV5S1A1TA0A578 114 aa1.36□□□□□ -2.19
SMARCB1-209ENST00000635578 NTN3O00634 580 aaPredicted RBP1.36□□□□□ -2.19
SMARCB1-209ENST00000635578 SYNMO15061 1565 aa1.36□□□□□ -2.19
SMARCB1-209ENST00000635578 TBC1D4O60343 1298 aa1.36□□□□□ -2.19
SMARCB1-209ENST00000635578 TLR2O60603 784 aa1.36□□□□□ -2.19
SMARCB1-209ENST00000635578 RASSF9O75901 435 aa1.36□□□□□ -2.19
SMARCB1-209ENST00000635578 SOAT2O75908 522 aa1.36□□□□□ -2.19
SMARCB1-209ENST00000635578 MAP4K4O95819 1239 aaPredicted RBP1.36□□□□□ -2.19
SMARCB1-209ENST00000635578 SCGB1D2O95969 90 aa1.36□□□□□ -2.19
SMARCB1-209ENST00000635578 A1BGP04217 495 aa1.36□□□□□ -2.19
SMARCB1-209ENST00000635578 ALDH2P05091 517 aa1.36□□□□□ -2.19
SMARCB1-209ENST00000635578 U2AF1L5P0DN76 240 aaPredicted RBP1.36□□□□□ -2.19
SMARCB1-209ENST00000635578 KITP10721 976 aa1.36□□□□□ -2.19
SMARCB1-209ENST00000635578 TYRP14679 529 aa1.36□□□□□ -2.19
SMARCB1-209ENST00000635578 BRAFP15056 766 aa1.36□□□□□ -2.19
SMARCB1-209ENST00000635578 HDCP19113 662 aa1.36□□□□□ -2.19
SMARCB1-209ENST00000635578 AKAP5P24588 427 aa1.36□□□□□ -2.19
SMARCB1-209ENST00000635578 HTR1BP28222 390 aa1.36□□□□□ -2.19
SMARCB1-209ENST00000635578 PRDX5P30044 214 aa1.36□□□□□ -2.19
SMARCB1-209ENST00000635578 CDC25AP30304 524 aa1.36□□□□□ -2.19
SMARCB1-209ENST00000635578 WASP42768 502 aa1.36□□□□□ -2.19
SMARCB1-209ENST00000635578 PIK3CGP48736 1102 aa1.36□□□□□ -2.19
SMARCB1-209ENST00000635578 TOB1P50616 345 aaPredicted RBP1.36□□□□□ -2.19
SMARCB1-209ENST00000635578 HK3P52790 923 aa1.36□□□□□ -2.19
SMARCB1-209ENST00000635578 PRKAG1P54619 331 aa1.36□□□□□ -2.19
SMARCB1-209ENST00000635578 KRT85P78386 507 aa1.36□□□□□ -2.19
SMARCB1-209ENST00000635578 U2AF1Q01081 240 aaKnown RBP eCLIP1.36□□□□□ -2.19
SMARCB1-209ENST00000635578 DSC2Q02487 901 aa1.36□□□□□ -2.19
SMARCB1-209ENST00000635578 KRT17Q04695 432 aa1.36□□□□□ -2.19
SMARCB1-209ENST00000635578 TLE1Q04724 770 aa1.36□□□□□ -2.19
SMARCB1-209ENST00000635578 EXOSC9Q06265 439 aaKnown RBP1.36□□□□□ -2.19
SMARCB1-209ENST00000635578 TIAM1Q13009 1591 aa1.36□□□□□ -2.19
SMARCB1-209ENST00000635578 BOP1Q14137 746 aaKnown RBP1.36□□□□□ -2.19
SMARCB1-209ENST00000635578 WRNQ14191 1432 aaPredicted RBP eCLIP1.36□□□□□ -2.19
SMARCB1-209ENST00000635578 PLS1Q14651 629 aa1.36□□□□□ -2.19
SMARCB1-209ENST00000635578 SPHKAPQ2M3C7 1700 aa1.36□□□□□ -2.19
SMARCB1-209ENST00000635578 GFOD2Q3B7J2 385 aa1.36□□□□□ -2.19
SMARCB1-209ENST00000635578 TMEM240Q5SV17 173 aa1.36□□□□□ -2.19
SMARCB1-209ENST00000635578 ARHGAP40Q5TG30 622 aa1.36□□□□□ -2.19
SMARCB1-209ENST00000635578 ICE2Q659A1 982 aa1.36□□□□□ -2.19
SMARCB1-209ENST00000635578 ZNF324BQ6AW86 544 aaPredicted RBP1.36□□□□□ -2.19
SMARCB1-209ENST00000635578 CYB5RLQ6IPT4 315 aa1.36□□□□□ -2.19
SMARCB1-209ENST00000635578 DPY19L3Q6ZPD9 716 aa1.36□□□□□ -2.19
SMARCB1-209ENST00000635578 C14orf80Q86SX3 495 aa1.36□□□□□ -2.19
SMARCB1-209ENST00000635578 USP37Q86T82 979 aa1.36□□□□□ -2.19
SMARCB1-209ENST00000635578 DENND1CQ8IV53 801 aa1.36□□□□□ -2.19
SMARCB1-209ENST00000635578 FMNL3Q8IVF7 1028 aa1.36□□□□□ -2.19
SMARCB1-209ENST00000635578 ZBTB34Q8NCN2 500 aa1.36□□□□□ -2.19
SMARCB1-209ENST00000635578 RP9Q8TA86 221 aaKnown RBP1.36□□□□□ -2.19
SMARCB1-209ENST00000635578 PPP1R35Q8TAP8 253 aa1.36□□□□□ -2.19
SMARCB1-209ENST00000635578 NSUN6Q8TEA1 469 aaKnown RBP1.36□□□□□ -2.19
SMARCB1-209ENST00000635578 WFIKKN2Q8TEU8 576 aa1.36□□□□□ -2.19
SMARCB1-209ENST00000635578 DIS3LQ8TF46 1054 aaKnown RBP1.36□□□□□ -2.19
SMARCB1-209ENST00000635578 MAP4K1Q92918 833 aa1.36□□□□□ -2.19
SMARCB1-209ENST00000635578 PRG4Q92954 1404 aaPredicted RBP1.36□□□□□ -2.19
SMARCB1-209ENST00000635578 TSR2Q969E8 191 aaKnown RBP1.36□□□□□ -2.19
SMARCB1-209ENST00000635578 HPS3Q969F9 1004 aa1.36□□□□□ -2.19
SMARCB1-209ENST00000635578 C1GALT1C1Q96EU7 318 aa1.36□□□□□ -2.19
SMARCB1-209ENST00000635578 MRGPRX4Q96LA9 322 aa1.36□□□□□ -2.19
SMARCB1-209ENST00000635578 NLRP4Q96MN2 994 aa1.36□□□□□ -2.19
SMARCB1-209ENST00000635578 LENG8Q96PV6 779 aaPredicted RBP1.36□□□□□ -2.19
SMARCB1-209ENST00000635578 SLITRK1Q96PX8 696 aa1.36□□□□□ -2.19
SMARCB1-209ENST00000635578 ACO2Q99798 780 aaKnown RBP1.36□□□□□ -2.19
SMARCB1-209ENST00000635578 TMEM204Q9BSN7 226 aa1.36□□□□□ -2.19
SMARCB1-209ENST00000635578 RTFDC1Q9BY42 306 aaPredicted RBP1.36□□□□□ -2.19
SMARCB1-209ENST00000635578 MRPL46Q9H2W6 279 aaKnown RBP1.36□□□□□ -2.19
SMARCB1-209ENST00000635578 WDCPQ9H6R7 721 aa1.36□□□□□ -2.19
SMARCB1-209ENST00000635578 ST6GALNAC1Q9NSC7 600 aaPredicted RBP1.36□□□□□ -2.19
SMARCB1-209ENST00000635578 ZBTB40Q9NUA8 1239 aa1.36□□□□□ -2.19
SMARCB1-209ENST00000635578 PIH1D1Q9NWS0 290 aaKnown RBP1.36□□□□□ -2.19
SMARCB1-209ENST00000635578 ZSCAN32Q9NX65 697 aa1.36□□□□□ -2.19
SMARCB1-209ENST00000635578 TFCP2L1Q9NZI6 479 aa1.36□□□□□ -2.19
SMARCB1-209ENST00000635578 KLHL42Q9P2K6 505 aa1.36□□□□□ -2.19
SMARCB1-209ENST00000635578 SH2B3Q9UQQ2 575 aa1.36□□□□□ -2.19
SMARCB1-209ENST00000635578 FAM50BQ9Y247 325 aa1.36□□□□□ -2.19
SMARCB1-209ENST00000635578 STXBP5LQ9Y2K9 1186 aa1.36□□□□□ -2.19
SMARCB1-209ENST00000635578 TMX2Q9Y320 296 aa1.36□□□□□ -2.19
SMARCB1-209ENST00000635578 SNX13Q9Y5W8 968 aa1.36□□□□□ -2.19
SMARCB1-209ENST00000635578 EID1Q9Y6B2 187 aa1.36□□□□□ -2.19
SMARCB1-209ENST00000635578 RGPD5Q99666 1765 aa1.36□□□□□ -2.19
SMARCB1-209ENST00000635578 PIK3C2BO00750 1634 aa1.36□□□□□ -2.19
SMARCB1-209ENST00000635578 CHD2O14647 1828 aaKnown RBP1.36□□□□□ -2.19
SMARCB1-209ENST00000635578 ROBO1Q9Y6N7 1651 aa1.35□□□□□ -2.19
SMARCB1-209ENST00000635578 CAMTA1Q9Y6Y1 1673 aa1.35□□□□□ -2.19
SMARCB1-209ENST00000635578 UGGT2Q9NYU1 1516 aa1.35□□□□□ -2.19
SMARCB1-209ENST00000635578 TNS1Q9HBL0 1735 aaKnown RBP1.35□□□□□ -2.19
SMARCB1-209ENST00000635578 NWD2Q9ULI1 1742 aa1.35□□□□□ -2.19
SMARCB1-209ENST00000635578 CRYBG1Q9Y4K1 1723 aa1.35□□□□□ -2.19
SMARCB1-209ENST00000635578 PLXNC1O60486 1568 aa1.35□□□□□ -2.19
SMARCB1-209ENST00000635578 FHAD1B1AJZ9 1412 aa1.35□□□□□ -2.19
SMARCB1-209ENST00000635578 VSTM5A8MXK1 200 aa1.35□□□□□ -2.19
SMARCB1-209ENST00000635578 AP4M1O00189 453 aa1.35□□□□□ -2.19
SMARCB1-209ENST00000635578 TNFRSF13BO14836 293 aaPredicted RBP1.35□□□□□ -2.19
SMARCB1-209ENST00000635578 PRPF3O43395 683 aaKnown RBP1.35□□□□□ -2.19
Retrieved 100 of 20,778 RNA–protein pairs in 20.8 ms