RNA–Protein interactions for RNA: ENST00000628023.3

CLN3-239, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,183 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-239ENST00000628023 FBXO21O94952 628 aa18.98■□□□□ 0.63
CLN3-239ENST00000628023 OAS1P00973 400 aaKnown RBP18.98■□□□□ 0.63
CLN3-239ENST00000628023 MMEP08473 750 aa18.98■□□□□ 0.63
CLN3-239ENST00000628023 ZDHHC11BP0C7U3 371 aa18.98■□□□□ 0.63
CLN3-239ENST00000628023 RARGP13631 454 aa18.98■□□□□ 0.63
CLN3-239ENST00000628023 WEE1P30291 646 aa18.98■□□□□ 0.63
CLN3-239ENST00000628023 YWHAGP61981 247 aaKnown RBP eCLIP18.98■□□□□ 0.63
CLN3-239ENST00000628023 ASIC2Q16515 512 aa18.98■□□□□ 0.63
CLN3-239ENST00000628023 FIGNQ5HY92 759 aa18.98■□□□□ 0.63
CLN3-239ENST00000628023 SNX30Q5VWJ9 437 aa18.98■□□□□ 0.63
CLN3-239ENST00000628023 ZNF397Q8NF99 534 aaPredicted RBP18.98■□□□□ 0.63
CLN3-239ENST00000628023 STK32AQ8WU08 396 aa18.98■□□□□ 0.63
CLN3-239ENST00000628023 SLC20A1Q8WUM9 679 aa18.98■□□□□ 0.63
CLN3-239ENST00000628023 DEPDC1BQ8WUY9 529 aa18.98■□□□□ 0.63
CLN3-239ENST00000628023 BAP1Q92560 729 aa18.98■□□□□ 0.63
CLN3-239ENST00000628023 USP13Q92995 863 aaPredicted RBP18.98■□□□□ 0.63
CLN3-239ENST00000628023 IQCDQ96DY2 449 aa18.98■□□□□ 0.63
CLN3-239ENST00000628023 CDK5RAP1Q96SZ6 601 aaKnown RBP18.98■□□□□ 0.63
CLN3-239ENST00000628023 FOXQ1Q9C009 403 aa18.98■□□□□ 0.63
CLN3-239ENST00000628023 TRIM5Q9C035 493 aa18.98■□□□□ 0.63
CLN3-239ENST00000628023 CCSER2Q9H7U1 834 aa18.98■□□□□ 0.63
CLN3-239ENST00000628023 NMUR1Q9HB89 426 aa18.98■□□□□ 0.63
CLN3-239ENST00000628023 TDP1Q9NUW8 608 aa18.98■□□□□ 0.63
CLN3-239ENST00000628023 SEPT11Q9NVA2 429 aaKnown RBP18.98■□□□□ 0.63
CLN3-239ENST00000628023 SMPD4Q9NXE4 827 aa18.98■□□□□ 0.63
CLN3-239ENST00000628023 CFAP54Q96N23 3096 aa18.98■□□□□ 0.63
CLN3-239ENST00000628023 ANAPC1Q9H1A4 1944 aa18.98■□□□□ 0.63
CLN3-239ENST00000628023 COCHO43405 550 aa18.97■□□□□ 0.63
CLN3-239ENST00000628023 LMNAP02545 664 aaKnown RBP18.97■□□□□ 0.63
CLN3-239ENST00000628023 PSMC3P17980 439 aa18.97■□□□□ 0.63
CLN3-239ENST00000628023 PGFP49763 221 aa18.97■□□□□ 0.63
CLN3-239ENST00000628023 SNX16P57768 344 aa18.97■□□□□ 0.63
CLN3-239ENST00000628023 DAOAP59103 153 aa18.97■□□□□ 0.63
CLN3-239ENST00000628023 CDR2Q01850 454 aa18.97■□□□□ 0.63
CLN3-239ENST00000628023 ZNF268Q14587 947 aaPredicted RBP18.97■□□□□ 0.63
CLN3-239ENST00000628023 UBXN2BQ14CS0 331 aa18.97■□□□□ 0.63
CLN3-239ENST00000628023 C10orf120Q5SQS8 335 aa18.97■□□□□ 0.63
CLN3-239ENST00000628023 SFMBT2Q5VUG0 894 aa18.97■□□□□ 0.63
CLN3-239ENST00000628023 VITQ6UXI7 678 aa18.97■□□□□ 0.63
CLN3-239ENST00000628023 RSRC2Q7L4I2 434 aaKnown RBP18.97■□□□□ 0.63
CLN3-239ENST00000628023 GAS2L3Q86XJ1 694 aa18.97■□□□□ 0.63
CLN3-239ENST00000628023 MSANTD4Q8NCY6 345 aa18.97■□□□□ 0.63
CLN3-239ENST00000628023 BPIFB1Q8TDL5 484 aa18.97■□□□□ 0.63
CLN3-239ENST00000628023 CPLX3Q8WVH0 158 aa18.97■□□□□ 0.63
CLN3-239ENST00000628023 DDX1Q92499 740 aaKnown RBP18.97■□□□□ 0.63
CLN3-239ENST00000628023 NDRG1Q92597 394 aaKnown RBP18.97■□□□□ 0.63
CLN3-239ENST00000628023 PPP1R13BQ96KQ4 1090 aa18.97■□□□□ 0.63
CLN3-239ENST00000628023 NELL2Q99435 816 aa18.97■□□□□ 0.63
CLN3-239ENST00000628023 TRMT61BQ9BVS5 477 aaKnown RBP18.97■□□□□ 0.63
CLN3-239ENST00000628023 OSBPL6Q9BZF3 934 aa18.97■□□□□ 0.63
CLN3-239ENST00000628023 PLA2G2FQ9BZM2 168 aa18.97■□□□□ 0.63
CLN3-239ENST00000628023 EDEM3Q9BZQ6 932 aa18.97■□□□□ 0.63
CLN3-239ENST00000628023 TTYH3Q9C0H2 523 aa18.97■□□□□ 0.63
CLN3-239ENST00000628023 OBP2AQ9NY56 170 aa18.97■□□□□ 0.63
CLN3-239ENST00000628023 DLGAP2Q9P1A6 1054 aa18.97■□□□□ 0.63
CLN3-239ENST00000628023 CYTH4Q9UIA0 394 aa18.97■□□□□ 0.63
CLN3-239ENST00000628023 NOCTQ9UK39 431 aaKnown RBP18.97■□□□□ 0.63
CLN3-239ENST00000628023 ARHGAP26Q9UNA1 814 aa18.97■□□□□ 0.63
CLN3-239ENST00000628023 CCL26Q9Y258 94 aa18.97■□□□□ 0.63
CLN3-239ENST00000628023 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP18.97■□□□□ 0.63
CLN3-239ENST00000628023 CPQQ9Y646 472 aa18.97■□□□□ 0.63
CLN3-239ENST00000628023 ITIH6Q6UXX5 1313 aa18.97■□□□□ 0.63
CLN3-239ENST00000628023 A0A1W2PQJ5 194 aa18.96■□□□□ 0.63
CLN3-239ENST00000628023 E5RJQ4 531 aa18.96■□□□□ 0.63
CLN3-239ENST00000628023 NCAM2O15394 837 aa18.96■□□□□ 0.63
CLN3-239ENST00000628023 SART1O43290 800 aaKnown RBP18.96■□□□□ 0.63
CLN3-239ENST00000628023 LSM8O95777 96 aaKnown RBP18.96■□□□□ 0.63
CLN3-239ENST00000628023 GDI1P31150 447 aa18.96■□□□□ 0.63
CLN3-239ENST00000628023 MAGEA9P43362 315 aa18.96■□□□□ 0.63
CLN3-239ENST00000628023 SLC7A9P82251 487 aa18.96■□□□□ 0.63
CLN3-239ENST00000628023 BTBD8Q5XKL5 378 aa18.96■□□□□ 0.63
CLN3-239ENST00000628023 PM20D1Q6GTS8 502 aa18.96■□□□□ 0.63
CLN3-239ENST00000628023 SCD5Q86SK9 330 aa18.96■□□□□ 0.63
CLN3-239ENST00000628023 MFSD6LQ8IWD5 586 aa18.96■□□□□ 0.63
CLN3-239ENST00000628023 FAM149B1Q96BN6 582 aa18.96■□□□□ 0.63
CLN3-239ENST00000628023 RSPRY1Q96DX4 576 aa18.96■□□□□ 0.63
CLN3-239ENST00000628023 SLC4A5Q9BY07 1137 aa18.96■□□□□ 0.63
CLN3-239ENST00000628023 RNF38Q9H0F5 515 aa18.96■□□□□ 0.63
CLN3-239ENST00000628023 BRD9Q9H8M2 597 aa18.96■□□□□ 0.63
CLN3-239ENST00000628023 CYLDQ9NQC7 956 aa18.96■□□□□ 0.63
CLN3-239ENST00000628023 MTPAPQ9NVV4 582 aaKnown RBP eCLIP18.96■□□□□ 0.63
CLN3-239ENST00000628023 THG1LQ9NWX6 298 aaKnown RBP18.96■□□□□ 0.63
CLN3-239ENST00000628023 OSER1Q9NX31 292 aa18.96■□□□□ 0.63
CLN3-239ENST00000628023 CLIC5Q9NZA1 410 aa18.96■□□□□ 0.63
CLN3-239ENST00000628023 MRPS17Q9Y2R5 130 aaKnown RBP18.96■□□□□ 0.63
CLN3-239ENST00000628023 FAM170AA1A519 330 aa18.95■□□□□ 0.62
CLN3-239ENST00000628023 FAM170BA6NMN3 283 aa18.95■□□□□ 0.62
CLN3-239ENST00000628023 YJEFN3A6XGL0 299 aa18.95■□□□□ 0.62
CLN3-239ENST00000628023 E7ENQ6 273 aa18.95■□□□□ 0.62
CLN3-239ENST00000628023 ZNF263O14978 683 aa18.95■□□□□ 0.62
CLN3-239ENST00000628023 OLFM2O95897 454 aa18.95■□□□□ 0.62
CLN3-239ENST00000628023 ATP5C1P36542 298 aaKnown RBP18.95■□□□□ 0.62
CLN3-239ENST00000628023 SPECC1LQ69YQ0 1117 aa18.95■□□□□ 0.62
CLN3-239ENST00000628023 CC2D1AQ6P1N0 951 aaPredicted RBP18.95■□□□□ 0.62
CLN3-239ENST00000628023 SARM1Q6SZW1 724 aa18.95■□□□□ 0.62
CLN3-239ENST00000628023 TRIM72Q6ZMU5 477 aa18.95■□□□□ 0.62
CLN3-239ENST00000628023 DDX42Q86XP3 938 aaKnown RBP eCLIP18.95■□□□□ 0.62
CLN3-239ENST00000628023 SCUBE3Q8IX30 993 aa18.95■□□□□ 0.62
CLN3-239ENST00000628023 SCML4Q8N228 414 aa18.95■□□□□ 0.62
CLN3-239ENST00000628023 WDTC1Q8N5D0 677 aa18.95■□□□□ 0.62
Retrieved 100 of 20,778 RNA–protein pairs in 49.5 ms