RNA–Protein interactions for RNA: ENST00000611852.4

CCDC28A-202, Transcript of coiled-coil domain containing 28A, humanhuman

TSL 1 (best) BASIC

Gene CCDC28A, Length 1,505 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28A-202ENST00000611852 NOMO3P69849 1222 aa17.35■□□□□ 0.37
CCDC28A-202ENST00000611852 SIGLEC14Q08ET2 396 aa17.35■□□□□ 0.37
CCDC28A-202ENST00000611852 PTPN20Q4JDL3 420 aa17.35■□□□□ 0.37
CCDC28A-202ENST00000611852 C10orf120Q5SQS8 335 aa17.35■□□□□ 0.37
CCDC28A-202ENST00000611852 SFMBT2Q5VUG0 894 aa17.35■□□□□ 0.37
CCDC28A-202ENST00000611852 BTBD8Q5XKL5 378 aa17.35■□□□□ 0.37
CCDC28A-202ENST00000611852 E4F1Q66K89 784 aaPredicted RBP17.35■□□□□ 0.37
CCDC28A-202ENST00000611852 TADA2BQ86TJ2 420 aa17.35■□□□□ 0.37
CCDC28A-202ENST00000611852 YAF2Q8IY57 180 aa17.35■□□□□ 0.37
CCDC28A-202ENST00000611852 TTC16Q8NEE8 873 aa17.35■□□□□ 0.37
CCDC28A-202ENST00000611852 BRD9Q9H8M2 597 aa17.35■□□□□ 0.37
CCDC28A-202ENST00000611852 CAPN11Q9UMQ6 739 aa17.35■□□□□ 0.37
CCDC28A-202ENST00000611852 LEFTY2O00292 366 aa17.34■□□□□ 0.37
CCDC28A-202ENST00000611852 ARNTLO00327 626 aa17.34■□□□□ 0.37
CCDC28A-202ENST00000611852 ZNF263O14978 683 aa17.34■□□□□ 0.37
CCDC28A-202ENST00000611852 MDM4O15151 490 aa17.34■□□□□ 0.37
CCDC28A-202ENST00000611852 CHADO15335 359 aa17.34■□□□□ 0.37
CCDC28A-202ENST00000611852 SART1O43290 800 aaKnown RBP17.34■□□□□ 0.37
CCDC28A-202ENST00000611852 TECTAO75443 2155 aa17.34■□□□□ 0.37
CCDC28A-202ENST00000611852 LTFP02788 710 aa17.34■□□□□ 0.37
CCDC28A-202ENST00000611852 CYP1A1P04798 512 aaPredicted RBP17.34■□□□□ 0.37
CCDC28A-202ENST00000611852 MTF1Q14872 753 aa17.34■□□□□ 0.37
CCDC28A-202ENST00000611852 ARHGAP29Q52LW3 1261 aa17.34■□□□□ 0.37
CCDC28A-202ENST00000611852 SPECC1LQ69YQ0 1117 aa17.34■□□□□ 0.37
CCDC28A-202ENST00000611852 VSTM4Q8IW00 320 aa17.34■□□□□ 0.37
CCDC28A-202ENST00000611852 CPLX3Q8WVH0 158 aa17.34■□□□□ 0.37
CCDC28A-202ENST00000611852 EDEM1Q92611 657 aa17.34■□□□□ 0.37
CCDC28A-202ENST00000611852 IRF7Q92985 503 aa17.34■□□□□ 0.37
CCDC28A-202ENST00000611852 ZFYVE19Q96K21 471 aa17.34■□□□□ 0.37
CCDC28A-202ENST00000611852 GKN1Q9NS71 199 aa17.34■□□□□ 0.37
CCDC28A-202ENST00000611852 ABCC13Q9NSE7 274 aa17.34■□□□□ 0.37
CCDC28A-202ENST00000611852 THG1LQ9NWX6 298 aaKnown RBP17.34■□□□□ 0.37
CCDC28A-202ENST00000611852 DNMT3LQ9UJW3 386 aa17.34■□□□□ 0.37
CCDC28A-202ENST00000611852 KIF26AQ9ULI4 1882 aaPredicted RBP17.34■□□□□ 0.37
CCDC28A-202ENST00000611852 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP17.34■□□□□ 0.37
CCDC28A-202ENST00000611852 ERBB2P04626 1255 aa17.33■□□□□ 0.37
CCDC28A-202ENST00000611852 ZBED6P86452 979 aa17.33■□□□□ 0.37
CCDC28A-202ENST00000611852 PFKPQ01813 784 aa17.33■□□□□ 0.37
CCDC28A-202ENST00000611852 ASIC2Q16515 512 aa17.33■□□□□ 0.37
CCDC28A-202ENST00000611852 NAA35Q5VZE5 725 aa17.33■□□□□ 0.37
CCDC28A-202ENST00000611852 TRIM72Q6ZMU5 477 aa17.33■□□□□ 0.37
CCDC28A-202ENST00000611852 TRIM67Q6ZTA4 783 aa17.33■□□□□ 0.37
CCDC28A-202ENST00000611852 RSRC2Q7L4I2 434 aaKnown RBP17.33■□□□□ 0.37
CCDC28A-202ENST00000611852 DDX42Q86XP3 938 aaKnown RBP eCLIP17.33■□□□□ 0.37
CCDC28A-202ENST00000611852 ZNF397Q8NF99 534 aaPredicted RBP17.33■□□□□ 0.37
CCDC28A-202ENST00000611852 IPO4Q8TEX9 1081 aaKnown RBP17.33■□□□□ 0.37
CCDC28A-202ENST00000611852 CPA5Q8WXQ8 436 aa17.33■□□□□ 0.37
CCDC28A-202ENST00000611852 GOLGA1Q92805 767 aa17.33■□□□□ 0.37
CCDC28A-202ENST00000611852 ASIC4Q96FT7 647 aa17.33■□□□□ 0.37
CCDC28A-202ENST00000611852 PIWIL1Q96J94 861 aaKnown RBP17.33■□□□□ 0.37
CCDC28A-202ENST00000611852 PCDHB18PQ96TA0 734 aa17.33■□□□□ 0.37
CCDC28A-202ENST00000611852 AGPAT1Q99943 283 aa17.33■□□□□ 0.37
CCDC28A-202ENST00000611852 FAM83CQ9BQN1 747 aa17.33■□□□□ 0.37
CCDC28A-202ENST00000611852 SYT11Q9BT88 431 aa17.33■□□□□ 0.37
CCDC28A-202ENST00000611852 KLF16Q9BXK1 252 aaPredicted RBP17.33■□□□□ 0.37
CCDC28A-202ENST00000611852 TRIM5Q9C035 493 aa17.33■□□□□ 0.37
CCDC28A-202ENST00000611852 SYNCQ9H7C4 482 aa17.33■□□□□ 0.37
CCDC28A-202ENST00000611852 TRPV5Q9NQA5 729 aa17.33■□□□□ 0.37
CCDC28A-202ENST00000611852 CFAP97Q9P2B7 532 aa17.33■□□□□ 0.37
CCDC28A-202ENST00000611852 WNT16Q9UBV4 365 aa17.33■□□□□ 0.37
CCDC28A-202ENST00000611852 FAM170AA1A519 330 aa17.32■□□□□ 0.36
CCDC28A-202ENST00000611852 FYNP06241 537 aa17.32■□□□□ 0.36
CCDC28A-202ENST00000611852 CASP14P31944 242 aa17.32■□□□□ 0.36
CCDC28A-202ENST00000611852 PRKCIP41743 596 aa17.32■□□□□ 0.36
CCDC28A-202ENST00000611852 GABRB2P47870 512 aa17.32■□□□□ 0.36
CCDC28A-202ENST00000611852 SNX16P57768 344 aa17.32■□□□□ 0.36
CCDC28A-202ENST00000611852 EFEMP1Q12805 493 aa17.32■□□□□ 0.36
CCDC28A-202ENST00000611852 IER5LQ5T953 404 aa17.32■□□□□ 0.36
CCDC28A-202ENST00000611852 CC2D1AQ6P1N0 951 aaPredicted RBP17.32■□□□□ 0.36
CCDC28A-202ENST00000611852 ERICH1Q86X53 443 aa17.32■□□□□ 0.36
CCDC28A-202ENST00000611852 OLIG1Q8TAK6 271 aa17.32■□□□□ 0.36
CCDC28A-202ENST00000611852 DNASE1L2Q92874 299 aa17.32■□□□□ 0.36
CCDC28A-202ENST00000611852 NUCKS1Q9H1E3 243 aaKnown RBP17.32■□□□□ 0.36
CCDC28A-202ENST00000611852 OLA1Q9NTK5 396 aaKnown RBP17.32■□□□□ 0.36
CCDC28A-202ENST00000611852 LUC7L2Q9Y383 392 aaKnown RBP17.32■□□□□ 0.36
CCDC28A-202ENST00000611852 UNGP13051 313 aaPredicted RBP17.31■□□□□ 0.36
CCDC28A-202ENST00000611852 TAF5Q15542 800 aa17.31■□□□□ 0.36
CCDC28A-202ENST00000611852 OLFML1Q6UWY5 402 aa17.31■□□□□ 0.36
CCDC28A-202ENST00000611852 FAM183BPQ6ZVS7 135 aa17.31■□□□□ 0.36
CCDC28A-202ENST00000611852 MIB1Q86YT6 1006 aa17.31■□□□□ 0.36
CCDC28A-202ENST00000611852 KIAA1958Q8N8K9 716 aa17.31■□□□□ 0.36
CCDC28A-202ENST00000611852 RNF139Q8WU17 664 aa17.31■□□□□ 0.36
CCDC28A-202ENST00000611852 OSCP1Q8WVF1 389 aa17.31■□□□□ 0.36
CCDC28A-202ENST00000611852 SYN2Q92777 582 aaPredicted RBP17.31■□□□□ 0.36
CCDC28A-202ENST00000611852 FAM149B1Q96BN6 582 aa17.31■□□□□ 0.36
CCDC28A-202ENST00000611852 C18orf8Q96DM3 657 aa17.31■□□□□ 0.36
CCDC28A-202ENST00000611852 HAUS4Q9H6D7 363 aa17.31■□□□□ 0.36
CCDC28A-202ENST00000611852 MARCH2Q9P0N8 246 aa17.31■□□□□ 0.36
CCDC28A-202ENST00000611852 RASAL2Q9UJF2 1139 aa17.31■□□□□ 0.36
CCDC28A-202ENST00000611852 FBXL21Q9UKT6 434 aa17.31■□□□□ 0.36
CCDC28A-202ENST00000611852 COL4A2P08572 1712 aa17.31■□□□□ 0.36
CCDC28A-202ENST00000611852 E2F8A0AVK6 867 aa17.31■□□□□ 0.36
CCDC28A-202ENST00000611852 YWHAZP63104 245 aaKnown RBP17.31■□□□□ 0.36
CCDC28A-202ENST00000611852 TNK2Q07912 1038 aa17.31■□□□□ 0.36
CCDC28A-202ENST00000611852 CLEC16AQ2KHT3 1053 aa17.31■□□□□ 0.36
CCDC28A-202ENST00000611852 TRIM68Q6AZZ1 485 aa17.31■□□□□ 0.36
CCDC28A-202ENST00000611852 OR6B2Q6IFH4 312 aa17.31■□□□□ 0.36
CCDC28A-202ENST00000611852 MSANTD2Q6P1R3 559 aa17.31■□□□□ 0.36
CCDC28A-202ENST00000611852 BEND5Q7L4P6 421 aa17.31■□□□□ 0.36
CCDC28A-202ENST00000611852 ZDHHC17Q8IUH5 632 aa17.31■□□□□ 0.36
Retrieved 100 of 20,778 RNA–protein pairs in 25.3 ms