RNA–Protein interactions for RNA: ENST00000601689.1

UPF1-212, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 4

Gene UPF1, Length 561 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-212ENST00000601689 MTPAPQ9NVV4 582 aaKnown RBP eCLIP20.33■□□□□ 0.85
UPF1-212ENST00000601689 WNT6Q9Y6F9 365 aa20.33■□□□□ 0.85
UPF1-212ENST00000601689 F5P12259 2224 aa20.33■□□□□ 0.84
UPF1-212ENST00000601689 TARSP26639 723 aaKnown RBP20.32■□□□□ 0.84
UPF1-212ENST00000601689 RPS9P46781 194 aaKnown RBP20.32■□□□□ 0.84
UPF1-212ENST00000601689 COPB1P53618 953 aaKnown RBP20.32■□□□□ 0.84
UPF1-212ENST00000601689 PREPLQ4J6C6 727 aaPredicted RBP20.32■□□□□ 0.84
UPF1-212ENST00000601689 PKDCCQ504Y2 493 aa20.32■□□□□ 0.84
UPF1-212ENST00000601689 KLHDC7AQ5VTJ3 777 aa20.32■□□□□ 0.84
UPF1-212ENST00000601689 SCML4Q8N228 414 aa20.32■□□□□ 0.84
UPF1-212ENST00000601689 IRGQQ8WZA9 623 aa20.32■□□□□ 0.84
UPF1-212ENST00000601689 PLCB1Q9NQ66 1216 aa20.32■□□□□ 0.84
UPF1-212ENST00000601689 ABCC13Q9NSE7 274 aa20.32■□□□□ 0.84
UPF1-212ENST00000601689 LIMA1Q9UHB6 759 aaKnown RBP20.32■□□□□ 0.84
UPF1-212ENST00000601689 ZNF510Q9Y2H8 683 aa20.32■□□□□ 0.84
UPF1-212ENST00000601689 SYCE3A1L190 88 aa20.31■□□□□ 0.84
UPF1-212ENST00000601689 ADH1CP00326 375 aa20.31■□□□□ 0.84
UPF1-212ENST00000601689 IRF1P10914 325 aa20.31■□□□□ 0.84
UPF1-212ENST00000601689 UCHL3P15374 230 aa20.31■□□□□ 0.84
UPF1-212ENST00000601689 RGS7P49802 495 aa20.31■□□□□ 0.84
UPF1-212ENST00000601689 UBXN1Q04323 297 aa20.31■□□□□ 0.84
UPF1-212ENST00000601689 KCNMA1Q12791 1236 aa20.31■□□□□ 0.84
UPF1-212ENST00000601689 EML3Q32P44 896 aa20.31■□□□□ 0.84
UPF1-212ENST00000601689 STK32AQ8WU08 396 aa20.31■□□□□ 0.84
UPF1-212ENST00000601689 DCLK3Q9C098 648 aa20.31■□□□□ 0.84
UPF1-212ENST00000601689 LMAN1LQ9HAT1 526 aa20.31■□□□□ 0.84
UPF1-212ENST00000601689 NMUR1Q9HB89 426 aa20.31■□□□□ 0.84
UPF1-212ENST00000601689 HPS4Q9NQG7 708 aa20.31■□□□□ 0.84
UPF1-212ENST00000601689 SPATA6Q9NWH7 488 aaPredicted RBP20.31■□□□□ 0.84
UPF1-212ENST00000601689 RASAL2Q9UJF2 1139 aa20.31■□□□□ 0.84
UPF1-212ENST00000601689 LAMTOR5O43504 91 aa20.3■□□□□ 0.84
UPF1-212ENST00000601689 ARSAP15289 507 aa20.3■□□□□ 0.84
UPF1-212ENST00000601689 SOX9P48436 509 aa20.3■□□□□ 0.84
UPF1-212ENST00000601689 DRAP1Q14919 205 aaPredicted RBP20.3■□□□□ 0.84
UPF1-212ENST00000601689 PMF1Q6P1K2 205 aa20.3■□□□□ 0.84
UPF1-212ENST00000601689 NUDT18Q6ZVK8 323 aa20.3■□□□□ 0.84
UPF1-212ENST00000601689 MIB1Q86YT6 1006 aa20.3■□□□□ 0.84
UPF1-212ENST00000601689 SYNPOQ8N3V7 929 aa20.3■□□□□ 0.84
UPF1-212ENST00000601689 NEK11Q8NG66 645 aa20.3■□□□□ 0.84
UPF1-212ENST00000601689 SPAG5Q96R06 1193 aa20.3■□□□□ 0.84
UPF1-212ENST00000601689 STK33Q9BYT3 514 aa20.3■□□□□ 0.84
UPF1-212ENST00000601689 SIX2Q9NPC8 291 aa20.3■□□□□ 0.84
UPF1-212ENST00000601689 LRRC10BA6NIK2 292 aa20.29■□□□□ 0.84
UPF1-212ENST00000601689 LGALS16A8MUM7 142 aa20.29■□□□□ 0.84
UPF1-212ENST00000601689 GOLGA6L19H0YKK7 550 aa20.29■□□□□ 0.84
UPF1-212ENST00000601689 TULP2O00295 520 aa20.29■□□□□ 0.84
UPF1-212ENST00000601689 FOXN3O00409 490 aaPredicted RBP20.29■□□□□ 0.84
UPF1-212ENST00000601689 TBX18O95935 607 aa20.29■□□□□ 0.84
UPF1-212ENST00000601689 DRD1P21728 446 aa20.29■□□□□ 0.84
UPF1-212ENST00000601689 GJA4P35212 333 aa20.29■□□□□ 0.84
UPF1-212ENST00000601689 GPD2P43304 727 aa20.29■□□□□ 0.84
UPF1-212ENST00000601689 EFEMP1Q12805 493 aa20.29■□□□□ 0.84
UPF1-212ENST00000601689 PON2Q15165 354 aa20.29■□□□□ 0.84
UPF1-212ENST00000601689 BSPRYQ5W0U4 402 aa20.29■□□□□ 0.84
UPF1-212ENST00000601689 SCD5Q86SK9 330 aa20.29■□□□□ 0.84
UPF1-212ENST00000601689 C1orf210Q8IVY1 113 aa20.29■□□□□ 0.84
UPF1-212ENST00000601689 ADGRG2Q8IZP9 1017 aa20.29■□□□□ 0.84
UPF1-212ENST00000601689 CLDN23Q96B33 292 aa20.29■□□□□ 0.84
UPF1-212ENST00000601689 KLF16Q9BXK1 252 aaPredicted RBP20.29■□□□□ 0.84
UPF1-212ENST00000601689 LINC00597Q9H2U6 94 aa20.29■□□□□ 0.84
UPF1-212ENST00000601689 OSER1Q9NX31 292 aa20.29■□□□□ 0.84
UPF1-212ENST00000601689 MARCH2Q9P0N8 246 aa20.29■□□□□ 0.84
UPF1-212ENST00000601689 NUDT5Q9UKK9 219 aa20.29■□□□□ 0.84
UPF1-212ENST00000601689 MTF2Q9Y483 593 aaPredicted RBP20.29■□□□□ 0.84
UPF1-212ENST00000601689 COL4A2P08572 1712 aa20.28■□□□□ 0.84
UPF1-212ENST00000601689 DAOAP59103 153 aa20.28■□□□□ 0.84
UPF1-212ENST00000601689 ZXDBP98169 803 aa20.28■□□□□ 0.84
UPF1-212ENST00000601689 APBA1Q02410 837 aa20.28■□□□□ 0.84
UPF1-212ENST00000601689 GAD2Q05329 585 aa20.28■□□□□ 0.84
UPF1-212ENST00000601689 FBXO43Q4G163 708 aa20.28■□□□□ 0.84
UPF1-212ENST00000601689 HTR3DQ70Z44 454 aa20.28■□□□□ 0.84
UPF1-212ENST00000601689 FMNL3Q8IVF7 1028 aa20.28■□□□□ 0.84
UPF1-212ENST00000601689 FAM71AQ8IYT1 594 aa20.28■□□□□ 0.84
UPF1-212ENST00000601689 MSANTD4Q8NCY6 345 aa20.28■□□□□ 0.84
UPF1-212ENST00000601689 RIN3Q8TB24 985 aa20.28■□□□□ 0.84
UPF1-212ENST00000601689 ATOH1Q92858 354 aaPredicted RBP20.28■□□□□ 0.84
UPF1-212ENST00000601689 CD101Q93033 1021 aa20.28■□□□□ 0.84
UPF1-212ENST00000601689 FAM122AQ96E09 287 aa20.28■□□□□ 0.84
UPF1-212ENST00000601689 P2RY13Q9BPV8 354 aa20.28■□□□□ 0.84
UPF1-212ENST00000601689 MIS12Q9H081 205 aa20.28■□□□□ 0.84
UPF1-212ENST00000601689 LHX5Q9H2C1 402 aa20.28■□□□□ 0.84
UPF1-212ENST00000601689 SYNCQ9H7C4 482 aa20.28■□□□□ 0.84
UPF1-212ENST00000601689 FAM207AQ9NSI2 230 aaPredicted RBP20.28■□□□□ 0.84
UPF1-212ENST00000601689 PCDHGC3Q9UN70 934 aa20.28■□□□□ 0.84
UPF1-212ENST00000601689 FHOD1Q9Y613 1164 aa20.28■□□□□ 0.84
UPF1-212ENST00000601689 PALM2-AKAP2B1ALY0 433 aaPredicted RBP20.27■□□□□ 0.84
UPF1-212ENST00000601689 TRDMT1O14717 391 aaKnown RBP20.27■□□□□ 0.84
UPF1-212ENST00000601689 CAPN9O14815 690 aa20.27■□□□□ 0.84
UPF1-212ENST00000601689 ATG13O75143 517 aa20.27■□□□□ 0.84
UPF1-212ENST00000601689 ZNF18P17022 549 aa20.27■□□□□ 0.84
UPF1-212ENST00000601689 CHKAP35790 457 aa20.27■□□□□ 0.84
UPF1-212ENST00000601689 POLR2FP61218 127 aaKnown RBP20.27■□□□□ 0.84
UPF1-212ENST00000601689 NCAPHQ15003 741 aa20.27■□□□□ 0.84
UPF1-212ENST00000601689 ANGPT1Q15389 498 aa20.27■□□□□ 0.84
UPF1-212ENST00000601689 DHCR24Q15392 516 aa20.27■□□□□ 0.84
UPF1-212ENST00000601689 IPO4Q8TEX9 1081 aaKnown RBP20.27■□□□□ 0.84
UPF1-212ENST00000601689 FAM149B1Q96BN6 582 aa20.27■□□□□ 0.84
UPF1-212ENST00000601689 ZFRQ96KR1 1074 aaKnown RBP20.27■□□□□ 0.84
UPF1-212ENST00000601689 ZSWIM1Q9BR11 485 aa20.27■□□□□ 0.84
UPF1-212ENST00000601689 RAPGEFL1Q9UHV5 662 aa20.27■□□□□ 0.84
Retrieved 100 of 20,778 RNA–protein pairs in 32.2 ms