RNA–Protein interactions for RNA: ENST00000601341.5

VRK3-223, Transcript of vaccinia related kinase 3, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene VRK3, Length 1,777 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-223ENST00000601341 TMEM169Q96HH4 297 aa12.23□□□□□ -0.45
VRK3-223ENST00000601341 SLC9A7Q96T83 725 aa12.23□□□□□ -0.45
VRK3-223ENST00000601341 ZCWPW1Q9H0M4 648 aa12.23□□□□□ -0.45
VRK3-223ENST00000601341 EPB41L4BQ9H329 900 aa12.23□□□□□ -0.45
VRK3-223ENST00000601341 AAASQ9NRG9 546 aa12.23□□□□□ -0.45
VRK3-223ENST00000601341 KRT82Q9NSB4 513 aa12.23□□□□□ -0.45
VRK3-223ENST00000601341 SPG21Q9NZD8 308 aa12.23□□□□□ -0.45
VRK3-223ENST00000601341 ANAPC7Q9UJX3 599 aa12.23□□□□□ -0.45
VRK3-223ENST00000601341 ALPK3Q96L96 1907 aa12.23□□□□□ -0.45
VRK3-223ENST00000601341 COL4A6Q14031 1691 aa12.23□□□□□ -0.45
VRK3-223ENST00000601341 TCRBV5S1A1TA0A578 114 aa12.23□□□□□ -0.45
VRK3-223ENST00000601341 SIGLEC16A6NMB1 481 aa12.23□□□□□ -0.45
VRK3-223ENST00000601341 E5RJQ4 531 aa12.23□□□□□ -0.45
VRK3-223ENST00000601341 GOLGA8SH3BPF8 625 aa12.23□□□□□ -0.45
VRK3-223ENST00000601341 PSTPIP1O43586 416 aa12.23□□□□□ -0.45
VRK3-223ENST00000601341 KIAA0754O94854 1291 aa12.23□□□□□ -0.45
VRK3-223ENST00000601341 EFEMP2O95967 443 aa12.23□□□□□ -0.45
VRK3-223ENST00000601341 KRT3P12035 628 aa12.23□□□□□ -0.45
VRK3-223ENST00000601341 ITIH2P19823 946 aa12.23□□□□□ -0.45
VRK3-223ENST00000601341 PPM1AP35813 382 aa12.23□□□□□ -0.45
VRK3-223ENST00000601341 PLTPP55058 493 aa12.23□□□□□ -0.45
VRK3-223ENST00000601341 ODF2Q5BJF6 829 aa12.23□□□□□ -0.45
VRK3-223ENST00000601341 CLEC20AQ6ZU45 233 aa12.23□□□□□ -0.45
VRK3-223ENST00000601341 PIGZQ86VD9 579 aa12.23□□□□□ -0.45
VRK3-223ENST00000601341 SPATA2LQ8IUW3 424 aaPredicted RBP12.23□□□□□ -0.45
VRK3-223ENST00000601341 HERC6Q8IVU3 1022 aa12.23□□□□□ -0.45
VRK3-223ENST00000601341 CCDC105Q8IYK2 499 aa12.23□□□□□ -0.45
VRK3-223ENST00000601341 SLC39A11Q8N1S5 342 aa12.23□□□□□ -0.45
VRK3-223ENST00000601341 FIBCD1Q8N539 461 aa12.23□□□□□ -0.45
VRK3-223ENST00000601341 COLGALT1Q8NBJ5 622 aa12.23□□□□□ -0.45
VRK3-223ENST00000601341 ZNF473Q8WTR7 871 aaKnown RBP12.23□□□□□ -0.45
VRK3-223ENST00000601341 TMEM209Q96SK2 561 aa12.23□□□□□ -0.45
VRK3-223ENST00000601341 TJP2Q9UDY2 1190 aa12.23□□□□□ -0.45
VRK3-223ENST00000601341 PCDHB12Q9Y5F1 795 aa12.23□□□□□ -0.45
VRK3-223ENST00000601341 NR2E3Q9Y5X4 410 aa12.23□□□□□ -0.45
VRK3-223ENST00000601341 TMEM191CA6NGB0 347 aa12.22□□□□□ -0.45
VRK3-223ENST00000601341 TRIM66O15016 1216 aa12.22□□□□□ -0.45
VRK3-223ENST00000601341 RARAP10276 462 aa12.22□□□□□ -0.45
VRK3-223ENST00000601341 ATP2A2P16615 1042 aaKnown RBP12.22□□□□□ -0.45
VRK3-223ENST00000601341 RPL21P46778 160 aaKnown RBP12.22□□□□□ -0.45
VRK3-223ENST00000601341 MARCKSL1P49006 195 aa12.22□□□□□ -0.45
VRK3-223ENST00000601341 MAP3K7CLP57077 242 aa12.22□□□□□ -0.45
VRK3-223ENST00000601341 CALCOCO2Q13137 446 aa12.22□□□□□ -0.45
VRK3-223ENST00000601341 SLC39A12Q504Y0 691 aa12.22□□□□□ -0.45
VRK3-223ENST00000601341 TNFAIP8L3Q5GJ75 292 aa12.22□□□□□ -0.45
VRK3-223ENST00000601341 RTP2Q5QGT7 225 aa12.22□□□□□ -0.45
VRK3-223ENST00000601341 PPP1R15BQ5SWA1 713 aa12.22□□□□□ -0.45
VRK3-223ENST00000601341 OR6B2Q6IFH4 312 aa12.22□□□□□ -0.45
VRK3-223ENST00000601341 KIAA1841Q6NSI8 718 aa12.22□□□□□ -0.45
VRK3-223ENST00000601341 TTC27Q6P3X3 843 aa12.22□□□□□ -0.45
VRK3-223ENST00000601341 TAX1BP1Q86VP1 789 aa12.22□□□□□ -0.45
VRK3-223ENST00000601341 RNF168Q8IYW5 571 aaPredicted RBP12.22□□□□□ -0.45
VRK3-223ENST00000601341 BBOF1Q8ND07 529 aa12.22□□□□□ -0.45
VRK3-223ENST00000601341 OR2W6PQ8NHA6 318 aa12.22□□□□□ -0.45
VRK3-223ENST00000601341 KCTD13Q8WZ19 329 aa12.22□□□□□ -0.45
VRK3-223ENST00000601341 B3GALT6Q96L58 329 aa12.22□□□□□ -0.45
VRK3-223ENST00000601341 MCEEQ96PE7 176 aa12.22□□□□□ -0.45
VRK3-223ENST00000601341 RAD9AQ99638 391 aa12.22□□□□□ -0.45
VRK3-223ENST00000601341 FOXP3Q9BZS1 431 aa12.22□□□□□ -0.45
VRK3-223ENST00000601341 CCDC134Q9H6E4 229 aa12.22□□□□□ -0.45
VRK3-223ENST00000601341 CSNK1G1Q9HCP0 422 aa12.22□□□□□ -0.45
VRK3-223ENST00000601341 TMLHEQ9NVH6 421 aa12.22□□□□□ -0.45
VRK3-223ENST00000601341 STK39Q9UEW8 545 aa12.22□□□□□ -0.45
VRK3-223ENST00000601341 IP6K2Q9UHH9 426 aa12.22□□□□□ -0.45
VRK3-223ENST00000601341 NOVA2Q9UNW9 492 aaKnown RBP12.22□□□□□ -0.45
VRK3-223ENST00000601341 TMEM110-MUSTN1A8MSY1 372 aa12.21□□□□□ -0.45
VRK3-223ENST00000601341 BEST1O76090 585 aa12.21□□□□□ -0.45
VRK3-223ENST00000601341 GAS8O95995 478 aa12.21□□□□□ -0.45
VRK3-223ENST00000601341 SOD2P04179 222 aa12.21□□□□□ -0.45
VRK3-223ENST00000601341 BDNFP23560 247 aa12.21□□□□□ -0.45
VRK3-223ENST00000601341 HPDP32754 393 aaPredicted RBP12.21□□□□□ -0.45
VRK3-223ENST00000601341 MMP13P45452 471 aa12.21□□□□□ -0.45
VRK3-223ENST00000601341 MAGOHP61326 146 aaKnown RBP12.21□□□□□ -0.45
VRK3-223ENST00000601341 RPL7AP62424 266 aaKnown RBP12.21□□□□□ -0.45
VRK3-223ENST00000601341 SMARCB1Q12824 385 aa12.21□□□□□ -0.45
VRK3-223ENST00000601341 FAM102AQ5T9C2 384 aaPredicted RBP12.21□□□□□ -0.45
VRK3-223ENST00000601341 TAS1R1Q7RTX1 841 aa12.21□□□□□ -0.45
VRK3-223ENST00000601341 DDX53Q86TM3 631 aaKnown RBP12.21□□□□□ -0.45
VRK3-223ENST00000601341 RELL1Q8IUW5 271 aa12.21□□□□□ -0.45
VRK3-223ENST00000601341 SCUBE3Q8IX30 993 aa12.21□□□□□ -0.45
VRK3-223ENST00000601341 ZDHHC14Q8IZN3 488 aa12.21□□□□□ -0.45
VRK3-223ENST00000601341 GADD45GIP1Q8TAE8 222 aaPredicted RBP12.21□□□□□ -0.45
VRK3-223ENST00000601341 FUBP3Q96I24 572 aaKnown RBP eCLIP12.21□□□□□ -0.45
VRK3-223ENST00000601341 BTBD6Q96KE9 485 aa12.21□□□□□ -0.45
VRK3-223ENST00000601341 SMOQ99835 787 aa12.21□□□□□ -0.45
VRK3-223ENST00000601341 TRIM31Q9BZY9 425 aa12.21□□□□□ -0.45
VRK3-223ENST00000601341 TRIM7Q9C029 511 aa12.21□□□□□ -0.45
VRK3-223ENST00000601341 LRRC4Q9HBW1 653 aa12.21□□□□□ -0.45
VRK3-223ENST00000601341 DMAP1Q9NPF5 467 aaPredicted RBP12.21□□□□□ -0.45
VRK3-223ENST00000601341 CHST7Q9NS84 486 aa12.21□□□□□ -0.45
VRK3-223ENST00000601341 SNX24Q9Y343 169 aa12.21□□□□□ -0.45
VRK3-223ENST00000601341 E7EVH7 732 aa12.2□□□□□ -0.46
VRK3-223ENST00000601341 PIK3R2O00459 728 aa12.2□□□□□ -0.46
VRK3-223ENST00000601341 PAPSS1O43252 624 aaPredicted RBP12.2□□□□□ -0.46
VRK3-223ENST00000601341 TLL1O43897 1013 aa12.2□□□□□ -0.46
VRK3-223ENST00000601341 TBC1D4O60343 1298 aa12.2□□□□□ -0.46
VRK3-223ENST00000601341 GABBR2O75899 941 aa12.2□□□□□ -0.46
VRK3-223ENST00000601341 PROSCO94903 275 aa12.2□□□□□ -0.46
VRK3-223ENST00000601341 FSBPO95073 299 aa12.2□□□□□ -0.46
VRK3-223ENST00000601341 GJB6O95452 261 aa12.2□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 19.1 ms