RNA–Protein interactions for RNA: ENST00000597995.1

TRIM28-212, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 702 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-212ENST00000597995 BBS7Q8IWZ6 715 aa13.25□□□□□ -0.29
TRIM28-212ENST00000597995 ZNF513Q8N8E2 541 aaPredicted RBP13.25□□□□□ -0.29
TRIM28-212ENST00000597995 NAT16Q8N8M0 369 aa13.25□□□□□ -0.29
TRIM28-212ENST00000597995 TERB1Q8NA31 727 aa13.25□□□□□ -0.29
TRIM28-212ENST00000597995 SCAMP5Q8TAC9 235 aa13.25□□□□□ -0.29
TRIM28-212ENST00000597995 GATA6Q92908 595 aa13.25□□□□□ -0.29
TRIM28-212ENST00000597995 SMARCD1Q96GM5 515 aa13.25□□□□□ -0.29
TRIM28-212ENST00000597995 MED10Q9BTT4 135 aa13.25□□□□□ -0.29
TRIM28-212ENST00000597995 SCNM1Q9BWG6 230 aa13.25□□□□□ -0.29
TRIM28-212ENST00000597995 KCTD10Q9H3F6 313 aa13.25□□□□□ -0.29
TRIM28-212ENST00000597995 DMAC2Q9NW81 257 aa13.25□□□□□ -0.29
TRIM28-212ENST00000597995 USP25Q9UHP3 1055 aa13.25□□□□□ -0.29
TRIM28-212ENST00000597995 SLC6A14Q9UN76 642 aa13.25□□□□□ -0.29
TRIM28-212ENST00000597995 A0A1W2PQ27 194 aa13.24□□□□□ -0.29
TRIM28-212ENST00000597995 A0A1W2PQ64 194 aa13.24□□□□□ -0.29
TRIM28-212ENST00000597995 A0A1W2PQD8 194 aa13.24□□□□□ -0.29
TRIM28-212ENST00000597995 ZNF217O75362 1048 aa13.24□□□□□ -0.29
TRIM28-212ENST00000597995 TOP3BO95985 862 aaKnown RBP13.24□□□□□ -0.29
TRIM28-212ENST00000597995 RPN1P04843 607 aaKnown RBP13.24□□□□□ -0.29
TRIM28-212ENST00000597995 GABRG2P18507 467 aa13.24□□□□□ -0.29
TRIM28-212ENST00000597995 ITPKAP23677 461 aa13.24□□□□□ -0.29
TRIM28-212ENST00000597995 NTSR1P30989 418 aa13.24□□□□□ -0.29
TRIM28-212ENST00000597995 SYKP43405 635 aa13.24□□□□□ -0.29
TRIM28-212ENST00000597995 MAPK8P45983 427 aa13.24□□□□□ -0.29
TRIM28-212ENST00000597995 CASP4P49662 377 aa13.24□□□□□ -0.29
TRIM28-212ENST00000597995 CDH8P55286 799 aa13.24□□□□□ -0.29
TRIM28-212ENST00000597995 CLDN10P78369 228 aa13.24□□□□□ -0.29
TRIM28-212ENST00000597995 GFPT1Q06210 699 aaPredicted RBP13.24□□□□□ -0.29
TRIM28-212ENST00000597995 DPYDQ12882 1025 aa13.24□□□□□ -0.29
TRIM28-212ENST00000597995 ANO4Q32M45 955 aa13.24□□□□□ -0.29
TRIM28-212ENST00000597995 ZNF699Q32M78 642 aa13.24□□□□□ -0.29
TRIM28-212ENST00000597995 ZNF667Q5HYK9 610 aa13.24□□□□□ -0.29
TRIM28-212ENST00000597995 HTR3DQ70Z44 454 aa13.24□□□□□ -0.29
TRIM28-212ENST00000597995 SCAND2PQ9GZW5 306 aaPredicted RBP13.24□□□□□ -0.29
TRIM28-212ENST00000597995 FBXO44Q9H4M3 255 aa13.24□□□□□ -0.29
TRIM28-212ENST00000597995 SMYD3Q9H7B4 428 aa13.24□□□□□ -0.29
TRIM28-212ENST00000597995 CCSER2Q9H7U1 834 aa13.24□□□□□ -0.29
TRIM28-212ENST00000597995 CAPN10Q9HC96 672 aa13.24□□□□□ -0.29
TRIM28-212ENST00000597995 ZDHHC4Q9NPG8 344 aa13.24□□□□□ -0.29
TRIM28-212ENST00000597995 EXOC1Q9NV70 894 aa13.24□□□□□ -0.29
TRIM28-212ENST00000597995 GMIPQ9P107 970 aa13.24□□□□□ -0.29
TRIM28-212ENST00000597995 NEUROG3Q9Y4Z2 214 aa13.24□□□□□ -0.29
TRIM28-212ENST00000597995 CACNA1EQ15878 2313 aa13.23□□□□□ -0.29
TRIM28-212ENST00000597995 ZZEF1O43149 2961 aa13.23□□□□□ -0.29
TRIM28-212ENST00000597995 ZBTB24O43167 697 aaPredicted RBP13.23□□□□□ -0.29
TRIM28-212ENST00000597995 EXOC3O60645 756 aa13.23□□□□□ -0.29
TRIM28-212ENST00000597995 AP1G2O75843 785 aa13.23□□□□□ -0.29
TRIM28-212ENST00000597995 C4BPAP04003 597 aaKnown RBP13.23□□□□□ -0.29
TRIM28-212ENST00000597995 CFIP05156 583 aa13.23□□□□□ -0.29
TRIM28-212ENST00000597995 SERPINF2P08697 491 aa13.23□□□□□ -0.29
TRIM28-212ENST00000597995 HOXB2P14652 356 aa13.23□□□□□ -0.29
TRIM28-212ENST00000597995 ATXN3P54252 364 aaPredicted RBP13.23□□□□□ -0.29
TRIM28-212ENST00000597995 RPL6Q02878 288 aaKnown RBP13.23□□□□□ -0.29
TRIM28-212ENST00000597995 ZNF33AQ06730 810 aa13.23□□□□□ -0.29
TRIM28-212ENST00000597995 C10orf76Q5T2E6 689 aa13.23□□□□□ -0.29
TRIM28-212ENST00000597995 SDE2Q6IQ49 451 aa13.23□□□□□ -0.29
TRIM28-212ENST00000597995 KRBA2Q6ZNG9 492 aa13.23□□□□□ -0.29
TRIM28-212ENST00000597995 FUKQ8N0W3 1084 aa13.23□□□□□ -0.29
TRIM28-212ENST00000597995 CRYBG2Q8N1P7 616 aa13.23□□□□□ -0.29
TRIM28-212ENST00000597995 HDDC3Q8N4P3 179 aa13.23□□□□□ -0.29
TRIM28-212ENST00000597995 GOLGA5Q8TBA6 731 aa13.23□□□□□ -0.29
TRIM28-212ENST00000597995 PARD3BQ8TEW8 1205 aa13.23□□□□□ -0.29
TRIM28-212ENST00000597995 TMEM174Q8WUU8 243 aa13.23□□□□□ -0.29
TRIM28-212ENST00000597995 XPO6Q96QU8 1125 aaKnown RBP13.23□□□□□ -0.29
TRIM28-212ENST00000597995 KLF16Q9BXK1 252 aaPredicted RBP13.23□□□□□ -0.29
TRIM28-212ENST00000597995 NACA2Q9H009 215 aa13.23□□□□□ -0.29
TRIM28-212ENST00000597995 CSNK1G1Q9HCP0 422 aa13.23□□□□□ -0.29
TRIM28-212ENST00000597995 WDR35Q9P2L0 1181 aa13.23□□□□□ -0.29
TRIM28-212ENST00000597995 HCN2Q9UL51 889 aa13.23□□□□□ -0.29
TRIM28-212ENST00000597995 ATP6V1DQ9Y5K8 247 aa13.23□□□□□ -0.29
TRIM28-212ENST00000597995 IGF2RP11717 2491 aa13.23□□□□□ -0.29
TRIM28-212ENST00000597995 CEP192Q8TEP8 1941 aa13.22□□□□□ -0.29
TRIM28-212ENST00000597995 IGHV1OR15-9A0A0B4J2B8 117 aa13.22□□□□□ -0.29
TRIM28-212ENST00000597995 A0A1W2PQF6 199 aa13.22□□□□□ -0.29
TRIM28-212ENST00000597995 H0Y626 953 aa13.22□□□□□ -0.29
TRIM28-212ENST00000597995 CACNG3O60359 315 aa13.22□□□□□ -0.29
TRIM28-212ENST00000597995 GREM1O60565 184 aa13.22□□□□□ -0.29
TRIM28-212ENST00000597995 TLR5O60602 858 aa13.22□□□□□ -0.29
TRIM28-212ENST00000597995 ZNF202O95125 648 aa13.22□□□□□ -0.29
TRIM28-212ENST00000597995 TRIM16O95361 564 aa13.22□□□□□ -0.29
TRIM28-212ENST00000597995 MYL1P05976 194 aa13.22□□□□□ -0.29
TRIM28-212ENST00000597995 P4HA1P13674 534 aa13.22□□□□□ -0.29
TRIM28-212ENST00000597995 RDXP35241 583 aaKnown RBP13.22□□□□□ -0.29
TRIM28-212ENST00000597995 BIRC3Q13489 604 aa13.22□□□□□ -0.29
TRIM28-212ENST00000597995 NCOA4Q13772 614 aa13.22□□□□□ -0.29
TRIM28-212ENST00000597995 HNRNPDQ14103 355 aaKnown RBP13.22□□□□□ -0.29
TRIM28-212ENST00000597995 SGSM1Q2NKQ1 1148 aa13.22□□□□□ -0.29
TRIM28-212ENST00000597995 GRAMD4Q6IC98 578 aa13.22□□□□□ -0.29
TRIM28-212ENST00000597995 SLC9A9Q8IVB4 645 aa13.22□□□□□ -0.29
TRIM28-212ENST00000597995 ZMIZ2Q8NF64 920 aa13.22□□□□□ -0.29
TRIM28-212ENST00000597995 WBP2Q969T9 261 aa13.22□□□□□ -0.29
TRIM28-212ENST00000597995 SMOQ99835 787 aa13.22□□□□□ -0.29
TRIM28-212ENST00000597995 SDCBP2Q9H190 292 aa13.22□□□□□ -0.29
TRIM28-212ENST00000597995 CD248Q9HCU0 757 aa13.22□□□□□ -0.29
TRIM28-212ENST00000597995 CYLDQ9NQC7 956 aa13.22□□□□□ -0.29
TRIM28-212ENST00000597995 TLR8Q9NR97 1041 aaKnown RBP13.22□□□□□ -0.29
TRIM28-212ENST00000597995 KRT82Q9NSB4 513 aa13.22□□□□□ -0.29
TRIM28-212ENST00000597995 MARK1Q9P0L2 795 aa13.22□□□□□ -0.29
TRIM28-212ENST00000597995 CALCOCO1Q9P1Z2 691 aa13.22□□□□□ -0.29
TRIM28-212ENST00000597995 RALYQ9UKM9 306 aaKnown RBP13.22□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 15.4 ms