RNA–Protein interactions for RNA: ENST00000596332.1

LIG1-210, Transcript of DNA ligase 1, humanhuman

TSL 2

Gene LIG1, Length 584 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-210ENST00000596332 TCF3P15923 654 aa11.09□□□□□ -0.63
LIG1-210ENST00000596332 HDCP19113 662 aa11.09□□□□□ -0.63
LIG1-210ENST00000596332 TNFAIP3P21580 790 aa11.09□□□□□ -0.63
LIG1-210ENST00000596332 GBP2P32456 591 aaPredicted RBP11.09□□□□□ -0.63
LIG1-210ENST00000596332 TUBP50607 506 aa11.09□□□□□ -0.63
LIG1-210ENST00000596332 GSCP56915 257 aaPredicted RBP11.09□□□□□ -0.63
LIG1-210ENST00000596332 YWHAGP61981 247 aaKnown RBP eCLIP11.09□□□□□ -0.63
LIG1-210ENST00000596332 SLC6A3Q01959 620 aa11.09□□□□□ -0.63
LIG1-210ENST00000596332 TAF12Q16514 161 aa11.09□□□□□ -0.63
LIG1-210ENST00000596332 TJAP1Q5JTD0 557 aa11.09□□□□□ -0.63
LIG1-210ENST00000596332 KLHDC10Q6PID8 442 aa11.09□□□□□ -0.63
LIG1-210ENST00000596332 TRIM72Q6ZMU5 477 aa11.09□□□□□ -0.63
LIG1-210ENST00000596332 MMS22LQ6ZRQ5 1243 aa11.09□□□□□ -0.63
LIG1-210ENST00000596332 BEND5Q7L4P6 421 aa11.09□□□□□ -0.63
LIG1-210ENST00000596332 ERICH1Q86X53 443 aa11.09□□□□□ -0.63
LIG1-210ENST00000596332 SLC44A3Q8N4M1 653 aa11.09□□□□□ -0.63
LIG1-210ENST00000596332 PDZD8Q8NEN9 1154 aa11.09□□□□□ -0.63
LIG1-210ENST00000596332 ZNF397Q8NF99 534 aaPredicted RBP11.09□□□□□ -0.63
LIG1-210ENST00000596332 EDEM1Q92611 657 aa11.09□□□□□ -0.63
LIG1-210ENST00000596332 SMARCD2Q92925 531 aa11.09□□□□□ -0.63
LIG1-210ENST00000596332 NT5C3BQ969T7 300 aa11.09□□□□□ -0.63
LIG1-210ENST00000596332 C18orf8Q96DM3 657 aa11.09□□□□□ -0.63
LIG1-210ENST00000596332 SLC2A13Q96QE2 648 aa11.09□□□□□ -0.63
LIG1-210ENST00000596332 SMOC2Q9H3U7 446 aa11.09□□□□□ -0.63
LIG1-210ENST00000596332 KCNK12Q9HB15 430 aa11.09□□□□□ -0.63
LIG1-210ENST00000596332 TLR8Q9NR97 1041 aaKnown RBP11.09□□□□□ -0.63
LIG1-210ENST00000596332 ST7Q9NRC1 585 aa11.09□□□□□ -0.63
LIG1-210ENST00000596332 GKN1Q9NS71 199 aa11.09□□□□□ -0.63
LIG1-210ENST00000596332 NAALADL1Q9UQQ1 740 aa11.09□□□□□ -0.63
LIG1-210ENST00000596332 ZFP37Q9Y6Q3 630 aaPredicted RBP11.09□□□□□ -0.63
LIG1-210ENST00000596332 TCF20Q9UGU0 1960 aaKnown RBP11.08□□□□□ -0.64
LIG1-210ENST00000596332 BDP1A6H8Y1 2624 aa11.08□□□□□ -0.64
LIG1-210ENST00000596332 SSU72P8A0A1W2PR75 194 aa11.08□□□□□ -0.64
LIG1-210ENST00000596332 GOLGA6L3A6NEY3 463 aa11.08□□□□□ -0.64
LIG1-210ENST00000596332 ARNTLO00327 626 aa11.08□□□□□ -0.64
LIG1-210ENST00000596332 TLR5O60602 858 aa11.08□□□□□ -0.64
LIG1-210ENST00000596332 LTFP02788 710 aa11.08□□□□□ -0.64
LIG1-210ENST00000596332 KLKB1P03952 638 aa11.08□□□□□ -0.64
LIG1-210ENST00000596332 PFKLP17858 780 aa11.08□□□□□ -0.64
LIG1-210ENST00000596332 TFE3P19532 575 aaPredicted RBP11.08□□□□□ -0.64
LIG1-210ENST00000596332 DDX6P26196 483 aaKnown RBP eCLIP11.08□□□□□ -0.64
LIG1-210ENST00000596332 SCNN1AP37088 669 aa11.08□□□□□ -0.64
LIG1-210ENST00000596332 SLC8A3P57103 927 aa11.08□□□□□ -0.64
LIG1-210ENST00000596332 ZNF268Q14587 947 aaPredicted RBP11.08□□□□□ -0.64
LIG1-210ENST00000596332 RAB6CQ53S08 254 aa11.08□□□□□ -0.64
LIG1-210ENST00000596332 HECTD3Q5T447 861 aa11.08□□□□□ -0.64
LIG1-210ENST00000596332 IER5LQ5T953 404 aa11.08□□□□□ -0.64
LIG1-210ENST00000596332 MSANTD2Q6P1R3 559 aa11.08□□□□□ -0.64
LIG1-210ENST00000596332 VITQ6UXI7 678 aa11.08□□□□□ -0.64
LIG1-210ENST00000596332 SLC26A9Q7LBE3 791 aa11.08□□□□□ -0.64
LIG1-210ENST00000596332 ARHGAP30Q7Z6I6 1101 aaPredicted RBP11.08□□□□□ -0.64
LIG1-210ENST00000596332 PHLDB2Q86SQ0 1253 aa11.08□□□□□ -0.64
LIG1-210ENST00000596332 MRPS31Q92665 395 aaKnown RBP11.08□□□□□ -0.64
LIG1-210ENST00000596332 ASIC4Q96FT7 647 aa11.08□□□□□ -0.64
LIG1-210ENST00000596332 RAB6CQ9H0N0 254 aa11.08□□□□□ -0.64
LIG1-210ENST00000596332 ASNSD1Q9NWL6 643 aa11.08□□□□□ -0.64
LIG1-210ENST00000596332 EHD2Q9NZN4 543 aa11.08□□□□□ -0.64
LIG1-210ENST00000596332 NAGPAQ9UK23 515 aa11.08□□□□□ -0.64
LIG1-210ENST00000596332 ARHGAP26Q9UNA1 814 aa11.08□□□□□ -0.64
LIG1-210ENST00000596332 BZW2Q9Y6E2 419 aaKnown RBP11.08□□□□□ -0.64
LIG1-210ENST00000596332 NUMBLQ9Y6R0 609 aa11.08□□□□□ -0.64
LIG1-210ENST00000596332 TRIOO75962 3097 aa11.07□□□□□ -0.64
LIG1-210ENST00000596332 MYH10P35580 1976 aa11.07□□□□□ -0.64
LIG1-210ENST00000596332 I6L893 689 aaPredicted RBP11.07□□□□□ -0.64
LIG1-210ENST00000596332 ECI2O75521 394 aa11.07□□□□□ -0.64
LIG1-210ENST00000596332 GRAP2O75791 330 aa11.07□□□□□ -0.64
LIG1-210ENST00000596332 LCA5LO95447 670 aa11.07□□□□□ -0.64
LIG1-210ENST00000596332 IGLV3-27P01718 113 aa11.07□□□□□ -0.64
LIG1-210ENST00000596332 FTLP02792 175 aaPredicted RBP11.07□□□□□ -0.64
LIG1-210ENST00000596332 CCDC172P0C7W6 258 aa11.07□□□□□ -0.64
LIG1-210ENST00000596332 RRM1P23921 792 aa11.07□□□□□ -0.64
LIG1-210ENST00000596332 FLT3P36888 993 aa11.07□□□□□ -0.64
LIG1-210ENST00000596332 PSEN1P49768 467 aa11.07□□□□□ -0.64
LIG1-210ENST00000596332 YWHAZP63104 245 aaKnown RBP11.07□□□□□ -0.64
LIG1-210ENST00000596332 GFPT1Q06210 699 aaPredicted RBP11.07□□□□□ -0.64
LIG1-210ENST00000596332 FCHO2Q0JRZ9 810 aa11.07□□□□□ -0.64
LIG1-210ENST00000596332 GSE1Q14687 1217 aa11.07□□□□□ -0.64
LIG1-210ENST00000596332 MTF1Q14872 753 aa11.07□□□□□ -0.64
LIG1-210ENST00000596332 ZNF77Q15935 545 aa11.07□□□□□ -0.64
LIG1-210ENST00000596332 OR6B2Q6IFH4 312 aa11.07□□□□□ -0.64
LIG1-210ENST00000596332 PLEKHA7Q6IQ23 1121 aa11.07□□□□□ -0.64
LIG1-210ENST00000596332 ARCQ7LC44 396 aa11.07□□□□□ -0.64
LIG1-210ENST00000596332 RNF135Q8IUD6 432 aa11.07□□□□□ -0.64
LIG1-210ENST00000596332 CNGA4Q8IV77 575 aa11.07□□□□□ -0.64
LIG1-210ENST00000596332 FMNL3Q8IVF7 1028 aa11.07□□□□□ -0.64
LIG1-210ENST00000596332 MFSD6LQ8IWD5 586 aa11.07□□□□□ -0.64
LIG1-210ENST00000596332 DEFB106AQ8N104 65 aa11.07□□□□□ -0.64
LIG1-210ENST00000596332 SIX6OS1Q8N1H7 587 aa11.07□□□□□ -0.64
LIG1-210ENST00000596332 PLCD3Q8N3E9 789 aa11.07□□□□□ -0.64
LIG1-210ENST00000596332 TDRD5Q8NAT2 981 aaKnown RBP11.07□□□□□ -0.64
LIG1-210ENST00000596332 SPC24Q8NBT2 197 aa11.07□□□□□ -0.64
LIG1-210ENST00000596332 JOSD2Q8TAC2 188 aa11.07□□□□□ -0.64
LIG1-210ENST00000596332 ELSPBP1Q96BH3 223 aa11.07□□□□□ -0.64
LIG1-210ENST00000596332 CHFRQ96EP1 664 aa11.07□□□□□ -0.64
LIG1-210ENST00000596332 SLC39A13Q96H72 371 aa11.07□□□□□ -0.64
LIG1-210ENST00000596332 VCPIP1Q96JH7 1222 aa11.07□□□□□ -0.64
LIG1-210ENST00000596332 PDLIM2Q96JY6 352 aa11.07□□□□□ -0.64
LIG1-210ENST00000596332 PANX2Q96RD6 677 aa11.07□□□□□ -0.64
LIG1-210ENST00000596332 KXD1Q9BQD3 176 aa11.07□□□□□ -0.64
LIG1-210ENST00000596332 C11orf70Q9BRQ4 267 aa11.07□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 45.5 ms