RNA–Protein interactions for RNA: ENST00000593074.5

CLIP3-206, Transcript of CAP-Gly domain containing linker protein 3, humanhuman

APPRIS P1 TSL 2 BASIC

Gene CLIP3, Length 2,080 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3-206ENST00000593074 WNT8BQ93098 351 aa20.5■□□□□ 0.87
CLIP3-206ENST00000593074 SENP6Q9GZR1 1112 aaPredicted RBP20.5■□□□□ 0.87
CLIP3-206ENST00000593074 RASSF4Q9H2L5 321 aa20.5■□□□□ 0.87
CLIP3-206ENST00000593074 FAM105AQ9NUU6 356 aa20.5■□□□□ 0.87
CLIP3-206ENST00000593074 SLC24A2Q9UI40 661 aa20.5■□□□□ 0.87
CLIP3-206ENST00000593074 XPO7Q9UIA9 1087 aaKnown RBP20.5■□□□□ 0.87
CLIP3-206ENST00000593074 SCN10AQ9Y5Y9 1956 aa20.5■□□□□ 0.87
CLIP3-206ENST00000593074 CFAP69A5D8W1 941 aa20.5■□□□□ 0.87
CLIP3-206ENST00000593074 RASA4BC9J798 803 aa20.5■□□□□ 0.87
CLIP3-206ENST00000593074 XPO1O14980 1071 aaKnown RBP20.5■□□□□ 0.87
CLIP3-206ENST00000593074 RASA4O43374 803 aa20.5■□□□□ 0.87
CLIP3-206ENST00000593074 LCP1P13796 627 aa20.5■□□□□ 0.87
CLIP3-206ENST00000593074 NRLP54845 237 aa20.5■□□□□ 0.87
CLIP3-206ENST00000593074 BASP1P80723 227 aaKnown RBP20.5■□□□□ 0.87
CLIP3-206ENST00000593074 KCNA10Q16322 511 aa20.5■□□□□ 0.87
CLIP3-206ENST00000593074 EFHC2Q5JST6 749 aa20.5■□□□□ 0.87
CLIP3-206ENST00000593074 C1orf228Q6PIY5 440 aa20.5■□□□□ 0.87
CLIP3-206ENST00000593074 PIGWQ7Z7B1 504 aa20.5■□□□□ 0.87
CLIP3-206ENST00000593074 RPAINQ86UA6 219 aa20.5■□□□□ 0.87
CLIP3-206ENST00000593074 ANKMY2Q8IV38 441 aa20.5■□□□□ 0.87
CLIP3-206ENST00000593074 OTUD6BQ8N6M0 293 aa20.5■□□□□ 0.87
CLIP3-206ENST00000593074 PYROXD1Q8WU10 500 aa20.5■□□□□ 0.87
CLIP3-206ENST00000593074 CABS1Q96KC9 395 aa20.5■□□□□ 0.87
CLIP3-206ENST00000593074 HNRNPABQ99729 332 aaKnown RBP20.5■□□□□ 0.87
CLIP3-206ENST00000593074 KCNK9Q9NPC2 374 aa20.5■□□□□ 0.87
CLIP3-206ENST00000593074 H7C0C1 242 aa20.49■□□□□ 0.87
CLIP3-206ENST00000593074 FAM163BP0C2L3 166 aa20.49■□□□□ 0.87
CLIP3-206ENST00000593074 TSHRP16473 764 aa20.49■□□□□ 0.87
CLIP3-206ENST00000593074 CCND3P30281 292 aaPredicted RBP20.49■□□□□ 0.87
CLIP3-206ENST00000593074 ATP5OP48047 213 aa20.49■□□□□ 0.87
CLIP3-206ENST00000593074 BCAR1P56945 870 aa20.49■□□□□ 0.87
CLIP3-206ENST00000593074 RNASELQ05823 741 aaKnown RBP20.49■□□□□ 0.87
CLIP3-206ENST00000593074 NOGQ13253 232 aa20.49■□□□□ 0.87
CLIP3-206ENST00000593074 KCNJ11Q14654 390 aa20.49■□□□□ 0.87
CLIP3-206ENST00000593074 LRRC14Q15048 493 aa20.49■□□□□ 0.87
CLIP3-206ENST00000593074 PDIK1LQ8N165 341 aa20.49■□□□□ 0.87
CLIP3-206ENST00000593074 ZFP42Q96MM3 310 aa20.49■□□□□ 0.87
CLIP3-206ENST00000593074 GPBP1L1Q9HC44 474 aaPredicted RBP20.49■□□□□ 0.87
CLIP3-206ENST00000593074 BCLAF3A2AJT9 711 aaKnown RBP20.49■□□□□ 0.87
CLIP3-206ENST00000593074 GPR182O15218 404 aa20.49■□□□□ 0.87
CLIP3-206ENST00000593074 L1CAMP32004 1257 aa20.49■□□□□ 0.87
CLIP3-206ENST00000593074 PHBP35232 272 aa20.49■□□□□ 0.87
CLIP3-206ENST00000593074 CBLBQ13191 982 aa20.49■□□□□ 0.87
CLIP3-206ENST00000593074 CAPN12Q6ZSI9 719 aa20.49■□□□□ 0.87
CLIP3-206ENST00000593074 ANKRD42Q8N9B4 389 aa20.49■□□□□ 0.87
CLIP3-206ENST00000593074 MGARPQ8TDB4 240 aa20.49■□□□□ 0.87
CLIP3-206ENST00000593074 DYDC1Q8WWB3 177 aa20.49■□□□□ 0.87
CLIP3-206ENST00000593074 PPM1EQ8WY54 764 aa20.49■□□□□ 0.87
CLIP3-206ENST00000593074 NSRP1Q9H0G5 558 aaKnown RBP20.49■□□□□ 0.87
CLIP3-206ENST00000593074 SLC38A7Q9NVC3 462 aa20.49■□□□□ 0.87
CLIP3-206ENST00000593074 RABGEF1Q9UJ41 708 aa20.49■□□□□ 0.87
CLIP3-206ENST00000593074 POC1B-GALNT4F8VUJ3 575 aa20.48■□□□□ 0.87
CLIP3-206ENST00000593074 CHADO15335 359 aa20.48■□□□□ 0.87
CLIP3-206ENST00000593074 PRKAR2AP13861 404 aaKnown RBP20.48■□□□□ 0.87
CLIP3-206ENST00000593074 SP3Q02447 781 aa20.48■□□□□ 0.87
CLIP3-206ENST00000593074 ARHGEF18Q6ZSZ5 1173 aa20.48■□□□□ 0.87
CLIP3-206ENST00000593074 STRADAQ7RTN6 431 aa20.48■□□□□ 0.87
CLIP3-206ENST00000593074 FUKQ8N0W3 1084 aa20.48■□□□□ 0.87
CLIP3-206ENST00000593074 KLHDC9Q8NEP7 349 aa20.48■□□□□ 0.87
CLIP3-206ENST00000593074 CKAP2Q8WWK9 683 aa20.48■□□□□ 0.87
CLIP3-206ENST00000593074 NRDE2Q9H7Z3 1164 aa20.48■□□□□ 0.87
CLIP3-206ENST00000593074 SENP1Q9P0U3 644 aa20.48■□□□□ 0.87
CLIP3-206ENST00000593074 PAK5Q9P286 719 aa20.48■□□□□ 0.87
CLIP3-206ENST00000593074 PSMC3IPQ9P2W1 217 aaPredicted RBP20.48■□□□□ 0.87
CLIP3-206ENST00000593074 GABRDO14764 452 aa20.47■□□□□ 0.87
CLIP3-206ENST00000593074 VIMP08670 466 aaKnown RBP20.47■□□□□ 0.87
CLIP3-206ENST00000593074 CYP2F1P24903 491 aa20.47■□□□□ 0.87
CLIP3-206ENST00000593074 MGAT3Q09327 533 aa20.47■□□□□ 0.87
CLIP3-206ENST00000593074 PPP6R3Q5H9R7 873 aaPredicted RBP20.47■□□□□ 0.87
CLIP3-206ENST00000593074 EFHC1Q5JVL4 640 aa20.47■□□□□ 0.87
CLIP3-206ENST00000593074 PPP1R21Q6ZMI0 780 aa20.47■□□□□ 0.87
CLIP3-206ENST00000593074 TAB3Q8N5C8 712 aaPredicted RBP20.47■□□□□ 0.87
CLIP3-206ENST00000593074 CCDC197Q8NCU1 140 aa20.47■□□□□ 0.87
CLIP3-206ENST00000593074 FBXO36Q8NEA4 188 aa20.47■□□□□ 0.87
CLIP3-206ENST00000593074 DUSP16Q9BY84 665 aa20.47■□□□□ 0.87
CLIP3-206ENST00000593074 ACSS3Q9H6R3 686 aa20.47■□□□□ 0.87
CLIP3-206ENST00000593074 MTMR10Q9NXD2 777 aa20.47■□□□□ 0.87
CLIP3-206ENST00000593074 RNF186Q9NXI6 227 aa20.47■□□□□ 0.87
CLIP3-206ENST00000593074 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP20.47■□□□□ 0.87
CLIP3-206ENST00000593074 AP4E1Q9UPM8 1137 aa20.47■□□□□ 0.87
CLIP3-206ENST00000593074 HEY1Q9Y5J3 304 aa20.47■□□□□ 0.87
CLIP3-206ENST00000593074 CYB561D2O14569 222 aa20.47■□□□□ 0.87
CLIP3-206ENST00000593074 ELNP15502 786 aa20.47■□□□□ 0.87
CLIP3-206ENST00000593074 THPOP40225 353 aa20.47■□□□□ 0.87
CLIP3-206ENST00000593074 MATKP42679 507 aa20.47■□□□□ 0.87
CLIP3-206ENST00000593074 ATXN1P54253 815 aaKnown RBP20.47■□□□□ 0.87
CLIP3-206ENST00000593074 GEMIN4P57678 1058 aaKnown RBP20.47■□□□□ 0.87
CLIP3-206ENST00000593074 PIGZQ86VD9 579 aa20.47■□□□□ 0.87
CLIP3-206ENST00000593074 GSTCDQ8NEC7 633 aa20.47■□□□□ 0.87
CLIP3-206ENST00000593074 NKIRAS1Q9NYS0 192 aa20.47■□□□□ 0.87
CLIP3-206ENST00000593074 FAM47DPA6NHR8 397 aa20.46■□□□□ 0.87
CLIP3-206ENST00000593074 MEIS3P2A8K0S8 358 aa20.46■□□□□ 0.87
CLIP3-206ENST00000593074 KCNN4O15554 427 aa20.46■□□□□ 0.87
CLIP3-206ENST00000593074 PRPF4O43172 522 aaKnown RBP eCLIP20.46■□□□□ 0.87
CLIP3-206ENST00000593074 AOC2O75106 756 aa20.46■□□□□ 0.87
CLIP3-206ENST00000593074 ATP2C2O75185 946 aa20.46■□□□□ 0.87
CLIP3-206ENST00000593074 ZBED1O96006 694 aa20.46■□□□□ 0.87
CLIP3-206ENST00000593074 CPP00450 1065 aa20.46■□□□□ 0.87
CLIP3-206ENST00000593074 NPR3P17342 541 aa20.46■□□□□ 0.87
CLIP3-206ENST00000593074 SSTR1P30872 391 aa20.46■□□□□ 0.87
Retrieved 100 of 20,778 RNA–protein pairs in 27.8 ms