RNA–Protein interactions for RNA: ENST00000590181.5

LIG3-212, Transcript of DNA ligase 3, humanhuman

TSL 1 (best)

Gene LIG3, Length 1,156 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-212ENST00000590181 DCLK3Q9C098 648 aa11.07□□□□□ -0.64
LIG3-212ENST00000590181 NACA2Q9H009 215 aa11.07□□□□□ -0.64
LIG3-212ENST00000590181 EBF3Q9H4W6 596 aa11.07□□□□□ -0.64
LIG3-212ENST00000590181 APOBEC3GQ9HC16 384 aaKnown RBP11.07□□□□□ -0.64
LIG3-212ENST00000590181 HPS4Q9NQG7 708 aa11.07□□□□□ -0.64
LIG3-212ENST00000590181 UTP3Q9NQZ2 479 aaKnown RBP eCLIP11.07□□□□□ -0.64
LIG3-212ENST00000590181 C2orf42Q9NWW7 574 aa11.07□□□□□ -0.64
LIG3-212ENST00000590181 RWDD2AQ9UIY3 292 aa11.07□□□□□ -0.64
LIG3-212ENST00000590181 LSM7Q9UK45 103 aaKnown RBP11.07□□□□□ -0.64
LIG3-212ENST00000590181 USP3Q9Y6I4 520 aa11.07□□□□□ -0.64
LIG3-212ENST00000590181 SDK1Q7Z5N4 2213 aa11.07□□□□□ -0.64
LIG3-212ENST00000590181 NUP205Q92621 2012 aa11.06□□□□□ -0.64
LIG3-212ENST00000590181 GTPBP10A4D1E9 387 aaKnown RBP11.06□□□□□ -0.64
LIG3-212ENST00000590181 EPN2O95208 641 aa11.06□□□□□ -0.64
LIG3-212ENST00000590181 MBL2P11226 248 aaPredicted RBP11.06□□□□□ -0.64
LIG3-212ENST00000590181 VDRP11473 427 aa11.06□□□□□ -0.64
LIG3-212ENST00000590181 RAP1GAPP47736 663 aa11.06□□□□□ -0.64
LIG3-212ENST00000590181 BCAT1P54687 386 aa11.06□□□□□ -0.64
LIG3-212ENST00000590181 RAD23BP54727 409 aa11.06□□□□□ -0.64
LIG3-212ENST00000590181 SHC2P98077 582 aa11.06□□□□□ -0.64
LIG3-212ENST00000590181 TNK2Q07912 1038 aa11.06□□□□□ -0.64
LIG3-212ENST00000590181 PON2Q15165 354 aa11.06□□□□□ -0.64
LIG3-212ENST00000590181 RAB41Q5JT25 222 aa11.06□□□□□ -0.64
LIG3-212ENST00000590181 BTBD8Q5XKL5 378 aa11.06□□□□□ -0.64
LIG3-212ENST00000590181 SPOPLQ6IQ16 392 aa11.06□□□□□ -0.64
LIG3-212ENST00000590181 TXNDC11Q6PKC3 985 aa11.06□□□□□ -0.64
LIG3-212ENST00000590181 C11orf74Q86VG3 221 aa11.06□□□□□ -0.64
LIG3-212ENST00000590181 FAM114A1Q8IWE2 563 aa11.06□□□□□ -0.64
LIG3-212ENST00000590181 C12orf29Q8N999 325 aa11.06□□□□□ -0.64
LIG3-212ENST00000590181 SLC4A11Q8NBS3 891 aa11.06□□□□□ -0.64
LIG3-212ENST00000590181 SCAMP5Q8TAC9 235 aa11.06□□□□□ -0.64
LIG3-212ENST00000590181 TTC8Q8TAM2 541 aa11.06□□□□□ -0.64
LIG3-212ENST00000590181 WHAMMQ8TF30 809 aa11.06□□□□□ -0.64
LIG3-212ENST00000590181 SEMA4DQ92854 862 aa11.06□□□□□ -0.64
LIG3-212ENST00000590181 ZFYVE19Q96K21 471 aa11.06□□□□□ -0.64
LIG3-212ENST00000590181 SLC22A12Q96S37 553 aa11.06□□□□□ -0.64
LIG3-212ENST00000590181 RNF38Q9H0F5 515 aa11.06□□□□□ -0.64
LIG3-212ENST00000590181 ARRDC1-AS1Q9H2J1 176 aa11.06□□□□□ -0.64
LIG3-212ENST00000590181 OLA1Q9NTK5 396 aaKnown RBP11.06□□□□□ -0.64
LIG3-212ENST00000590181 TMEM51Q9NW97 253 aa11.06□□□□□ -0.64
LIG3-212ENST00000590181 CHORDC1Q9UHD1 332 aaPredicted RBP11.06□□□□□ -0.64
LIG3-212ENST00000590181 DNMT3LQ9UJW3 386 aa11.06□□□□□ -0.64
LIG3-212ENST00000590181 SH3BP1Q9Y3L3 701 aa11.06□□□□□ -0.64
LIG3-212ENST00000590181 UTP18Q9Y5J1 556 aaKnown RBP eCLIP11.06□□□□□ -0.64
LIG3-212ENST00000590181 HHLA1C9JL84 531 aa11.05□□□□□ -0.64
LIG3-212ENST00000590181 GOLGA6L22H0YM25 854 aa11.05□□□□□ -0.64
LIG3-212ENST00000590181 XPO1O14980 1071 aaKnown RBP11.05□□□□□ -0.64
LIG3-212ENST00000590181 AXIN1O15169 862 aa11.05□□□□□ -0.64
LIG3-212ENST00000590181 COCHO43405 550 aa11.05□□□□□ -0.64
LIG3-212ENST00000590181 TLR5O60602 858 aa11.05□□□□□ -0.64
LIG3-212ENST00000590181 SETSIPP0DME0 302 aa11.05□□□□□ -0.64
LIG3-212ENST00000590181 CCDC130P13994 396 aa11.05□□□□□ -0.64
LIG3-212ENST00000590181 CD58P19256 250 aa11.05□□□□□ -0.64
LIG3-212ENST00000590181 ACO1P21399 889 aaKnown RBP11.05□□□□□ -0.64
LIG3-212ENST00000590181 ERCC5P28715 1186 aaPredicted RBP11.05□□□□□ -0.64
LIG3-212ENST00000590181 HOXC13P31276 330 aa11.05□□□□□ -0.64
LIG3-212ENST00000590181 CHKAP35790 457 aa11.05□□□□□ -0.64
LIG3-212ENST00000590181 TNFRSF4P43489 277 aa11.05□□□□□ -0.64
LIG3-212ENST00000590181 GALK1P51570 392 aa11.05□□□□□ -0.64
LIG3-212ENST00000590181 PMS1P54277 932 aaKnown RBP11.05□□□□□ -0.64
LIG3-212ENST00000590181 CACNA2D1P54289 1103 aa11.05□□□□□ -0.64
LIG3-212ENST00000590181 ZNF445P59923 1031 aa11.05□□□□□ -0.64
LIG3-212ENST00000590181 MRPS21P82921 87 aaKnown RBP11.05□□□□□ -0.64
LIG3-212ENST00000590181 GAD2Q05329 585 aa11.05□□□□□ -0.64
LIG3-212ENST00000590181 BST2Q10589 180 aaKnown RBP11.05□□□□□ -0.64
LIG3-212ENST00000590181 CNGA2Q16280 664 aa11.05□□□□□ -0.64
LIG3-212ENST00000590181 CCDC142Q17RM4 750 aa11.05□□□□□ -0.64
LIG3-212ENST00000590181 CBWD6Q4V339 395 aa11.05□□□□□ -0.64
LIG3-212ENST00000590181 CBWD3Q5JTY5 395 aa11.05□□□□□ -0.64
LIG3-212ENST00000590181 CBWD5Q5RIA9 395 aa11.05□□□□□ -0.64
LIG3-212ENST00000590181 PPP1R26Q5T8A7 1209 aaPredicted RBP11.05□□□□□ -0.64
LIG3-212ENST00000590181 STPG1Q5TH74 334 aa11.05□□□□□ -0.64
LIG3-212ENST00000590181 PM20D1Q6GTS8 502 aa11.05□□□□□ -0.64
LIG3-212ENST00000590181 SYT13Q7L8C5 426 aa11.05□□□□□ -0.64
LIG3-212ENST00000590181 TRIM59Q8IWR1 403 aa11.05□□□□□ -0.64
LIG3-212ENST00000590181 EHBP1Q8NDI1 1231 aa11.05□□□□□ -0.64
LIG3-212ENST00000590181 ZMIZ2Q8NF64 920 aa11.05□□□□□ -0.64
LIG3-212ENST00000590181 KCTD13Q8WZ19 329 aa11.05□□□□□ -0.64
LIG3-212ENST00000590181 GBP4Q96PP9 640 aa11.05□□□□□ -0.64
LIG3-212ENST00000590181 TRIM62Q9BVG3 475 aa11.05□□□□□ -0.64
LIG3-212ENST00000590181 SMG9Q9H0W8 520 aaKnown RBP11.05□□□□□ -0.64
LIG3-212ENST00000590181 MMRN2Q9H8L6 949 aa11.05□□□□□ -0.64
LIG3-212ENST00000590181 RXFP3Q9NSD7 469 aa11.05□□□□□ -0.64
LIG3-212ENST00000590181 TMEM30AQ9NV96 361 aa11.05□□□□□ -0.64
LIG3-212ENST00000590181 WDR35Q9P2L0 1181 aa11.05□□□□□ -0.64
LIG3-212ENST00000590181 EBF1Q9UH73 591 aa11.05□□□□□ -0.64
LIG3-212ENST00000590181 SLC8A2Q9UPR5 921 aa11.05□□□□□ -0.64
LIG3-212ENST00000590181 CPQQ9Y646 472 aa11.05□□□□□ -0.64
LIG3-212ENST00000590181 ATG2BQ96BY7 2078 aa11.05□□□□□ -0.64
LIG3-212ENST00000590181 NPC1O15118 1278 aa11.04□□□□□ -0.64
LIG3-212ENST00000590181 MED7O43513 233 aa11.04□□□□□ -0.64
LIG3-212ENST00000590181 GADD45BO75293 160 aaPredicted RBP11.04□□□□□ -0.64
LIG3-212ENST00000590181 RPP40O75818 363 aaKnown RBP11.04□□□□□ -0.64
LIG3-212ENST00000590181 AFPP02771 609 aaKnown RBP11.04□□□□□ -0.64
LIG3-212ENST00000590181 BMP6P22004 513 aa11.04□□□□□ -0.64
LIG3-212ENST00000590181 ADORA2BP29275 332 aa11.04□□□□□ -0.64
LIG3-212ENST00000590181 GRIA2P42262 883 aa11.04□□□□□ -0.64
LIG3-212ENST00000590181 PXNP49023 591 aaPredicted RBP11.04□□□□□ -0.64
LIG3-212ENST00000590181 SNX16P57768 344 aa11.04□□□□□ -0.64
LIG3-212ENST00000590181 KCNH2Q12809 1159 aa11.04□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 27.3 ms