RNA–Protein interactions for RNA: ENST00000589941.1

SMAD4-209, Transcript of SMAD family member 4, humanhuman

TSL 3

Gene SMAD4, Length 582 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMAD4-209ENST00000589941 MBD3O95983 291 aa8.57□□□□□ -1.04
SMAD4-209ENST00000589941 THBDP07204 575 aa8.57□□□□□ -1.04
SMAD4-209ENST00000589941 HSP90AA1P07900 732 aaKnown RBP8.57□□□□□ -1.04
SMAD4-209ENST00000589941 GDI1P31150 447 aa8.57□□□□□ -1.04
SMAD4-209ENST00000589941 OR1G1P47890 313 aa8.57□□□□□ -1.04
SMAD4-209ENST00000589941 PPP2R2AP63151 447 aa8.57□□□□□ -1.04
SMAD4-209ENST00000589941 SRSF1Q07955 248 aaKnown RBP eCLIP8.57□□□□□ -1.04
SMAD4-209ENST00000589941 LAPTM5Q13571 262 aa8.57□□□□□ -1.04
SMAD4-209ENST00000589941 GRM4Q14833 912 aa8.57□□□□□ -1.04
SMAD4-209ENST00000589941 SEC23AQ15436 765 aa8.57□□□□□ -1.04
SMAD4-209ENST00000589941 FAM78AQ5JUQ0 283 aa8.57□□□□□ -1.04
SMAD4-209ENST00000589941 PPM1LQ5SGD2 360 aa8.57□□□□□ -1.04
SMAD4-209ENST00000589941 KSR1Q8IVT5 923 aa8.57□□□□□ -1.04
SMAD4-209ENST00000589941 URGCPQ8TCY9 931 aa8.57□□□□□ -1.04
SMAD4-209ENST00000589941 RSPRY1Q96DX4 576 aa8.57□□□□□ -1.04
SMAD4-209ENST00000589941 TCEAL4Q96EI5 215 aa8.57□□□□□ -1.04
SMAD4-209ENST00000589941 GPATCH3Q96I76 525 aa8.57□□□□□ -1.04
SMAD4-209ENST00000589941 PGBD1Q96JS3 809 aa8.57□□□□□ -1.04
SMAD4-209ENST00000589941 ZC3H10Q96K80 434 aaKnown RBP8.57□□□□□ -1.04
SMAD4-209ENST00000589941 SCLT1Q96NL6 688 aa8.57□□□□□ -1.04
SMAD4-209ENST00000589941 NAP1L5Q96NT1 182 aaPredicted RBP8.57□□□□□ -1.04
SMAD4-209ENST00000589941 ZNF302Q9NR11 478 aa8.57□□□□□ -1.04
SMAD4-209ENST00000589941 ACSL6Q9UKU0 697 aa8.57□□□□□ -1.04
SMAD4-209ENST00000589941 OBSL1O75147 1896 aa8.57□□□□□ -1.04
SMAD4-209ENST00000589941 NBPF19A0A087WUL8 3843 aa8.57□□□□□ -1.04
SMAD4-209ENST00000589941 J3QKU1 62 aa8.56□□□□□ -1.04
SMAD4-209ENST00000589941 CAVIN2O95810 425 aa8.56□□□□□ -1.04
SMAD4-209ENST00000589941 HNRNPA1P09651 372 aaKnown RBP eCLIP8.56□□□□□ -1.04
SMAD4-209ENST00000589941 PLS3P13797 630 aa8.56□□□□□ -1.04
SMAD4-209ENST00000589941 HOXA6P31267 233 aa8.56□□□□□ -1.04
SMAD4-209ENST00000589941 SLC26A2P50443 739 aa8.56□□□□□ -1.04
SMAD4-209ENST00000589941 PDE1AP54750 535 aa8.56□□□□□ -1.04
SMAD4-209ENST00000589941 DSC1Q08554 894 aa8.56□□□□□ -1.04
SMAD4-209ENST00000589941 PRSS53Q2L4Q9 553 aa8.56□□□□□ -1.04
SMAD4-209ENST00000589941 LIN9Q5TKA1 542 aa8.56□□□□□ -1.04
SMAD4-209ENST00000589941 MBLAC2Q68D91 279 aa8.56□□□□□ -1.04
SMAD4-209ENST00000589941 EFCAB12Q6NXP0 572 aa8.56□□□□□ -1.04
SMAD4-209ENST00000589941 SPATC1Q76KD6 591 aa8.56□□□□□ -1.04
SMAD4-209ENST00000589941 PIP4P1Q86T03 277 aa8.56□□□□□ -1.04
SMAD4-209ENST00000589941 ZNF605Q86T29 641 aa8.56□□□□□ -1.04
SMAD4-209ENST00000589941 IQCA1Q86XH1 822 aa8.56□□□□□ -1.04
SMAD4-209ENST00000589941 JAMLQ86YT9 394 aa8.56□□□□□ -1.04
SMAD4-209ENST00000589941 TTC8Q8TAM2 541 aa8.56□□□□□ -1.04
SMAD4-209ENST00000589941 GPT2Q8TD30 523 aa8.56□□□□□ -1.04
SMAD4-209ENST00000589941 FRS2Q8WU20 508 aa8.56□□□□□ -1.04
SMAD4-209ENST00000589941 MAP7D2Q96T17 732 aa8.56□□□□□ -1.04
SMAD4-209ENST00000589941 CLSTN3Q9BQT9 956 aa8.56□□□□□ -1.04
SMAD4-209ENST00000589941 SDF4Q9BRK5 362 aa8.56□□□□□ -1.04
SMAD4-209ENST00000589941 SLC6A17Q9H1V8 727 aa8.56□□□□□ -1.04
SMAD4-209ENST00000589941 RSAD1Q9HA92 442 aa8.56□□□□□ -1.04
SMAD4-209ENST00000589941 AGO4Q9HCK5 861 aaKnown RBP8.56□□□□□ -1.04
SMAD4-209ENST00000589941 CRTAC1Q9NQ79 661 aa8.56□□□□□ -1.04
SMAD4-209ENST00000589941 FAM53CQ9NYF3 392 aa8.56□□□□□ -1.04
SMAD4-209ENST00000589941 SIRPGQ9P1W8 387 aa8.56□□□□□ -1.04
SMAD4-209ENST00000589941 FNIP2Q9P278 1114 aa8.56□□□□□ -1.04
SMAD4-209ENST00000589941 MRPS23Q9Y3D9 190 aaKnown RBP8.56□□□□□ -1.04
SMAD4-209ENST00000589941 PCDHB2Q9Y5E7 798 aa8.56□□□□□ -1.04
SMAD4-209ENST00000589941 UTP20O75691 2785 aaKnown RBP8.56□□□□□ -1.04
SMAD4-209ENST00000589941 COL6A6A6NMZ7 2263 aa8.55□□□□□ -1.04
SMAD4-209ENST00000589941 DOPEY2Q9Y3R5 2298 aa8.55□□□□□ -1.04
SMAD4-209ENST00000589941 ALDH2P05091 517 aa8.55□□□□□ -1.04
SMAD4-209ENST00000589941 PCP11498 1178 aaKnown RBP8.55□□□□□ -1.04
SMAD4-209ENST00000589941 PNLIPP16233 465 aa8.55□□□□□ -1.04
SMAD4-209ENST00000589941 PAMP19021 973 aa8.55□□□□□ -1.04
SMAD4-209ENST00000589941 VIPR2P41587 438 aa8.55□□□□□ -1.04
SMAD4-209ENST00000589941 CCR2P41597 374 aa8.55□□□□□ -1.04
SMAD4-209ENST00000589941 MESP2Q0VG99 397 aa8.55□□□□□ -1.04
SMAD4-209ENST00000589941 LRRC32Q14392 662 aa8.55□□□□□ -1.04
SMAD4-209ENST00000589941 UBXN11Q5T124 520 aa8.55□□□□□ -1.04
SMAD4-209ENST00000589941 ADGRF1Q5T601 910 aa8.55□□□□□ -1.04
SMAD4-209ENST00000589941 IFIT1BQ5T764 474 aaKnown RBP8.55□□□□□ -1.04
SMAD4-209ENST00000589941 FAM160B1Q5W0V3 765 aa8.55□□□□□ -1.04
SMAD4-209ENST00000589941 SWSAP1Q6NVH7 229 aa8.55□□□□□ -1.04
SMAD4-209ENST00000589941 FUT10Q6P4F1 479 aa8.55□□□□□ -1.04
SMAD4-209ENST00000589941 CYB5R4Q7L1T6 521 aa8.55□□□□□ -1.04
SMAD4-209ENST00000589941 CUL5Q93034 780 aa8.55□□□□□ -1.04
SMAD4-209ENST00000589941 ZSWIM3Q96MP5 696 aa8.55□□□□□ -1.04
SMAD4-209ENST00000589941 FAM193BQ96PV7 902 aaPredicted RBP8.55□□□□□ -1.04
SMAD4-209ENST00000589941 TRMT61BQ9BVS5 477 aaKnown RBP8.55□□□□□ -1.04
SMAD4-209ENST00000589941 LY9Q9HBG7 655 aa8.55□□□□□ -1.04
SMAD4-209ENST00000589941 FSCN3Q9NQT6 498 aa8.55□□□□□ -1.04
SMAD4-209ENST00000589941 MIOSQ9NXC5 875 aa8.55□□□□□ -1.04
SMAD4-209ENST00000589941 STK39Q9UEW8 545 aa8.55□□□□□ -1.04
SMAD4-209ENST00000589941 TMEFF2Q9UIK5 374 aaPredicted RBP8.55□□□□□ -1.04
SMAD4-209ENST00000589941 SSX2IPQ9Y2D8 614 aa8.55□□□□□ -1.04
SMAD4-209ENST00000589941 DENND4CQ5VZ89 1909 aa8.54□□□□□ -1.04
SMAD4-209ENST00000589941 A0A087WZ62 844 aa8.54□□□□□ -1.04
SMAD4-209ENST00000589941 NPHP3-ACAD11A0A0J9YXS1 232 aa8.54□□□□□ -1.04
SMAD4-209ENST00000589941 WDR27A2RRH5 827 aa8.54□□□□□ -1.04
SMAD4-209ENST00000589941 PDPK1O15530 556 aa8.54□□□□□ -1.04
SMAD4-209ENST00000589941 MEFVO15553 781 aaPredicted RBP8.54□□□□□ -1.04
SMAD4-209ENST00000589941 ZNF623O75123 536 aa8.54□□□□□ -1.04
SMAD4-209ENST00000589941 RHOP08100 348 aa8.54□□□□□ -1.04
SMAD4-209ENST00000589941 SNRPB2P08579 225 aaKnown RBP8.54□□□□□ -1.04
SMAD4-209ENST00000589941 HOXA9P31269 272 aa8.54□□□□□ -1.04
SMAD4-209ENST00000589941 HOXC12P31275 282 aa8.54□□□□□ -1.04
SMAD4-209ENST00000589941 L1CAMP32004 1257 aa8.54□□□□□ -1.04
SMAD4-209ENST00000589941 MLH1P40692 756 aa8.54□□□□□ -1.04
SMAD4-209ENST00000589941 ECI1P42126 302 aa8.54□□□□□ -1.04
SMAD4-209ENST00000589941 SCNN1GP51170 649 aa8.54□□□□□ -1.04
Retrieved 100 of 20,778 RNA–protein pairs in 19.7 ms