RNA–Protein interactions for RNA: ENST00000586119.1

LIG3-207, Transcript of DNA ligase 3, humanhuman

TSL 3

Gene LIG3, Length 565 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-207ENST00000586119 FAM92AA1XBS5 289 aa12.3□□□□□ -0.44
LIG3-207ENST00000586119 PRRT4C9JH25 899 aa12.3□□□□□ -0.44
LIG3-207ENST00000586119 HOXC11O43248 304 aaPredicted RBP12.3□□□□□ -0.44
LIG3-207ENST00000586119 HYAL3O43820 417 aaPredicted RBP12.3□□□□□ -0.44
LIG3-207ENST00000586119 CLSTN1O94985 981 aa12.3□□□□□ -0.44
LIG3-207ENST00000586119 CFIP05156 583 aa12.3□□□□□ -0.44
LIG3-207ENST00000586119 HOXB3P14651 431 aaPredicted RBP12.3□□□□□ -0.44
LIG3-207ENST00000586119 NDST1P52848 882 aa12.3□□□□□ -0.44
LIG3-207ENST00000586119 BMT2Q1RMZ1 405 aa12.3□□□□□ -0.44
LIG3-207ENST00000586119 C1orf220Q5T0J3 134 aa12.3□□□□□ -0.44
LIG3-207ENST00000586119 LYSMD4Q5XG99 296 aa12.3□□□□□ -0.44
LIG3-207ENST00000586119 TPGS1Q6ZTW0 290 aa12.3□□□□□ -0.44
LIG3-207ENST00000586119 DDX42Q86XP3 938 aaKnown RBP eCLIP12.3□□□□□ -0.44
LIG3-207ENST00000586119 C12orf56Q8IXR9 622 aa12.3□□□□□ -0.44
LIG3-207ENST00000586119 KIAA0895Q8NCT3 520 aa12.3□□□□□ -0.44
LIG3-207ENST00000586119 PDZD8Q8NEN9 1154 aa12.3□□□□□ -0.44
LIG3-207ENST00000586119 SLC2A14Q8TDB8 520 aa12.3□□□□□ -0.44
LIG3-207ENST00000586119 OVCA2Q8WZ82 227 aa12.3□□□□□ -0.44
LIG3-207ENST00000586119 ZNF396Q96N95 335 aaPredicted RBP12.3□□□□□ -0.44
LIG3-207ENST00000586119 GTPBP2Q9BX10 602 aaKnown RBP12.3□□□□□ -0.44
LIG3-207ENST00000586119 NUSAP1Q9BXS6 441 aaKnown RBP12.3□□□□□ -0.44
LIG3-207ENST00000586119 VRTNQ9H8Y1 702 aa12.3□□□□□ -0.44
LIG3-207ENST00000586119 NMUR1Q9HB89 426 aa12.3□□□□□ -0.44
LIG3-207ENST00000586119 CD248Q9HCU0 757 aa12.3□□□□□ -0.44
LIG3-207ENST00000586119 DMAP1Q9NPF5 467 aaPredicted RBP12.3□□□□□ -0.44
LIG3-207ENST00000586119 KRT82Q9NSB4 513 aa12.3□□□□□ -0.44
LIG3-207ENST00000586119 DMAC2Q9NW81 257 aa12.3□□□□□ -0.44
LIG3-207ENST00000586119 CALCOCO1Q9P1Z2 691 aa12.3□□□□□ -0.44
LIG3-207ENST00000586119 DEC1Q9P2X7 70 aa12.3□□□□□ -0.44
LIG3-207ENST00000586119 EVLQ9UI08 416 aaPredicted RBP12.3□□□□□ -0.44
LIG3-207ENST00000586119 IGF2RP11717 2491 aa12.3□□□□□ -0.44
LIG3-207ENST00000586119 PCDH15Q96QU1 1955 aa12.29□□□□□ -0.44
LIG3-207ENST00000586119 IGHV1OR15-9A0A0B4J2B8 117 aa12.29□□□□□ -0.44
LIG3-207ENST00000586119 PALM2-AKAP2B1ALY0 433 aaPredicted RBP12.29□□□□□ -0.44
LIG3-207ENST00000586119 HHLA1C9JL84 531 aa12.29□□□□□ -0.44
LIG3-207ENST00000586119 NEDD8-MDP1E9PL57 170 aa12.29□□□□□ -0.44
LIG3-207ENST00000586119 TLR5O60602 858 aa12.29□□□□□ -0.44
LIG3-207ENST00000586119 YEATS4O95619 227 aa12.29□□□□□ -0.44
LIG3-207ENST00000586119 CISD3P0C7P0 127 aa12.29□□□□□ -0.44
LIG3-207ENST00000586119 HOXB2P14652 356 aa12.29□□□□□ -0.44
LIG3-207ENST00000586119 MAOBP27338 520 aa12.29□□□□□ -0.44
LIG3-207ENST00000586119 ADORA2BP29275 332 aa12.29□□□□□ -0.44
LIG3-207ENST00000586119 SNRPFP62306 86 aaKnown RBP12.29□□□□□ -0.44
LIG3-207ENST00000586119 CLDN10P78369 228 aa12.29□□□□□ -0.44
LIG3-207ENST00000586119 RPL6Q02878 288 aaKnown RBP12.29□□□□□ -0.44
LIG3-207ENST00000586119 HSF5Q4G112 596 aaPredicted RBP12.29□□□□□ -0.44
LIG3-207ENST00000586119 BTBD8Q5XKL5 378 aa12.29□□□□□ -0.44
LIG3-207ENST00000586119 SLC23A3Q6PIS1 610 aa12.29□□□□□ -0.44
LIG3-207ENST00000586119 SLC41A1Q8IVJ1 513 aa12.29□□□□□ -0.44
LIG3-207ENST00000586119 TERB1Q8NA31 727 aa12.29□□□□□ -0.44
LIG3-207ENST00000586119 KDF1Q8NAX2 398 aaPredicted RBP12.29□□□□□ -0.44
LIG3-207ENST00000586119 GATA6Q92908 595 aa12.29□□□□□ -0.44
LIG3-207ENST00000586119 BHMTQ93088 406 aa12.29□□□□□ -0.44
LIG3-207ENST00000586119 OTUB2Q96DC9 234 aa12.29□□□□□ -0.44
LIG3-207ENST00000586119 SMARCD1Q96GM5 515 aa12.29□□□□□ -0.44
LIG3-207ENST00000586119 SPACA7Q96KW9 195 aa12.29□□□□□ -0.44
LIG3-207ENST00000586119 ADAM33Q9BZ11 813 aa12.29□□□□□ -0.44
LIG3-207ENST00000586119 DNAJC17Q9NVM6 304 aaKnown RBP12.29□□□□□ -0.44
LIG3-207ENST00000586119 PLK2Q9NYY3 685 aa12.29□□□□□ -0.44
LIG3-207ENST00000586119 KLK13Q9UKR3 277 aa12.29□□□□□ -0.44
LIG3-207ENST00000586119 CYP8B1Q9UNU6 501 aa12.29□□□□□ -0.44
LIG3-207ENST00000586119 UBE4BO95155 1302 aa12.29□□□□□ -0.44
LIG3-207ENST00000586119 ASPMQ8IZT6 3477 aa12.29□□□□□ -0.44
LIG3-207ENST00000586119 PVALEFA0A1B0GWK0 134 aa12.28□□□□□ -0.44
LIG3-207ENST00000586119 CYP26A1O43174 497 aa12.28□□□□□ -0.44
LIG3-207ENST00000586119 TYRP14679 529 aa12.28□□□□□ -0.44
LIG3-207ENST00000586119 NDUFV2P19404 249 aa12.28□□□□□ -0.44
LIG3-207ENST00000586119 NTSR1P30989 418 aa12.28□□□□□ -0.44
LIG3-207ENST00000586119 ZNF33AQ06730 810 aa12.28□□□□□ -0.44
LIG3-207ENST00000586119 LMAN2Q12907 356 aa12.28□□□□□ -0.44
LIG3-207ENST00000586119 SEMA3BQ13214 749 aa12.28□□□□□ -0.44
LIG3-207ENST00000586119 PKP1Q13835 747 aa12.28□□□□□ -0.44
LIG3-207ENST00000586119 KMT5BQ4FZB7 885 aa12.28□□□□□ -0.44
LIG3-207ENST00000586119 PEAR1Q5VY43 1037 aaPredicted RBP12.28□□□□□ -0.44
LIG3-207ENST00000586119 GRAMD4Q6IC98 578 aa12.28□□□□□ -0.44
LIG3-207ENST00000586119 HTR3DQ70Z44 454 aa12.28□□□□□ -0.44
LIG3-207ENST00000586119 SV2AQ7L0J3 742 aa12.28□□□□□ -0.44
LIG3-207ENST00000586119 PIP4P1Q86T03 277 aa12.28□□□□□ -0.44
LIG3-207ENST00000586119 CRYBG2Q8N1P7 616 aa12.28□□□□□ -0.44
LIG3-207ENST00000586119 IPO4Q8TEX9 1081 aaKnown RBP12.28□□□□□ -0.44
LIG3-207ENST00000586119 CAMK1GQ96NX5 476 aa12.28□□□□□ -0.44
LIG3-207ENST00000586119 BBS2Q9BXC9 721 aa12.28□□□□□ -0.44
LIG3-207ENST00000586119 NACA2Q9H009 215 aa12.28□□□□□ -0.44
LIG3-207ENST00000586119 KCTD10Q9H3F6 313 aa12.28□□□□□ -0.44
LIG3-207ENST00000586119 APOBEC3GQ9HC16 384 aaKnown RBP12.28□□□□□ -0.44
LIG3-207ENST00000586119 CSNK1G1Q9HCP0 422 aa12.28□□□□□ -0.44
LIG3-207ENST00000586119 STARD13Q9Y3M8 1113 aa12.28□□□□□ -0.44
LIG3-207ENST00000586119 A0A1W2PQH9 124 aa12.27□□□□□ -0.45
LIG3-207ENST00000586119 ASPAP45381 313 aa12.27□□□□□ -0.45
LIG3-207ENST00000586119 TUBP50607 506 aa12.27□□□□□ -0.45
LIG3-207ENST00000586119 SIM1P81133 766 aaPredicted RBP12.27□□□□□ -0.45
LIG3-207ENST00000586119 NUMA1Q14980 2115 aa12.27□□□□□ -0.45
LIG3-207ENST00000586119 DUOXA1Q1HG43 343 aa12.27□□□□□ -0.45
LIG3-207ENST00000586119 SGSM1Q2NKQ1 1148 aa12.27□□□□□ -0.45
LIG3-207ENST00000586119 ZACNQ401N2 412 aa12.27□□□□□ -0.45
LIG3-207ENST00000586119 RESP18Q5W5W9 173 aa12.27□□□□□ -0.45
LIG3-207ENST00000586119 CLEC20AQ6ZU45 233 aa12.27□□□□□ -0.45
LIG3-207ENST00000586119 SCD5Q86SK9 330 aa12.27□□□□□ -0.45
LIG3-207ENST00000586119 CHPFQ8IZ52 775 aa12.27□□□□□ -0.45
LIG3-207ENST00000586119 CHCHD4Q8N4Q1 142 aa12.27□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 300.2 ms